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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008539 ID=TCONS_00008539|Name=TCONS_00008539|organism=Clytia hemisphaerica|type=transcript|length=791bp
TGGACTTACTGGTGCAGAGACATCACACCGCACGAATATGATGTTCATCC
AGCCCGAATCTTATATCAAATCGAATCTCAGCAAAGATACTGAACAGTCT
GTACACGTTCATGACGTAACACGTTTGAAAAACTTCACAAGAGAGCAACA
CAAAATCCTTAAATATTCTACAAGTTCTAGAGGGGCACCATTGCCAATAA
ACGCAGTCGACATCACAGCGCTGTCAAGTTCTGACTCAATAAGGAAAAAG
ATGTTTATTCATGCTGCTTTGCGCATCGACGAGTCAGAAAAAGAAGTGCC
TGATATTGGTGCCTTCACAGGATTCATGAGCTCAATATCTCCGATTGAAA
CCAAGTCTAAACCATACTACCATGTTAGCCTACCCAAGTCACCTTCTAAA
TCTGTTGTTTACACATTAATGAAGAAGGCTGCCGATGCGGCCTCTTATAA
ACGTATGCCGTTCATTCAATTTGTTGGCGACCAACCCGTTTACACCCACA
TGATGGAATTGAAATACGAAAACAGTGAGATGTTCGAAAAGGTCATTCCT
GTTCTGGCCCCGTTTCACACGCAAATGTCCTTCATTAGTGCAATTTTCAA
GAGAATCAATGGATCGGAAATATCTGATTTGGTTGTCAATGCTGGACTTA
TAGCAGAGGGATCAGCAGAGCAGGCATTGAAAGGAAAACACTACAACCGA
GCACAGCGTCTCTACAAATTAATCTACGAATCACTTGCTCGGATTTTGAT
CAATCTTGGTATCGACAAAGAAATCAAATTCCCGGAAAATC Run BLAST on NCBI protein sequence of TCONS_00008539-protein >TCONS_00008539-protein ID=TCONS_00008539-protein|Name=TCONS_00008539-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
GLTGAETSHRTNMMFIQPESYIKSNLSKDTEQSVHVHDVTRLKNFTREQH
KILKYSTSSRGAPLPINAVDITALSSSDSIRKKMFIHAALRIDESEKEVP
DIGAFTGFMSSISPIETKSKPYYHVSLPKSPSKSVVYTLMKKAADAASYK
RMPFIQFVGDQPVYTHMMELKYENSEMFEKVIPVLAPFHTQMSFISAIFK
RINGSEISDLVVNAGLIAEGSAEQALKGKHYNRAQRLYKLIYESLARILI
NLGIDKEIKFPEN Run BLAST on NCBI transcript from alignment at sc0000086:278209..279126+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008539 ID=TCONS_00008539|Name=TCONS_00008539|organism=Clytia hemisphaerica|type=transcript|length=918bp|location=Sequence derived from alignment at sc0000086:278209..279126+ (Clytia hemisphaerica)
TGGACTTACTGGTGCAGAGACATCACACCGCACGAATATGATGTTCATCC
AGCCCGAATCTTATATCAAATCGAATCTCAGCAAAGATACTGAACAGTCT
GTACACGTTCATGACGTAACACGTTTGAAAAACTTCACAAGAGAGCAACA
CAAAATCCTTAAATATTCTACAAGTTCTAGAGGGGCACCATTGCCAATAA
ACGCAGTCGACATCACAGCGCTGTCAAGTTCTGACTCAATAAGGAAAAAG
ATGTTTATTCATGCTGCTTGTAAGTACTATTGCTGATATTTCAGGTTTCA
AAAGCATTGATGCCGAGAGAAATAAAATAATCTATTCCATAAGTATTCgg
attcgattttttgaaatatcggACTTATTTTTGCTCTTCCTTTTAGTGCG
CATCGACGAGTCAGAAAAAGAAGTGCCTGATATTGGTGCCTTCACAGGAT
TCATGAGCTCAATATCTCCGATTGAAACCAAGTCTAAACCATACTACCAT
GTTAGCCTACCCAAGTCACCTTCTAAATCTGTTGTTTACACATTAATGAA
GAAGGCTGCCGATGCGGCCTCTTATAAACGTATGCCGTTCATTCAATTTG
TTGGCGACCAACCCGTTTACACCCACATGATGGAATTGAAATACGAAAAC
AGTGAGATGTTCGAAAAGGTCATTCCTGTTCTGGCCCCGTTTCACACGCA
AATGTCCTTCATTAGTGCAATTTTCAAGAGAATCAATGGATCGGAAATAT
CTGATTTGGTTGTCAATGCTGGACTTATAGCAGAGGGATCAGCAGAGCAG
GCATTGAAAGGAAAACACTACAACCGAGCACAGCGTCTCTACAAATTAAT
CTACGAATCACTTGCTCGGATTTTGATCAATCTTGGTATCGACAAAGAAA
TCAAATTCCCGGAAAATC Coding sequence (CDS) from alignment at sc0000086:278209..279126+ >TCONS_00008539 ID=TCONS_00008539|Name=TCONS_00008539|organism=Clytia hemisphaerica|type=CDS|length=1578bp|location=Sequence derived from alignment at sc0000086:278209..279126+ (Clytia hemisphaerica)
GGACTTACTGGTGCAGAGACATCACACCGCACGAATATGATGTTCATCCA
GCCCGAATCTTATATCAAATCGAATCTCAGCAAAGATACTGAACAGTCTG
TACACGTTCATGACGTAACACGTTTGAAAAACTTCACAAGAGAGCAACAC
AAAATCCTTAAATATTCTACAAGTTCTAGAGGGGCACCATTGCCAATAAA
CGCAGTCGACATCACAGCGCTGTCAAGTTCTGACTCAATAAGGAAAAAGA
TGTTTATTCATGCTGCTTTGCGCATCGACGAGTCAGAAAAAGAAGTGCCT
GATATTGGTGCCTTCACAGGATTCATGAGCTCAATATCTCCGATTGAAAC
CAAGTCTAAACCATACTACCATGTTAGCCTACCCAAGTCACCTTCTAAAT
CTGTTGTTTACACATTAATGAAGAAGGCTGCCGATGCGGCCTCTTATAAA
CGTATGCCGTTCATTCAATTTGTTGGCGACCAACCCGTTTACACCCACAT
GATGGAATTGAAATACGAAAACAGTGAGATGTTCGAAAAGGTCATTCCTG
TTCTGGCCCCGTTTCACACGCAAATGTCCTTCATTAGTGCAATTTTCAAG
AGAATCAATGGATCGGAAATATCTGATTTGGTTGTCAATGCTGGACTTAT
AGCAGAGGGATCAGCAGAGCAGGCATTGAAAGGAAAACACTACAACCGAG
CACAGCGTCTCTACAAATTAATCTACGAATCACTTGCTCGGATTTTGATC
AATCTTGGTATCGACAAAGAAATCAAATTCCCGGAAAATGGACTTACTGG
TGCAGAGACATCACACCGCACGAATATGATGTTCATCCAGCCCGAATCTT
ATATCAAATCGAATCTCAGCAAAGATACTGAACAGTCTGTACACGTTCAT
GACGTAACACGTTTGAAAAACTTCACAAGAGAGCAACACAAAATCCTTAA
ATATTCTACAAGTTCTAGAGGGGCACCATTGCCAATAAACGCAGTCGACA
TCACAGCGCTGTCAAGTTCTGACTCAATAAGGAAAAAGATGTTTATTCAT
GCTGCTTTGCGCATCGACGAGTCAGAAAAAGAAGTGCCTGATATTGGTGC
CTTCACAGGATTCATGAGCTCAATATCTCCGATTGAAACCAAGTCTAAAC
CATACTACCATGTTAGCCTACCCAAGTCACCTTCTAAATCTGTTGTTTAC
ACATTAATGAAGAAGGCTGCCGATGCGGCCTCTTATAAACGTATGCCGTT
CATTCAATTTGTTGGCGACCAACCCGTTTACACCCACATGATGGAATTGA
AATACGAAAACAGTGAGATGTTCGAAAAGGTCATTCCTGTTCTGGCCCCG
TTTCACACGCAAATGTCCTTCATTAGTGCAATTTTCAAGAGAATCAATGG
ATCGGAAATATCTGATTTGGTTGTCAATGCTGGACTTATAGCAGAGGGAT
CAGCAGAGCAGGCATTGAAAGGAAAACACTACAACCGAGCACAGCGTCTC
TACAAATTAATCTACGAATCACTTGCTCGGATTTTGATCAATCTTGGTAT
CGACAAAGAAATCAAATTCCCGGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008539-exon-sc0000086-1491911889:278209..278477 | TCONS_00008539-exon-sc0000086-1491911889:278209..278477 | Clytia hemisphaerica | exon |
| TCONS_00008539-exon-sc0000086-1510915933:278209..278477 | TCONS_00008539-exon-sc0000086-1510915933:278209..278477 | Clytia hemisphaerica | exon |
| TCONS_00008539-exon-sc0000086-1575043694:278209..278477 | TCONS_00008539-exon-sc0000086-1575043694:278209..278477 | Clytia hemisphaerica | exon |
| TCONS_00008539-exon-sc0000086-1491911889:278605..279126 | TCONS_00008539-exon-sc0000086-1491911889:278605..279126 | Clytia hemisphaerica | exon |
| TCONS_00008539-exon-sc0000086-1510915933:278605..279126 | TCONS_00008539-exon-sc0000086-1510915933:278605..279126 | Clytia hemisphaerica | exon |
| TCONS_00008539-exon-sc0000086-1575043694:278605..279126 | TCONS_00008539-exon-sc0000086-1575043694:278605..279126 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:278209..279126 + |
Blast
The following BLAST results are available for this feature:
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