TCONS_00008598 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008598
Unique Name	TCONS_00008598
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3397

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000086:105468..108864-

transcript sequence

>TCONS_00008598 ID=TCONS_00008598|Name=TCONS_00008598|organism=Clytia hemisphaerica|type=transcript|length=3397bp
CATTTTCGCTAAATACCACGTTTTTATGCAGCTAGCGTCGAGGAAGGTCT
GTTATTATTGTAGAAGAAGCATTTCATTTCTACAAAGGTTAAATATCGTG
ATCGTTAAATATTGTGATGGTATAAAAAACATTGGTATTGTAGGCAGGTA
CTAATTTTGGTTTTATCGGCACTTAATCGTGACACATTATCGACATTGTG
CCGACATCGCTTTGTGGCGTCGTCTTTAAAGTGTAAATTTCGGTAGCTCC
GAGAACCGACAATTGAGACAATAGCAATAGAAACTATTATCTAATCAAAC
AAAAGATTCTTGGACAATAAAACAATCGTTAACTTGTCGACAATAAAGGA
AAGAGGACAGaagtgaaaattattttatgcggttctattgttctataaac
aacCCATTGTTGTAAAGGAATTTTTTACGACTTCGCTGATAGGGAAGCta
tttatcaaaacaaagacgATATAGAATTTATTGATGAGAGAACAATAGAT
AAAACACAAAGTGATCAATAAAAGACAAAGAACTTTTATTACGTGAGAAT
CGCTACTTATCAGCTTGAGCTCTTTCGTAAAACATTTGAGCGATCAGAAC
TATTGTCGACTTGTCTTTATTCTCTTCCCTTTTCAAACCTTTGattattt
tgacaaatttgtcaaagaaaagaaaaatttgtcaaaatcttgtcaaaatt
atttaaaacattttcaagatCGGATTTTAAAAACCGGTTGCAACATTGTA
GCTGCAGAGGAAATCGTTGGACTTAGGAACTTTGGAATCTTATTAACata
tttcaatgattttgaCAGAAGTGGAGTTGTAAGTGTTACAATAATTTTGC
TGGCTTTCGTAAATTAAGCGTGAAAATACCAAAAGTTGTTTTTGTGATCC
TAAAGCTTTAACATTGAGGAAAATCGTGAATCGGAACAAATGGTTGCGAT
GTCGTTACTCATCGAGAATCTTTCATCCAGTATCGTCGGACACGATTTAC
ATTCACGACACCATCATGGAGGCTTGCGTGTGAAATCAGAATGCTCCGAT
CTTATCGATGGAATCGAGGATATGGAGAACGAGATTGTTATGACACGATC
GGGAAATACGACTTCCGTCATCGGATCACTCAGCGGCGTCAATTTATCCG
GAACTCTAGATCATCACAGCTCCAACTCCTCTACTAAAGACAATAATAAC
AATACTAATTCAAACAATAACAATTCTTCGAGCTCTTCGGCGAACGATAA
AGACACGGCGACAAACGATAAAGATCCTAACGTAAAACCACCATACAGCT
ACGTCGCTCTCATTGCAATGGCTATTAAAAACGCACCAGACAAACGCTTA
ACATTAAATCAAATCTACCAATTCATTATCGAGAAGTTTCCATTTTACGA
GAAANTTAAAAACGCACCAGACAAACGCCTAACATTAAATCAAATCTACC
AATTCATTATCGAGAAATTTCCATTTTacgagaaaaacaaaaaaggatgG
CAAAATTCGATTAGACATAATTTAAGCTTGAACGAATGTTTTATCAAAGT
ACCTCGCGAGGGAGGAGGTGAACGAAAAGGGAACTATTGGACTTTGGACC
CGGCATGCGAATACATGTTTGAGGACGGCAACTATCGACGTCGCCGACGA
ATGAAACGTCCTTATCGTCAATCGTCGCATTACCCCTACCCAAACGGATT
TTACGGCGGTGACTTTAGGTACGGCGCGTACAGCTGTTACTCCTCAAACT
GGCAAAGCCTCTATCATTCAGGAGCAACGTCGCATCCAAACTGGCGAAAC
AGTACTTCATTTAACTACCCTAGTTCCTCTCATACCAGTAATTTCTCTTA
CATTGACCCGACTGCCCACCATAACCTACCAGCAACAGGCTACGGGGCAC
CATACTACGGTACAAACAGTTCCTCATCAAGTTTAGGAACAACCTATCAG
GGAACTTACCAACCGCAGTACTACACAGGAGCTACCTCCTCTACCTACGG
AAGCTCGACCACTACCTACGGGAGCTCGATCACTACCCCTTCAACGGTAG
GATACAGCCAATCAGCATACGCTACATCAACTACGGCATACAAAAGTGAT
TCACACCCTACCACCAATTATCACGAACAATACTGGGCACAGCCTTCCTC
ATCAACGCCTTCCACTGGCGGCAACACCACCCCACAAACTGGTGTCTTGA
AATCGAACTATACTACAGACAGCCCGCCTTCACTTATGTAATTTTGTTAT
TGATAATTTTCGTTTCGGGGGAAGTTTACGTAATTTACTACAATCCATAT
ATACGTTTAACtaatacccagctggcacacgacgttgtttaaacgttcat
ctaatgttatatggacgttgtgaatgttagataaacgtcgaaaaaacctt
gtgtgccagctgggtaggtGAATTGACTATTCTTAAAAACTAACGCTTCT
TGTAGTCTTGTAGTCTCACtacatgaaaaaaattatcttacTTTTGTGCT
ACCGCTGCTAATATGAGATGCCAAATTAACATCTCAACTCTGATCttcag
aatattttttttttaacaactataatatcttttaatttttagttCTATTC
AACggactttttaattttcaaaactatATTCATTTTAgtataaaatatta
tttaataTCTCAGGAATTATTTTGTACCTCAAAtgtttataatttataaa
tcatactgcTCTTGTATAGGCTAAAAGCTAGAGCAACAGAGTCGATGTAT
CAGCATACAAAGGCTCAATGGATAAAGATTCCTTTGATAGATTCCTTTGA
TAGGAAACTTGTTTTTGTTAGCACGGGGACAGACTGAAGTCTCCTAGACT
GCCGCGGTAACATTGATACTGAAAAAATGCTAGAGCATCAGAGTCGATGT
ATCAGCAtacaaaaaaaagattcctttgATAGATTCCTCTGATAGGAACC
TTGTTTTTGTTAGCACGGGGACAGACTGAAGTCTCCTAGGCTGCCGCGAT
AACGTCGGTGCTGAAAAAAGGGTAAATAAACTAAAGAACTTTTTCAGAAT
CTTTTGAGAGGAACAAAAAAAAGGTATCAAAAATACACTCAATCAAAAAC
TAACGAAAAAAAACCGGCCGACACTTGTCATACCTAAGTGTTAAAACCCT
TATTTTGTGACTTTCTTTCTTTAATCCGATTATTAAGGTTTTATCACATA
TATAATACCGAATATTTGTAACAAATTTTCAATGCATAGAActtctttta
ttttcctttgtttGGAACGTCATAAATTAAGCTGTATTGACGGAATGTAT
AGCTCACACAAATTGTACAAAGTTTAAGAAAACCACAATTTTTCATATAC
AAGATGAGTAGGCCTTCTCATAAGCAATAATAGGAAGTTATATTAAC

Run BLAST on NCBI

transcript from alignment at sc0000086:105468..108864-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008598 ID=TCONS_00008598|Name=TCONS_00008598|organism=Clytia hemisphaerica|type=transcript|length=3397bp|location=Sequence derived from alignment at sc0000086:105468..108864- (Clytia hemisphaerica)
CATTTTCGCTAAATACCACGTTTTTATGCAGCTAGCGTCGAGGAAGGTCT
GTTATTATTGTAGAAGAAGCATTTCATTTCTACAAAGGTTAAATATCGTG
ATCGTTAAATATTGTGATGGTATAAAAAACATTGGTATTGTAGGCAGGTA
CTAATTTTGGTTTTATCGGCACTTAATCGTGACACATTATCGACATTGTG
CCGACATCGCTTTGTGGCGTCGTCTTTAAAGTGTAAATTTCGGTAGCTCC
GAGAACCGACAATTGAGACAATAGCAATAGAAACTATTATCTAATCAAAC
AAAAGATTCTTGGACAATAAAACAATCGTTAACTTGTCGACAATAAAGGA
AAGAGGACAGAAGTGAAAATTATTTTATGCGGTTCTATTGTTCTATAAAC
AACCCATTGTTGTAAAGGAATTTTTTACGACTTCGCTGATAGGGAAGCTA
TTTATCAAAACAAAGACGATATAGAATTTATTGATGAGAGAACAATAGAT
AAAACACAAAGTGATCAATAAAAGACAAAGAACTTTTATTACGTGAGAAT
CGCTACTTATCAGCTTGAGCTCTTTCGTAAAACATTTGAGCGATCAGAAC
TATTGTCGACTTGTCTTTATTCTCTTCCCTTTTCAAACCTTTGATTATTT
TGACAAATTTGTCAAAGAAAAGAAAAATTTGTCAAAATCTTGTCAAAATT
ATTTAAAACATTTTCAAGATCGGATTTTAAAAACCGGTTGCAACATTGTA
GCTGCAGAGGAAATCGTTGGACTTAGGAACTTTGGAATCTTATTAACATA
TTTCAATGATTTTGACAGAAGTGGAGTTGTAAGTGTTACAATAATTTTGC
TGGCTTTCGTAAATTAAGCGTGAAAATACCAAAAGTTGTTTTTGTGATCC
TAAAGCTTTAACATTGAGGAAAATCGTGAATCGGAACAAATGGTTGCGAT
GTCGTTACTCATCGAGAATCTTTCATCCAGTATCGTCGGACACGATTTAC
ATTCACGACACCATCATGGAGGCTTGCGTGTGAAATCAGAATGCTCCGAT
CTTATCGATGGAATCGAGGATATGGAGAACGAGATTGTTATGACACGATC
GGGAAATACGACTTCCGTCATCGGATCACTCAGCGGCGTCAATTTATCCG
GAACTCTAGATCATCACAGCTCCAACTCCTCTACTAAAGACAATAATAAC
AATACTAATTCAAACAATAACAATTCTTCGAGCTCTTCGGCGAACGATAA
AGACACGGCGACAAACGATAAAGATCCTAACGTAAAACCACCATACAGCT
ACGTCGCTCTCATTGCAATGGCTATTAAAAACGCACCAGACAAACGCTTA
ACATTAAATCAAATCTACCAATTCATTATCGAGAAGTTTCCATTTTACGA
GAAANTTAAAAACGCACCAGACAAACGCCTAACATTAAATCAAATCTACC
AATTCATTATCGAGAAATTTCCATTTTACGAGAAAAACAAAAAAGGATGG
CAAAATTCGATTAGACATAATTTAAGCTTGAACGAATGTTTTATCAAAGT
ACCTCGCGAGGGAGGAGGTGAACGAAAAGGGAACTATTGGACTTTGGACC
CGGCATGCGAATACATGTTTGAGGACGGCAACTATCGACGTCGCCGACGA
ATGAAACGTCCTTATCGTCAATCGTCGCATTACCCCTACCCAAACGGATT
TTACGGCGGTGACTTTAGGTACGGCGCGTACAGCTGTTACTCCTCAAACT
GGCAAAGCCTCTATCATTCAGGAGCAACGTCGCATCCAAACTGGCGAAAC
AGTACTTCATTTAACTACCCTAGTTCCTCTCATACCAGTAATTTCTCTTA
CATTGACCCGACTGCCCACCATAACCTACCAGCAACAGGCTACGGGGCAC
CATACTACGGTACAAACAGTTCCTCATCAAGTTTAGGAACAACCTATCAG
GGAACTTACCAACCGCAGTACTACACAGGAGCTACCTCCTCTACCTACGG
AAGCTCGACCACTACCTACGGGAGCTCGATCACTACCCCTTCAACGGTAG
GATACAGCCAATCAGCATACGCTACATCAACTACGGCATACAAAAGTGAT
TCACACCCTACCACCAATTATCACGAACAATACTGGGCACAGCCTTCCTC
ATCAACGCCTTCCACTGGCGGCAACACCACCCCACAAACTGGTGTCTTGA
AATCGAACTATACTACAGACAGCCCGCCTTCACTTATGTAATTTTGTTAT
TGATAATTTTCGTTTCGGGGGAAGTTTACGTAATTTACTACAATCCATAT
ATACGTTTAACTAATACCCAGCTGGCACACGACGTTGTTTAAACGTTCAT
CTAATGTTATATGGACGTTGTGAATGTTAGATAAACGTCGAAAAAACCTT
GTGTGCCAGCTGGGTAGGTGAATTGACTATTCTTAAAAACTAACGCTTCT
TGTAGTCTTGTAGTCTCACTACATGAAAAAAATTATCTTACTTTTGTGCT
ACCGCTGCTAATATGAGATGCCAAATTAACATCTCAACTCTGATCTTCAG
AATATTTTTTTTTTAACAACTATAATATCTTTTAATTTTTAGTTCTATTC
AACGGACTTTTTAATTTTCAAAACTATATTCATTTTAGTATAAAATATTA
TTTAATATCTCAGGAATTATTTTGTACCTCAAATGTTTATAATTTATAAA
TCATACTGCTCTTGTATAGGCTAAAAGCTAGAGCAACAGAGTCGATGTAT
CAGCATACAAAGGCTCAATGGATAAAGATTCCTTTGATAGATTCCTTTGA
TAGGAAACTTGTTTTTGTTAGCACGGGGACAGACTGAAGTCTCCTAGACT
GCCGCGGTAACATTGATACTGAAAAAATGCTAGAGCATCAGAGTCGATGT
ATCAGCATACAAAAAAAAGATTCCTTTGATAGATTCCTCTGATAGGAACC
TTGTTTTTGTTAGCACGGGGACAGACTGAAGTCTCCTAGGCTGCCGCGAT
AACGTCGGTGCTGAAAAAAGGGTAAATAAACTAAAGAACTTTTTCAGAAT
CTTTTGAGAGGAACAAAAAAAAGGTATCAAAAATACACTCAATCAAAAAC
TAACGAAAAAAAACCGGCCGACACTTGTCATACCTAAGTGTTAAAACCCT
TATTTTGTGACTTTCTTTCTTTAATCCGATTATTAAGGTTTTATCACATA
TATAATACCGAATATTTGTAACAAATTTTCAATGCATAGAACTTCTTTTA
TTTTCCTTTGTTTGGAACGTCATAAATTAAGCTGTATTGACGGAATGTAT
AGCTCACACAAATTGTACAAAGTTTAAGAAAACCACAATTTTTCATATAC
AAGATGAGTAGGCCTTCTCATAAGCAATAATAGGAAGTTATATTAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004809	XLOC_004809	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00008598-exon-sc0000086-1575043694:105468..108864	TCONS_00008598-exon-sc0000086-1575043694:105468..108864	Clytia hemisphaerica	exon
TCONS_00008598-exon-sc0000086-1510915933:105468..108864	TCONS_00008598-exon-sc0000086-1510915933:105468..108864	Clytia hemisphaerica	exon
TCONS_00008598-exon-sc0000086-1491911889:105468..108864	TCONS_00008598-exon-sc0000086-1491911889:105468..108864	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000086	supercontig	sc0000086:105468..108864 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.0116159	0	0.00741154	0	0.00768625	0	0	2.13502	1.99194	0	0	2.99657	2.47616	1.12879	1.3303	1.21358	1.01322	0	0	0	0

Blast

[Close]

BLAST of TCONS_00008598 vs. Swiss-Prot (Human)
Match: FOXL2 (Forkhead box protein L2 OS=Homo sapiens GN=FOXL2 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.471e-43
Identity = 81/121 (66.94%), Postives = 86/121 (71.07%), Query Frame = 1

Query: 1273 DPNVKPPYSYVALIAMAIKNAPDKRLTLNQIYQFIIEKFPFYEKXKNAPDKRLTLNQIYQFIIEKFPFYEKNKKGWQNSIRHNLSLNECFIKVPREGGGERKGNYWTLDPACEYMFEDGNY 1635
            DP  KPPYSYVALIAMAI+ + +KRLT                           L+ IYQ+II KFPFYEKNKKGWQNSIRHNLSLNECFIKVPREGGGERKGNYWTLDPACE MFE GNY
Sbjct:   50 DPAQKPPYSYVALIAMAIRESAEKRLT---------------------------LSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNECFIKVPREGGGERKGNYWTLDPACEDMFEKGNY 143

The following BLAST results are available for this feature:

BLAST of TCONS_00008598 vs. Swiss-Prot (Human)

BLAST of TCONS_00008598 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FOXL2	3.471e-43	66.94	Forkhead box protein L2 OS=Homo sapiens GN=FOXL2 P...	[more]

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TCONS_00008598 (transcript) - C. hemisphaerica