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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008581 ID=TCONS_00008581|Name=TCONS_00008581|organism=Clytia hemisphaerica|type=transcript|length=3720bp
aaaaaaaattgaaaggggTTCCCTTGTATCTTACATCACAGTTTTGAAAA
AGATGGAAGCTCCCAGTTGCTAAGCCCACCAAAACATATCCGTCGACCAT
GTGCGAGCGTTTGAGTGGTTTCAGAGTATACCAATTAGTTCGCCATGTCT
TTTGGGTTGTTTTGAGTTatagcaaagaataaaatgacgtcataagcgCG
GGAAAATACGAAAATTCGCGCCGAATTCGCCACGTGCAGGGGTAGTCAGG
CCTTGCATGAATTTCTCTCCCATAAAGAAGGTAATTTGACCATGGAACAT
GGTCCAAGTATAAAAGAAGAACAACAAATCAGACATGCCTATTTGCATTC
ATAAAGCAGTTACATCTACTATTTACAGAATGAATGGAAAGGGAAAGCAC
ACCGGCACCAAAGCACCGCTAAGCTCATTGCAACCCCGACAGCTGCGCAC
AACGTACCTGATAACCTACAGCCAGGCCGACCTAACCAGATTCCCCGACC
GAGAAGACTTTGCACGACTGGTTGTGGGTCTGTTCAACGAGACGGAAGGT
GTAGGACGGGTTGATTATTGGGTCTGTGGCAAGGAGGAACACCGAAACAC
TTCTGGGTATCATTACCATCTCGCCCTGAAGTTGACAGACGGTATCCGCT
TTGATAGTGTCCAAGCCCGCCTGGTCGAGGAAAATGATGTGAAGGTCAAT
TTTCGAGACGACTATGACCTGTATGTTTATGCACAGCGTTATTGCGTCAA
AGAGGACGACGGTGCTGTCTACAGCCCCAACCACCCCCCAGTTGAAAGCA
TGAAGTCACCCCGAACGAAAAAGGCAGTTGCGCAGAGACGGGCCAATGCC
AGAGCCAGGAGAGAAGCCAGGGAGCAGGATGTCAACGAGCAGGATGTCAA
CGAGCAGTCCACAGCTTCTAGTCGGCCAAGAACCAGGTCACAAACCGCAG
CTCAGCGTGAGCCACTCCCACCCAAGGTGCAACGTGTCGGTAAGTTTGAG
GTTTCCCGTTTCATTGCTGAGAATGGAATTATCGACGTTGCTCACTTGTG
GGCGGCAGGTCGCGCACGCATGGAGGCTGGGGAGAATGACCTGGCAAAAT
TTCTAATCGACCGCGAATCCAGGCCCAAAGAGATTTCCTCCCTTTTTGAA
GGCAACAGAAAGCTTGATGAGTCGCTCAGTCCTGCTGAACGCCCTCCCCC
TCGCAAAAGAATGGAAGTCCTCAGGGAAGTCTTGCGTGGCCATTGCATTG
AGGGGTGTGGCGGCCGTTGGTTCACGTGCGCCATTGAGATCTTAGAACAC
AACAGGATTACGGTCGGCACGTACGCCAAGTCCATGAGGTTGCTCTTTGA
AAAGGGAAGGGGCAAGAGAAGAAACATGATGTTGACTGGGCCCAAAGACT
CCGGCAAAACCTTTCTGATGGACCCAGTCCGAAAAATATTTAAGACTTTC
TTAAACCCGGCCGACGACAAGTACACATGGCAAGATGCAGAGGATTGCGA
GGCCATGTTCTTTAATGATTTCCGCTGGTCTAAAAATATGATAAGGTGGA
ATGACTTGCTCGTACTGCTCGAGGGCCACCCTGTCCGCTTTCCCGTTCCC
AAAAACCAAAGGGCCAAAGACATTTTGTTTACGCGGGATGTCCCAATATT
TGCAACCAGCCGATCTACTGTCAGGCTTGGAAAGGGCGGTGGATCCTACA
ATGACGACGTTGAGGAGGACGACAACAACGAGGGAGATGATGCTGTGAGC
AGAGAGAATGGGATGATGAAAGTCCGATGGGTTGTTTACAATTTGCCATT
CACCATCCGTAACATCGTTGAGCTGGAAGCGTGCCCAAGATGCTACGCAA
ACTTAGTGTTTTACGGTGATGCCACCGTGTAATTTTGTATAGTATTTATT
AGTATTTATTCCGTCGTCATTGTAAGATACTTGATAAAACCCTTCACCGA
CCTAATCTCATGTGTACGCTTATAATTCTTTGCAAAGACTATTTCATAAT
ATGCCCGATTTAAATTCCacgacactttgaaaatcttaattAAAAAAGCT
GACAGTATTTTTTCATAATATCCCTGATTCTAATAATACAGTCTAAAGAA
TGTTTTCCAGCTTCTCCGGCTACTTTGCGGTCCAAAGTCTACATTAATCC
ACAATTAACCACAGTTAACCGAGGGCTGCTCTTTAAAAGAAACTTTAGAT
AATATTAATGTTCTTTATGAAAAAGGAGGAGGTTAACTGTGGTTAACTGT
GGTTAACTGTGGTTAACTGTGAgtattatttgaaaaatatcaagaaagaG
CAACACAAGAGCATATGTAGCCAAAATCAATATCTCAGCCTGCCACCACg
cctttttataattttgtccAACCGTTTCGGCATACTACCAATAATTCGGT
CAATCATTCCAGCGTCAAAGTTCTCAATGGTTGCCTTCACCCGGGCACTG
AATTCGTTGAAACTTTCCTTAGTAATTCTGTTATCCAATGCATCCTGCGA
AAGTTTTCGACTGACCAAGTTAAAAAAGTTCTCAATGGGATTAAGGTCTG
GACTGCGCGGTGGAATGGAGAACACTTCGGCTCCAATGTCCTTGATTGCC
TTCTTAGCCTTGGCAGAATTTTGAACAGGACAACCGTCCTGTAAGAAAGC
CTTACCCCGGATGTGTCGAGTAGATTGATAGATTGCAGGGAATTCCTCAC
GCACCATTTTAGCGAAGCTGTCACCGTTCCATCTGTTGTGGTACTGGCGA
CAAAATACCACACCACGGTTCGGACAAATTGCCACCATGAAATTGGACAT
GCGGCCCCCTGTACCTGCGCGTTTACCTTTCGTCGTGCACTGGCCACTCA
ATCCTTCGGCTCTTCGACGCCAGGCCATAGTTTTGGTGGAGCGGGCCTCA
TCATGTGGGTTGGTCTTGTGTGTGAACCCGGTACCATCCAAATAGAAATT
AATATGCTTCATCCAAAAGTTCTTTGGCAGTTTCCGGGCATTCCGGGCAA
ATGCCAAACGTTTATGCAAGTCTGTGTTTTTCATAATCCCTTTACGACGG
GAGTGAAGATATCTGTAGCCATGTCTTCGCATAACTCTACCAACAGTGGC
CATGGAAACTGTCTGGTCAATTCCGGCCTCCACAGCAAGTCTGCGCAAAG
TAAATGGGCCGATCGTGCTTCTCATACGTTTGATGTGGCGAATAAGGTTT
CTCTCGTCACGCGGGGTGAGTCTCCTTGGACGTCCAGGATTTAGTTTTCG
TTTATCGTGTGGTCGGTTGAGCGGCCTCTTCACATGTCTAAAAACGGTTG
CACGGCTGTATTTTGGAAACTTCTTCATGATACGGCTGACCGGCATCTTC
AACTCCACATACAGGAATCTCATGTACAGGGAATCAGCGATGGAGACTTT
GCTCTGTTTTCTGCGCATGCCATCCATTTGTCGTTCAGTGATCAATTGat
taagtaagtaagtagtttttcttttatttcatttattttttctgtaaTGA
GAAATATGTATATATGTAATAAACAATTGAACAAGATATTGAGGTAAAAT
AAAGGCGGCCGGGTCACTTCGTGTTAATTAATGATGTCGGTTAATCGCCT
GCGTTTTTGTTTTTACTACGTTACAGTTTGGTCCATACTTTCGCCTTTTA
CGAAACACCTGGCCGGGTGACAATGGTATTCTCAAAACGCCCCCACTGTA
GGGCGAGGCCacgtgcaaaa Run BLAST on NCBI protein sequence of TCONS_00008581-protein >TCONS_00008581-protein ID=TCONS_00008581-protein|Name=TCONS_00008581-protein|organism=Clytia hemisphaerica|type=polypeptide|length=515bp
MPICIHKAVTSTIYRMNGKGKHTGTKAPLSSLQPRQLRTTYLITYSQADL
TRFPDREDFARLVVGLFNETEGVGRVDYWVCGKEEHRNTSGYHYHLALKL
TDGIRFDSVQARLVEENDVKVNFRDDYDLYVYAQRYCVKEDDGAVYSPNH
PPVESMKSPRTKKAVAQRRANARARREAREQDVNEQDVNEQSTASSRPRT
RSQTAAQREPLPPKVQRVGKFEVSRFIAENGIIDVAHLWAAGRARMEAGE
NDLAKFLIDRESRPKEISSLFEGNRKLDESLSPAERPPPRKRMEVLREVL
RGHCIEGCGGRWFTCAIEILEHNRITVGTYAKSMRLLFEKGRGKRRNMML
TGPKDSGKTFLMDPVRKIFKTFLNPADDKYTWQDAEDCEAMFFNDFRWSK
NMIRWNDLLVLLEGHPVRFPVPKNQRAKDILFTRDVPIFATSRSTVRLGK
GGGSYNDDVEEDDNNEGDDAVSRENGMMKVRWVVYNLPFTIRNIVELEAC
PRCYANLVFYGDATV Run BLAST on NCBI transcript from alignment at sc0000086:834447..838321+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008581 ID=TCONS_00008581|Name=TCONS_00008581|organism=Clytia hemisphaerica|type=transcript|length=3875bp|location=Sequence derived from alignment at sc0000086:834447..838321+ (Clytia hemisphaerica)
aaaaaaaattgaaaggggTTCCCTTGTATCTTACATCACAGTTTTGAAAA
AGATGGAAGCTCCCAGTTGCTAAGCCCACCAAAACATATCCGTCGACCAT
GTGCGAGCGTTTGAGTGGTTTCAGAGTATACCAATTAGTTCGCCATGTCT
TTTGGGTTGTTTTGAGTTatagcaaagaataaaatgacgtcataagcgCG
GGAAAATACGAAAATTCGCGCCGAATTCGCCACGTGCAGGGGTAGTCAGG
CCTTGCATGAATTTCTCTCCCATAAAGAAGGTAATTTGACCATGGAACAT
GGTCCAAGTATAAAAGAAGAACAACAAATCAGACATGCCTATTTGCATTC
ATAAAGCAGTTACATCTACTATTTACAGGTATGTACATAAATAAAAAGTA
CTTTCTATCAATATCAAGATATAAACATATAAACAATAAGAAGCTTAAGT
AAAATTTCTAAACACAAGAATGATTCCGTTGAACTTTGGCAAACTTTAAA
GTCTTGACTTGTGTATTGTTTACTGCCTTTCAGAATGAATGGAAAGGGAA
AGCACACCGGCACCAAAGCACCGCTAAGCTCATTGCAACCCCGACAGCTG
CGCACAACGTACCTGATAACCTACAGCCAGGCCGACCTAACCAGATTCCC
CGACCGAGAAGACTTTGCACGACTGGTTGTGGGTCTGTTCAACGAGACGG
AAGGTGTAGGACGGGTTGATTATTGGGTCTGTGGCAAGGAGGAACACCGA
AACACTTCTGGGTATCATTACCATCTCGCCCTGAAGTTGACAGACGGTAT
CCGCTTTGATAGTGTCCAAGCCCGCCTGGTCGAGGAAAATGATGTGAAGG
TCAATTTTCGAGACGACTATGACCTGTATGTTTATGCACAGCGTTATTGC
GTCAAAGAGGACGACGGTGCTGTCTACAGCCCCAACCACCCCCCAGTTGA
AAGCATGAAGTCACCCCGAACGAAAAAGGCAGTTGCGCAGAGACGGGCCA
ATGCCAGAGCCAGGAGAGAAGCCAGGGAGCAGGATGTCAACGAGCAGGAT
GTCAACGAGCAGTCCACAGCTTCTAGTCGGCCAAGAACCAGGTCACAAAC
CGCAGCTCAGCGTGAGCCACTCCCACCCAAGGTGCAACGTGTCGGTAAGT
TTGAGGTTTCCCGTTTCATTGCTGAGAATGGAATTATCGACGTTGCTCAC
TTGTGGGCGGCAGGTCGCGCACGCATGGAGGCTGGGGAGAATGACCTGGC
AAAATTTCTAATCGACCGCGAATCCAGGCCCAAAGAGATTTCCTCCCTTT
TTGAAGGCAACAGAAAGCTTGATGAGTCGCTCAGTCCTGCTGAACGCCCT
CCCCCTCGCAAAAGAATGGAAGTCCTCAGGGAAGTCTTGCGTGGCCATTG
CATTGAGGGGTGTGGCGGCCGTTGGTTCACGTGCGCCATTGAGATCTTAG
AACACAACAGGATTACGGTCGGCACGTACGCCAAGTCCATGAGGTTGCTC
TTTGAAAAGGGAAGGGGCAAGAGAAGAAACATGATGTTGACTGGGCCCAA
AGACTCCGGCAAAACCTTTCTGATGGACCCAGTCCGAAAAATATTTAAGA
CTTTCTTAAACCCGGCCGACGACAAGTACACATGGCAAGATGCAGAGGAT
TGCGAGGCCATGTTCTTTAATGATTTCCGCTGGTCTAAAAATATGATAAG
GTGGAATGACTTGCTCGTACTGCTCGAGGGCCACCCTGTCCGCTTTCCCG
TTCCCAAAAACCAAAGGGCCAAAGACATTTTGTTTACGCGGGATGTCCCA
ATATTTGCAACCAGCCGATCTACTGTCAGGCTTGGAAAGGGCGGTGGATC
CTACAATGACGACGTTGAGGAGGACGACAACAACGAGGGAGATGATGCTG
TGAGCAGAGAGAATGGGATGATGAAAGTCCGATGGGTTGTTTACAATTTG
CCATTCACCATCCGTAACATCGTTGAGCTGGAAGCGTGCCCAAGATGCTA
CGCAAACTTAGTGTTTTACGGTGATGCCACCGTGTAATTTTGTATAGTAT
TTATTAGTATTTATTCCGTCGTCATTGTAAGATACTTGATAAAACCCTTC
ACCGACCTAATCTCATGTGTACGCTTATAATTCTTTGCAAAGACTATTTC
ATAATATGCCCGATTTAAATTCCacgacactttgaaaatcttaattAAAA
AAGCTGACAGTATTTTTTCATAATATCCCTGATTCTAATAATACAGTCTA
AAGAATGTTTTCCAGCTTCTCCGGCTACTTTGCGGTCCAAAGTCTACATT
AATCCACAATTAACCACAGTTAACCGAGGGCTGCTCTTTAAAAGAAACTT
TAGATAATATTAATGTTCTTTATGAAAAAGGAGGAGGTTAACTGTGGTTA
ACTGTGGTTAACTGTGGTTAACTGTGAgtattatttgaaaaatatcaaga
aagaGCAACACAAGAGCATATGTAGCCAAAATCAATATCTCAGCCTGCCA
CCACgcctttttataattttgtccAACCGTTTCGGCATACTACCAATAAT
TCGGTCAATCATTCCAGCGTCAAAGTTCTCAATGGTTGCCTTCACCCGGG
CACTGAATTCGTTGAAACTTTCCTTAGTAATTCTGTTATCCAATGCATCC
TGCGAAAGTTTTCGACTGACCAAGTTAAAAAAGTTCTCAATGGGATTAAG
GTCTGGACTGCGCGGTGGAATGGAGAACACTTCGGCTCCAATGTCCTTGA
TTGCCTTCTTAGCCTTGGCAGAATTTTGAACAGGACAACCGTCCTGTAAG
AAAGCCTTACCCCGGATGTGTCGAGTAGATTGATAGATTGCAGGGAATTC
CTCACGCACCATTTTAGCGAAGCTGTCACCGTTCCATCTGTTGTGGTACT
GGCGACAAAATACCACACCACGGTTCGGACAAATTGCCACCATGAAATTG
GACATGCGGCCCCCTGTACCTGCGCGTTTACCTTTCGTCGTGCACTGGCC
ACTCAATCCTTCGGCTCTTCGACGCCAGGCCATAGTTTTGGTGGAGCGGG
CCTCATCATGTGGGTTGGTCTTGTGTGTGAACCCGGTACCATCCAAATAG
AAATTAATATGCTTCATCCAAAAGTTCTTTGGCAGTTTCCGGGCATTCCG
GGCAAATGCCAAACGTTTATGCAAGTCTGTGTTTTTCATAATCCCTTTAC
GACGGGAGTGAAGATATCTGTAGCCATGTCTTCGCATAACTCTACCAACA
GTGGCCATGGAAACTGTCTGGTCAATTCCGGCCTCCACAGCAAGTCTGCG
CAAAGTAAATGGGCCGATCGTGCTTCTCATACGTTTGATGTGGCGAATAA
GGTTTCTCTCGTCACGCGGGGTGAGTCTCCTTGGACGTCCAGGATTTAGT
TTTCGTTTATCGTGTGGTCGGTTGAGCGGCCTCTTCACATGTCTAAAAAC
GGTTGCACGGCTGTATTTTGGAAACTTCTTCATGATACGGCTGACCGGCA
TCTTCAACTCCACATACAGGAATCTCATGTACAGGGAATCAGCGATGGAG
ACTTTGCTCTGTTTTCTGCGCATGCCATCCATTTGTCGTTCAGTGATCAA
TTGattaagtaagtaagtagtttttcttttatttcatttattttttctgt
aaTGAGAAATATGTATATATGTAATAAACAATTGAACAAGATATTGAGGT
AAAATAAAGGCGGCCGGGTCACTTCGTGTTAATTAATGATGTCGGTTAAT
CGCCTGCGTTTTTGTTTTTACTACGTTACAGTTTGGTCCATACTTTCGCC
TTTTACGAAACACCTGGCCGGGTGACAATGGTATTCTCAAAACGCCCCCA
CTGTAGGGCGAGGCCacgtgcaaaa Coding sequence (CDS) from alignment at sc0000086:834447..838321+ >TCONS_00008581 ID=TCONS_00008581|Name=TCONS_00008581|organism=Clytia hemisphaerica|type=CDS|length=1548bp|location=Sequence derived from alignment at sc0000086:834447..838321+ (Clytia hemisphaerica)
ATGCCTATTTGCATTCATAAAGCAGTTACATCTACTATTTACAGAATGAA
TGGAAAGGGAAAGCACACCGGCACCAAAGCACCGCTAAGCTCATTGCAAC
CCCGACAGCTGCGCACAACGTACCTGATAACCTACAGCCAGGCCGACCTA
ACCAGATTCCCCGACCGAGAAGACTTTGCACGACTGGTTGTGGGTCTGTT
CAACGAGACGGAAGGTGTAGGACGGGTTGATTATTGGGTCTGTGGCAAGG
AGGAACACCGAAACACTTCTGGGTATCATTACCATCTCGCCCTGAAGTTG
ACAGACGGTATCCGCTTTGATAGTGTCCAAGCCCGCCTGGTCGAGGAAAA
TGATGTGAAGGTCAATTTTCGAGACGACTATGACCTGTATGTTTATGCAC
AGCGTTATTGCGTCAAAGAGGACGACGGTGCTGTCTACAGCCCCAACCAC
CCCCCAGTTGAAAGCATGAAGTCACCCCGAACGAAAAAGGCAGTTGCGCA
GAGACGGGCCAATGCCAGAGCCAGGAGAGAAGCCAGGGAGCAGGATGTCA
ACGAGCAGGATGTCAACGAGCAGTCCACAGCTTCTAGTCGGCCAAGAACC
AGGTCACAAACCGCAGCTCAGCGTGAGCCACTCCCACCCAAGGTGCAACG
TGTCGGTAAGTTTGAGGTTTCCCGTTTCATTGCTGAGAATGGAATTATCG
ACGTTGCTCACTTGTGGGCGGCAGGTCGCGCACGCATGGAGGCTGGGGAG
AATGACCTGGCAAAATTTCTAATCGACCGCGAATCCAGGCCCAAAGAGAT
TTCCTCCCTTTTTGAAGGCAACAGAAAGCTTGATGAGTCGCTCAGTCCTG
CTGAACGCCCTCCCCCTCGCAAAAGAATGGAAGTCCTCAGGGAAGTCTTG
CGTGGCCATTGCATTGAGGGGTGTGGCGGCCGTTGGTTCACGTGCGCCAT
TGAGATCTTAGAACACAACAGGATTACGGTCGGCACGTACGCCAAGTCCA
TGAGGTTGCTCTTTGAAAAGGGAAGGGGCAAGAGAAGAAACATGATGTTG
ACTGGGCCCAAAGACTCCGGCAAAACCTTTCTGATGGACCCAGTCCGAAA
AATATTTAAGACTTTCTTAAACCCGGCCGACGACAAGTACACATGGCAAG
ATGCAGAGGATTGCGAGGCCATGTTCTTTAATGATTTCCGCTGGTCTAAA
AATATGATAAGGTGGAATGACTTGCTCGTACTGCTCGAGGGCCACCCTGT
CCGCTTTCCCGTTCCCAAAAACCAAAGGGCCAAAGACATTTTGTTTACGC
GGGATGTCCCAATATTTGCAACCAGCCGATCTACTGTCAGGCTTGGAAAG
GGCGGTGGATCCTACAATGACGACGTTGAGGAGGACGACAACAACGAGGG
AGATGATGCTGTGAGCAGAGAGAATGGGATGATGAAAGTCCGATGGGTTG
TTTACAATTTGCCATTCACCATCCGTAACATCGTTGAGCTGGAAGCGTGC
CCAAGATGCTACGCAAACTTAGTGTTTTACGGTGATGCCACCGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008581-exon-sc0000086-1491911889:834447..834824 | TCONS_00008581-exon-sc0000086-1491911889:834447..834824 | Clytia hemisphaerica | exon |
| TCONS_00008581-exon-sc0000086-1510915933:834447..834824 | TCONS_00008581-exon-sc0000086-1510915933:834447..834824 | Clytia hemisphaerica | exon |
| TCONS_00008581-exon-sc0000086-1575043694:834447..834824 | TCONS_00008581-exon-sc0000086-1575043694:834447..834824 | Clytia hemisphaerica | exon |
| TCONS_00008581-exon-sc0000086-1491911889:834980..838321 | TCONS_00008581-exon-sc0000086-1491911889:834980..838321 | Clytia hemisphaerica | exon |
| TCONS_00008581-exon-sc0000086-1510915933:834980..838321 | TCONS_00008581-exon-sc0000086-1510915933:834980..838321 | Clytia hemisphaerica | exon |
| TCONS_00008581-exon-sc0000086-1575043694:834980..838321 | TCONS_00008581-exon-sc0000086-1575043694:834980..838321 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:834447..838321 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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