TCONS_00008586 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008586
Unique Name	TCONS_00008586
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1479

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000086:892776..900562+

transcript sequence

>TCONS_00008586 ID=TCONS_00008586|Name=TCONS_00008586|organism=Clytia hemisphaerica|type=transcript|length=1479bp
AGGTCTACAAGATAGACGTTATGTCCCAAACATCACACTGGTTTGTCTTT
AAACGATACAAAGAGTTTTATAACTTACATCAAAAGTTGATCAAGCAGTA
CAAAATCCCAAAAGATCTTTTACCGCCTcgaaaaataacaaataatATGG
CAAAAGAGACATTGGAAAATCGAAGAGAAGCTTTGGAGCACTATCTACAA
AAGCTGCTTAACAGctgTAATACTGGAGTAAGAAGGTCTGaagatttggc
tgaatttttagatGTCAAATCTCATGATGTTCCTCATGTTACACATGATT
TGACAAGATACATATGCAAGCATGGGCAAAGTATTCTACTATCCAAAGAA
ATGTTTCGTATGTCTCCAAGCCAACTATATTGCATCACCAAGCAGCTACA
GTTACCACATCCTTCTGGCAGAAATAGCGTAGACCTTGGCTATCTGTATG
AGTTTGTGAGCGAATTAAAACGACTAAGTATCACAGATTTTATCTCCCAA
ATGAGCAATGGAGAACAACATGAAATatctttcactttcgatttgtCAAT
TTTCACAAAGTTACAGGAGTTGCAGatGGACGCAATCAATGTGGAATCTT
TGAAAGGTGTCCAAAGTTTGAATTCCAAGTTAGTCAAATTGACTGCACGA
CATTGTATCAATTCAATGAAGtCCATACTTATTGATGCTGCTATCGAAAA
GCGAAATGCACCTCAAGTTAGCCATCCTGGTGAAAATTGGAGGATTCAAG
CTGCCTATCGATTAGCTGAAAACAGgATAATTTTTCAACCGTGGCACACC
TTAACGCACATCAATTTCAGTCATAATAACATCATATCATTTGATTCATC
AATGTCTCTACTGCCAGCTCTTCGAcagCTTGATCTCAGTCACAACAAGT
TGACCCATCTGGACTTGGATTTGGTCACGGCACCTATATTGCACAGTTTG
TCGCTTTCAAACAACTCCATTTATCTCATCTCAGGATCAACCAAGACGAT
TGATAATCTACGTCATTTGAATCTGAGCCACAATAAAGTTAACTGCTTAG
AAGGGCTTTTCTGCTGCCAAGGGCTTGAAGAATTGAACCTGACATACAAC
AATATCGCTGCTATTAACGAAGTCACAAAACTCTCTTCACTATCAAGACT
GTCGAATTTATTGGTTGAAGgAAATCactttgcaaagaaaaaaagacatc
GGATCATCATATTTGCATATTTTCGTGAACGACAGTTGCTTCTTGATAAA
AGGCCAATCACTCAGAAAGAAATGGCCAAACTGAACTCCAAGTTAGCTGC
TTTACAACGCTTCGAGGATATTGACGATAGTCTGAGTAACATCAGTACTG
TATCGGATGACAGTGAGCCCGATTCGGGTTATGATCACTCTAACTGGGTT
TCCAAATTAGCTGCTTTATCCGAAATCGAGGAATCCGATTATGAAGTTGT
TCCCCGATTAAATTGGCCGGAAATTTGTA

Run BLAST on NCBI

transcript from alignment at sc0000086:892776..900562+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008586 ID=TCONS_00008586|Name=TCONS_00008586|organism=Clytia hemisphaerica|type=transcript|length=7787bp|location=Sequence derived from alignment at sc0000086:892776..900562+ (Clytia hemisphaerica)
AGGTCTACAAGATAGACGTTATGTCCCAAACATCACACTGGTTTGTCTTT
AAACGATACAAAGAGTTTTATAACTTACATCAAAAGGTAACAGGTTCATT
GATCAATTGcaataaagatttgaaaacactgATCATaatctttgcaaatt
ttttattgattggtacagtttttcatttcatctgttttcgattttttctc
AGTAATTTCATTACTGTCAATATATCTTTGATTATCGTCCACCTCTAGGC
AAAACGCactgtcgaatatttttagatatccgatagctaaatatctcttc
tgtagcataaaaaaaacagaaaaaaatagtCTTTTGATCAAATAATTATT
CAAATGTCACATatataaaaacagataaaagaaagctcattttattaaca
aaagagaaaggaaattcgaacgttttgtaattaaaagagaaaaaaacaat
gaaattgacatcCTTAAATAAGAaagtaaaacgttcgaaaaatGTCATAA
AGAGGGAAGGACTGAATGAAAtagtgaaaaattaaaatgcgTTTCTGCTA
ATTGGTGAATGATaaaccaacgatgtaaaaataatagataaccaactacc
tctagaaggcacttctcccaagagaccaaccattgttttcctattgaaat
gagcactcctttaaatagctctgtgtgcagtgcgtgttatgcttttagct
agattttgacacactttttgacatcNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaattgact
acggatcggcctgataacacttaatcttcatctggataaataaacgctca
tacaatgatgttatctgaaaaatatatgtgtgatttgaagtgcgatatct
cacgaatgaaaagtgcatgaaggttgcctgatacaaaataaacagatgac
tgtttatagaacaataatatctaattaaaagattccttctgtgaggctgc
ctataggaaaatacactttttctaacccaaattttggaaaaaaatacatc
acgtgatcgattctgtccaatagaaggttgcaaatgaagcaagtttttat
ttaattgcactttttacgatgcaaaatgtcattaatatttttacaaccgt
aacacggatgttttttgagaatcaaggcaagttggttatctattattttt
acatcgttggataaaccatatattcaactcgctttaatgatattcatatc
atcaagctcgactgaataattttcgatatccgatttttcttgttgaatat
ctgcttatagttttgcagattttaaaagttataacAGAAAAGTGTTATTT
TAAtttattctgattttttttcgcAAATCACTACCCATTCCATTATGCTG
TTTTATTATACACAGATCTGattaaattttacttttgaaactaATTTCAA
TCATTATTTTAGTTGATCAAGCAGTACAAAATCCCAAAAGATCTTTTACC
GCCTcgaaaaataacaaataatATGGCAAAAGAGACATTGGAAAATCGAA
GAGAAGCTTTGGAGCACTATCTACAAAAGCTGCTTAACAGGTATTTTGCA
CTCTTTCAGGGCAactggaaaaaaattgaaaaagtagttcTTAAGTTGTA
TGAAACAAACTTCaatatgatgaaaataagaataagAAAGAAAGCTTTTT
TTATCCCAGGAAAACTGTCATCTTAACTGAGAAagagagtttttttttaa
taaacctAGAATTTCGTTTTGATAGttatttctaatcaactgatgaatgc
gtaagCTAGAAACTTAATAAAGTATTGAGAAGAATATACaccgtttctta
atctttatgtaaCAAGCTCTACTCAAGTATTGAGCACTCTTAATTGTGCA
GAGAAACACAAGAAGAGAAGGAGGGGCGCATATCTCTCTggaatttggaa
aatataagcCTTGCCAAATATCAATTTGAACCCTCAGGTatttaatcttt
gttttttaagtgtagaatatttttcataaaattcccttctttttttttaa
gctgTAATACTGGAGTAAGAAGGTCTGaagatttggctgaatttttagat
GTCAAATCTCATGTGAGTAATTACGTTATGACTTAATCAATGTgacattc
aaaatattgttattaAATCAaatttggacctaccccgggggaggtcctat
aaattaacctttgtccgttcgttcgttcgttagttaccagcttttctcga
gattggctcattagttttttcttattttttgcacaatgatgcataacaat
aaaccctcgaatgtgacagatcccgattttcgaaaaaacaattttttggg
caaatttgggccaaaaaacggctaaaaaacaggttttttggactttgtga
aacatgatctttgtaaaaaaagaatttttcagctcaaaaaatctatatct
ataagaatcactaataataaacacacatcaatgttcttagccaaattaat
caattttttgatgagatagatgtttttttttgctcacgaagtcttgaata
tgaaagaatatttcaagagcatgaaattttggtttctaaacgtttttttt
tataaaaaacaaacgaCTCATTTTAAttgatcgtcactatttgtgttctg
aatgattgtttaatggtcacgcttatgtagatatcaattataaatgtgtt
aaatgcataaccaggtaggtccataaaagtcgTTAATTTGCTatttagat
aaaaatattttgggctTACTCTCAGGTACATGGTAGAGGGAGATGGTAAT
AAGTGGGCTGGGTGGAAAACTAATCTCAGAGCTTGATGAGAAAACAGGCA
GAATAACAACCTCTTAGTCAGAACAATTTGAAAATCTAAAGGAATTGAGG
TAAAGAgtcgacttttgaaaataaaagagttAGTGACATTATTTAGTCAA
CTATAGTCTTGATTTCAGGATGTTCCTCATGTTACACATGATTTGACAAG
ATACATATGCAAGCATGGTATGCGAGGGTTTGTTGATTACAAGGATACAA
GTTATTTTCATTATTCGCTTTAATGTGTACTGTAATGTAATTGGCTGAAA
TTATTTGTTTTCGAAGGAAGATGTTTTCCCTCTTACATAGACCTGCCATA
CTAAgcgaatttcagattttttcgaATTAGTCTCTAAGGTGTTTCTAATC
AAAGATTTTATCCTGTTGATTTCATGAACTTTTCAGGGCAAAGTATTCTA
CTATCCAAAGAAATGTTTCGTATGTCTCCAAGCCAACTATATTGCATCAC
CAAGCAGCTACAGTTACCACATCCTTCTGGCAGTAAGTTGAACgcaattt
ttttgttaaaattagtCAATCTACGATTGAACGGAACACGTGGGTTTTAG
CATTTCATAAGCCTCTTTTCTCGACAACAGTATACCACTCTAAAACAAGG
AAAAGCGAATACTTATTTGAAAACCTTACttgatttcatttcttttccTG
ATTTCCTTTAGGAAATAGCGTAGACCTTGGCTATCTGTATGAGTTTGTGA
GCGAATTAAAACGACTAAGTATCACAGATTTTATCTCCCAAATGAGCAAT
GGAGAACAACATGAAATatctttcactttcgatttgtCAATTTTCACAAA
GTTACAGGAGTTGCAGGTGAGCTTTACAATTAAATAACCATAACGACTTT
GAAtggaaaaatgttcaaaaagttGGTCCATTTTCGGCTATTTTCGGGAT
ACTTTGGAGGTCTATAACTTTTAGTTTGTTATGAAATAAACATAGGAATA
CTCATTTAAAATCAGAAAACTTCAAAGTCTCAGAGAAAGTGTATTCTCAC
GGCTTTTGGTCCAAtagaaaacattttcatttgttgctttaatcattttt
cgtcttcattttttgaaattcgaaaTCATTTTAAAGATTAAAAGAAAAAG
CCTTTAAATAATCCGATTGAACTTATCTTTCATACAAGTAATTACTTAAT
TTTGTTAAATCTCTCAATTTTTTCGAAGCAGACTTGAATAATATTGACAA
CAATAATTCCCTGTCTTATATTTTGGATTCAGGTTGACTTTTGGTACACC
GAAACTTTTTGAAACGCTTATTaggattttgagacttttttgaaacaaCC
TCGCTAAGACCATGTCATAATCATCCAAAATGGCTTAAAATGAACCCTTT
TTGTCAATGGATGGTTTTGCTATATTTGCTTCAAACTCACCGACgtaatt
tttgatttcattgattGAAAAGCCATaattaacaaacttttttaaaattt
tattagatGGACGCAATCAATGTGGAATCTTTGAAAGGTGTCCAAAGTTT
GAATTCCAAGTTAGTCAAATTGACTGCACGACATTGTATCAATTCAATGA
AGGTAATTAGAATCTTGTTTAAAAGGTTTCAAGTTCTCCTCTTCAGgttt
tatctgattatttttctCTCTACTCTACGTATTATCTTGTGAATCCGTCT
CATAGAAAATTAATCAATTTGAAcgatacccctgtctcagtgacctcaca
attttcgaaaaagaacaATTTCTTGTTTACAATTTATTGTGGCAATGTCA
AAAAATGCACCACTGGGTCTGTGTATAGTAAGTTCGCCTCTGTAatgata
tatttcaattttgtttttagtCCATACTTATTGATGCTGCTATCGAAAAG
CGAAATGTAAGTGATTGGTTAATTGATATATGTGGTAGGAGTCTTTATTA
TTGAGCATCAGTCTAAAATTATGTGACTAAATTAATTAAATAATTCTAGA
ATATAAGGGAATAAGGttagacttttttatttttccgaaCACTTGCAGAG
ATTTGAATGCTCAAATGAGAttggtaaaaattgaaaaattacgaacaatt
tttaaattttcagtccTGTTCAGTgtcattttcaaacttttctatgttCT
TTAGGCACCTCAAGTTAGCCATCCTGGTGAAAATTGGAGGATTCAAGCTG
CCTATCGATTAGCTGAAAACAGGTTCAGTATGAACTTATGAACTTATTAA
ACTATTAACTCATATTGTTTTGAACTGTCCAGCTTTCGATGACGATATAG
AAattgaatttatatttttcttttgtgaaagaattttttttttacctgaA
TATTAAAGGTTGtcagtttttcttgatttttaggATAATTTTTCAACCGT
GGCACACCTTAACGCACATCAATTTCAGTCATAATAACATCATATCATTT
GATTCATCAATGTCTCTACTGCCAGCTCTTCGAcaggtttgttttttctt
tttgtcaatGTTATACAGTATTGGGCTATTGGACCCCCCCtagacattca
aaattaccctgaAACAGCataattacccccaaacagagcaaatttaccct
cAGACAAGGCAGATCTTGTAgattttcactacccccggtcactatatcct
ccaccccctatgTACGGACATTTTGTGGATTAGCCTATTCTAACAAGTTA
TAATAAACAAGTTAAAGTTTATACATTGCGTTTAATTAATGCTGAAGTTA
GTCATTGTTTTAAGAAACAAGCTTTTAGTCGTTGAAATTCCGAAAACTAA
AATGCATTATTGATTTCATTTCTTCTAATTAAATGATTAATCTTTTACAT
CAGCTTGATCTCAGTCACAACAAGTTGACCCATCTGGACTTGGATTTGGT
CACGGCACCTATATTGCACAGTTTGTCGCTTTCAAACAACTCCATTTATC
TCATCTCAGGATCAACCAAGGTATTTATGCTTATATACACATTGTTGGGA
AAAGGAAGCCCCTCCCCCAATCTACCAATTTAGATCAATTCCCATACTCT
AGATTCTTCTCCCGTTTCAAAATCTGATTTAACTACTGTAGACATCAGAT
GTCTCCTTTTTTACTACCCAAATTAACCTTAATTATAGTTTATTAGCCTT
TTGATGACCTATTGCCATTTTGAGGACTGCAAACGATTCGTGGGTAGCTC
GTTTTTTTAAAACGTTTCGTTTTTTCACTTTTAGACGATTGATAATCTAC
GTCATTTGAATCTGAGCCACAATAAAGTTAACTGCTTAGAAGGTACGTTT
TTGTTTCCCTTATGTCAACAACTAAATCTAAAAGGTTTTACTCGTCGGTC
CACTGTTATTTGTATGTGAGTGGCCCGGCTAAAACTAATCACTTGATCAT
ATTAAAAGCTTCTCTTCGATGAGAAGTCTCCAGTGGTTTAATTAAGGGGG
TGAATTTCGAAAAAACCGTAATGCGATAAGGGAAATAACGGATGTATATG
TTTTTTGGTTAAACTCTTCATTCTGAAAAGGTAATTGCAAAACCTATCAT
TTATACCGAGCCGTGATACGTTATATTCTCTCTTTTTCTAGGGCTTTTCT
GCTGCCAAGGGCTTGAAGAATTGAACCTGACATACAACAATATCGCTGCT
ATTAACGAAGTCACAAAACTCTCTTCACTATCAAGACTGTCGAATTTATT
GGTTGAAGGTATTATTACCCTATATAAAACAATCTCATATAGTTTCTGCG
TTCTTCTATAAAAAAATACATAAGAAGGGTAAAAATACATTTTTCAGTAG
TTAACCCCCCCCCCCAGCCATGGAGATTCTGACTGCTTGGACAAGATTTC
ATCCCGAATAACTAGCTTGACCCCTCCCCCGAACAATTTGTATTTGCCCC
TTAAAGGTGAAAGCTTGCCTCCCGGACAACACATCCTCCACCCCTTTGTA
CAAACCTTTCTGGAAGAGATCCATACCGAATCTTACTACGGAAATTATAA
GTTATAAATTATAAGAGTTTTGGAGCCATTGTAATACTTTTATCTCTGAC
ATTTTTCTactttaaaatgcattttattatatttaggAAATCactttgca
aagaaaaaaagacatcGGATCATCATATTTGCATATTTTCGTGAACGACA
GGTATAGTAGATAAAACAGAAGTCTCAAAATTTTGAGTCTTCACACAGTA
TACgggttaaatttttttatctctATTACAGCTTTTAGCTTTTGGAAAAT
GATTGTCGTAGAAAAACTTTCGATgacagttttaaaatttttcagaagaa
atggaaaatggaaatatcaaaaagtatcattgattatccctttaattttt
ttaatcatactTTTGAGTGATATTTTATCTATCGTTATGATTCTTCTTTT
TAGTTGCTTCTTGATAAAAGGCCAATCACTCAGAAAGAAATGGTAAGTTG
GTGTAGCGTTTAGAAAATCTTATTAGGTCTAGCTTAGAGAAGAGGATTAA
ATTTTGTTTCAGTTCACTAAAGCTTTTGTTTTGTTCAGCGACAgttgaaa
taaacaaaataatatcTTATATCTGgtattaaaaatttttattttcacag
tgtttcaatttgaatttttttttcaccaaCAGGCCAAACTGAACTCCAAG
TTAGCTGCTTTACAACGCTTCGAGGATATTGACGATAGTCTGAGTAACAT
CAGTACTGTATCGGATGACAGTGAGCCCGATTCGGGTTATGATCACTCTA
ACTGGGTTTCCAAATTAGCTGCTTTATCCGAAATCGAGGAATCCGATTAT
GAAGTTGTTCCCCGATTAAATTGGCCGGAAATTTGTA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004804	XLOC_004804	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000086	supercontig	sc0000086:892776..900562 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.41582	1.16497	0.667216	0.26231	3.7214	1.7368	2.33496	2.50234	1.39638	3.41188	1.22083	0.600851	1.96171	1.68861	2.22341	1.78437	1.75384	1.37097	4.10063e-07	1.53555	0.050872	0.380337	0.912522	2.65778	4.28729	3.36566	1.27771	0.846138	0.500793	2.01403

Blast

[Close]

BLAST of TCONS_00008586 vs. Swiss-Prot (Human)
Match: NISCH (Nischarin OS=Homo sapiens GN=NISCH PE=1 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 1.877e-48
Identity = 140/463 (30.24%), Postives = 219/463 (47.30%), Query Frame = 3

Query:    3 VYKIDVMSQTSHWFVFKRYKEFYNLHQKLIKQYKIPKDLLPPRKITNNMAKETLENRREALEHYLQKLLNSCNTGVRRSEDLAEFLDVKSHDVPHVTHDLTRYICKHGQSILLSKEMFRMSPSQLYCITKQLQLPHP---SGRNSVDLGYLYEFVSELKRLSITDFISQMSNGEQHEISFTFDLSIFTKLQELQMDAINVESLKGVQSLNSKLVKLTARHCINSMKSILIDAAIEKRNAPQVSHPGENWRIQAAYRLAENRIIFQPWHTLTHINFSHNNIISFDSSMSLLPALRQLDLSHNK------------LTHLDLDLVTAPXXXXXXXXXXXXXXXXXXTKTIDNLRHLNLSHNKVNCLEGLFCCQGLEELNLTYNNIAAINEVTKXXXXXXXXXXXVEGNHFAKKKRHRIIIFAYFRER--QLLLDKRPITQKEMAKLNSKLAALQRFEDIDDSLSN 1340
            VY I V   +  W V  RY +F++LH+KL+ + KI K+LLPP+KI    ++  +E R + LE YLQKLL +      R   LA FL    +++  +T  L   + + G+ +L + E+F + P QLY +T+QLQ   P   SG    DLG++ +F   LK L ++            E    FDLSIF  L ++++   + + ++G+ +    L  L+ R    SMK +L+  A E           + W  +          +   W  LT ++ SHN++   D S+ L+P +  LDLSHN             L HLDL              N    L    TK + N++ LNL+ N +  L GL     L  L+L  N I  + EV  + SL  L ++ +  N  +    +R  + A F ER  ++ LD    T+KE+  +   L A+Q+ +++   LSN
Sbjct:   32 VYIIQVTDGSHEWTVKHRYSDFHDLHEKLVAERKIDKNLLPPKKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRV--LAHFLHFHFYEINGITAALAEELFEKGEQLLGAGEVFAIGPLQLYAVTEQLQQGKPTCASGDAKTDLGHILDFTCRLKYLKVSGTEGPFGTSNIQEQLLPFDLSIFKSLHQVEISHCDAKHIRGLVASKPTLATLSVRFSATSMKEVLVPEASEF----------DEWEPEGTTLEGPVTAVIPTWQALTTLDLSHNSVSEIDESVKLIPKIEFLDLSHNGLLVVDNLQHLYNLVHLDLSY------------NKLSSLEGLHTK-LGNIKTLNLAGNLLESLSGLHKLYSLVNLDLRDNRIEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDYRTKVLAQFGERASEVCLDDTVTTEKELDTVEV-LKAIQKAKEVKSKLSN 468

The following BLAST results are available for this feature:

BLAST of TCONS_00008586 vs. Swiss-Prot (Human)

BLAST of TCONS_00008586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NISCH	1.877e-48	30.24	Nischarin OS=Homo sapiens GN=NISCH PE=1 SV=3	[more]

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TCONS_00008586 (transcript) - C. hemisphaerica