TCONS_00008635 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008635
Unique NameTCONS_00008635
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length913

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008635 ID=TCONS_00008635|Name=TCONS_00008635|organism=Clytia hemisphaerica|type=transcript|length=913bp
agcAGAAGAACTTCGAACCAACGGACGTGCGCAATGACGACACCAGTGCA
GTAGATTTCTTCACACAATACACAAAAGTTTTACAACAAGCTCACGGGAA
TATTGAAGATATTGACGAAGAAGCAATCAATGGAAATGATGATGTTGATG
ATGATGGTGGTGAAggtaaagaaaaacaggaagaagaaaaagaacaacAG
ATTCCTCTTCATTTTGATATTCTGATCAAGGCTTTGGAGAGATGCACCTA
TTTCAACTCAGCCCATCACCGTGAGATACAATTGAAATCGCTAGACGTCA
CTCAACACTGCGTCATCGCGTTAAGACAGCGTGAAAATGATTTGCTGCCG
GCTCTCCACAAAATCTGGCCAAGCGTCGTTACAAAGCTTCATTCAAAAGA
TATGGTCATTGTGCTTAAGAGCCTGGATATTGTTTCGTGCATGGTCACAC
ACTCTGGAGATTTCCTACGTAAGCGTTTGACCACGGAGTTCCTTTCAAGG
GCAATGCAATTCTTAGAAGAACACAACCaaagtttttccaaaaacaAATC
TAGGTTCACGCAAATTCATAAAGCCTTGATCAAGATGATAAGTTTTCTTG
CTGACACTGCAGTTTCCTTAGATGTTGgattaaaagatttttgtaaCGTT
GTCCAAATATGTGCCAAATATTTGAACTGTCATCTACACGAAGCTGTTCA
AAAGAGTGCAGTTGAAGCAATTAGGAAATTACACACGTACAAACCGGAAG
CTACATGGCTATTATTAAACTCATTTGCAACACAACCAGAGATGATTGAA
CCACCGAAGCTGATATTCCCAAAGATTAAATTCTCAGAAGATGCAATGAA
AAGGAATGTTTATTCAGACAATGTCAGCAGAATTCTTATGGGTAAAGGTG
ATTAACTTTTGTA
Run BLAST on NCBI

protein sequence of TCONS_00008635-protein

>TCONS_00008635-protein ID=TCONS_00008635-protein|Name=TCONS_00008635-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
QKNFEPTDVRNDDTSAVDFFTQYTKVLQQAHGNIEDIDEEAINGNDDVDD
DGGEGKEKQEEEKEQQIPLHFDILIKALERCTYFNSAHHREIQLKSLDVT
QHCVIALRQRENDLLPALHKIWPSVVTKLHSKDMVIVLKSLDIVSCMVTH
SGDFLRKRLTTEFLSRAMQFLEEHNQSFSKNKSRFTQIHKALIKMISFLA
DTAVSLDVGLKDFCNVVQICAKYLNCHLHEAVQKSAVEAIRKLHTYKPEA
TWLLLNSFATQPEMIEPPKLIFPKIKFSEDAMKRNVYSDNVSRILMGKGD
Run BLAST on NCBI

transcript from alignment at sc0000086:670353..673916-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008635 ID=TCONS_00008635|Name=TCONS_00008635|organism=Clytia hemisphaerica|type=transcript|length=3564bp|location=Sequence derived from alignment at sc0000086:670353..673916- (Clytia hemisphaerica)
AGCAGAAGAACTTCGAACCAACGGACGTGCGCAATGACGACACCAGTGCA
GTAGATTTCTTCACACAATACACAAAAGTTTTACAACAAGCTCACGGGAA
TATTGAAGATATTGACGAAGAAGCAATCAATGGAAATGATGATGTTGATG
ATGATGGTGGTGAAGGTAAAGAAAAACAGGAAGAAGAAAAAGAACAACAG
ATTCCTCTTCATTTTGATATTCTGATCAAGGTTTGTATTATTCTAACGTC
CCGGATTAGTCGGTCGGTCGGTCCAAAATATTACAAACAGGGAGACTTAA
TTGCCAGAGGGAGGGTTGGAATTTGTACCCCTAAAAACCACAGAATAAGA
TGATTATGGAATAAATCCAGGTTATTAAGAGCAATTCAGCTTTTGATAGT
TTAAGATTTTCAAAAAATAAATCGAAAATTAATAACCGGGGTCGACGTTT
ATTCGGGAACTTACTATACCTCAGAATTTTAAACCATACCAGCGTAGTTA
CCAGACTGGTTGTGGCTTCCACGTGATACAAAGACGCATTATGTGATTTC
ATATGATGTAACCTCTAAATGTTCTTTAATTAAAACTGTTCTGAAATAAT
TTGTAAATATGATTTCCATTCTACAGGCTTTGGAGAGATGCACCTATTTC
AACTCAGCCCATCACCGTGAGATACAATTGAAATCGCTAGACGTCACTCA
ACACTGCGTCATCGCGTTAAGACAGCGTGAAAATGATTTGCTGCCGGCTC
TCCACAAAATCTGGCCAAGCGTCGTTACAAAGCTTCATTCAAAAGATATG
GTGAGTGACGTCAATCTCTGGGAAAAAAAGCTTTGACGAAGAAAACACCA
TCTTGATTTACGTGACACAGAAACAGGGTAGACCTCTCAGAGTCACTGAG
GGAGTGTCTATGATCTGTTCATAGCCCCCCTTTCGTGGAAACAATAGCTC
GGTTGTCTAAATGCTGTATGTGTATGTCTATAATTGTGTACAGTTGACTC
TCTCTAATTCGATCTTCAAGGGACCAAAAATTTTCTTCGAATTATAGAAA
GAATCTAATCATAAAGAGTAATTTAAACCACCTCCAAGCTGAGGGGACCA
ATATTGTTGTTCGAATTACAGAATAATAGAGGTTCGAATTAGAGAGAGTT
GTTTGTCTAAAAATAATCTTTATGACGCGGTCTTTGAGCTAAACTTTATT
CTGTTCTTCTCAGGTCATTGTGCTTAAGAGCCTGGATATTGTTTCGTGCA
TGGTCACACACTCTGGAGATTTCCTACGTAAGCGTTTGACCACGGAGTTC
CTTTCAAGGGCAATGCAATTCTTAGAAGAACACAACCAAAGTTTTTCCAA
AAACAAATCTAGGTTCACGCAAATTCATAAAGCCTTGATCAAGATGATAA
GTTTTCTTGCTGACACTGCAGTTTCCTTAGATGTTGGATTAAAAGATTTT
TGTAACGTTGTCCAAATATGTGCCAAATATTTGAACTGTCATCTACACGA
AGCTGTTCAAAAGGTATCATTAGCTTTTTATATCCTTTTGGGTCTCTCAA
AAGCTAAGAAAACCATGAACATTAAAAAAAGTATGGGTTGTAGGTTTATG
TTAAGGCTCAATTTATGTTTTTTACTCCGGGGGGAGTGTTAAATTTTCAC
CCTATTAGACCTCTCCTGTGAAAACCAAAAAAGTCACCCGAAGGGTAGAA
AGTTTTTATGAGGCTAACTTTTTCGTCAAAGTCTCCAATGGTGTCAGTGT
TTGAGTTTCGTTCTGAAGATTGCCGTCATTCTCCTACCTGTCTCATATCA
TAGATTGTTTGACCTACCTGGAGGTCCTATAAATTAACCTGTGTGCGTCC
GTCCGTCCGTCTGTTACCAACTTTTCTCGGGATTGAATAATAGGAATCTT
TTGATTTTTGGTACAAAGGTGCAAAATGGTGGTGGGCAAAATGTGACGGA
GCCCGATTTTCTAAAAAAAAAATTTTTGGGCAAATTTGGGCCAAAAAACG
GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNATTGGATCATTAAATTTTTCTGATTTTTTGCATGAAAGTAGGGT
ACCATCATAGGTAAAAGATGGCTGAAGCAGATTTTTGCAAAAAAATTTTG
TTGGCTCAAAATACGCATGTTTATCTATAAGAATCACTTGTAATAAGCAT
ACATCAATGTTCTTAGTCAAATTACTCAATTTTTATATGAGAAAGATGTT
TTTTTTGCTCATGAGGCCTTACTGTTGAAGAGTATGTGTGTTTAGACAGG
AAATTTGGGTTGCTTGGCGTGTTTTTATAAAAAAAATGGCCAAATTCGAT
ATTTTTTTATAAGCACATTATCAATTCCTTAGGTATTAGCTTTTCTCGAG
ATTGGCTCTTTCATTCTTTATGATTTATTGCACAAACATGCATAACTATA
AACCCTCGAATGTAACGGAGCCCGATTTCCGAAAGAAAATGTTTTGGGGC
AAATTTGGGCCAAAAAACGGCTGAAAAAAGGGTTCATTAATTAATTGGAT
CATTAATTTTTTCTGATTCTTTGCATGAAAGTAGGTAAAAGATGGCTGAA
GCAGATTTTTGTAAAAGAAGAATTTTTCAGCTCAAAAAAACGCATCTTTA
TCTATAAGAATCACTATTAATAAGCATACATCAATGTTCTTAGCCAAATT
ACTCAATTTTTTGATGAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAACAAACGAC
TAATTTTAATAGATCGTCACTATTAGTGTTCTGAATGATTGTTTATTGGT
CACGTCACGTAGATATCAATTATAAATGTGTTAAATGCATAACCAGGTAG
GTCCATAAAAGTATCACTTGTTTTTTCTTTAAAATGCTGTATTTTTCTCT
ACACTTTACTAGACTAGCAAAGGATCTCAAATCAAAAGCGAATTAGAAAT
AAATTTTCTTATCAAAAGTAAATTTAGTAAGATCTAACGTGGACATAGGA
AACATAGTTAGCGTCCGTATTTGAGACTTAGACGGTTGGGTTTACGAAGT
TTTCACGGGGAAGTTAAAGACGCCCATTTCGAAAAAAATGGTGATAGTGG
TCTGGGAAAATTAACTGAAACTTTTTTCTGATAATTAAAATTCATATAAT
TTCAGAGTGCAGTTGAAGCAATTAGGAAATTACACACGTACAAACCGGAA
GCTACATGGCTATTATTAAACTCATTTGCAACACAACCAGAGATGATTGA
ACCACCGAAGCTGATATTCCCAAAGATTAAATTCTCAGAAGATGCAATGA
AAAGGAATGTTTATTCAGACAATGTCAGCAGAATTCTTATGGGTAAAGGT
GATTAACTTTTGTA

Coding sequence (CDS) from alignment at sc0000086:670353..673916-

>TCONS_00008635 ID=TCONS_00008635|Name=TCONS_00008635|organism=Clytia hemisphaerica|type=CDS|length=903bp|location=Sequence derived from alignment at sc0000086:670353..673916- (Clytia hemisphaerica)
CAGAAGAACTTCGAACCAACGGACGTGCGCAATGACGACACCAGTGCAGT
AGATTTCTTCACACAATACACAAAAGTTTTACAACAAGCTCACGGGAATA
TTGAAGATATTGACGAAGAAGCAATCAATGGAAATGATGATGTTGATGAT
GATGGTGGTGAAGGTAAAGAAAAACAGGAAGAAGAAAAAGAACAACAGAT
TCCTCTTCATTTTGATATTCTGATCAAGGCTTTGGAGAGATGCACCTATT
TCAACTCAGCCCATCACCGTGAGATACAATTGAAATCGCTAGACGTCACT
CAACACTGCGTCATCGCGTTAAGACAGCGTGAAAATGATTTGCTGCCGGC
TCTCCACAAAATCTGGCCAAGCGTCGTTACAAAGCTTCATTCAAAAGATA
TGGTCATTGTGCTTAAGAGCCTGGATATTGTTTCGTGCATGGTCACACAC
TCTGGAGATTTCCTACGTAAGCGTTTGACCACGGAGTTCCTTTCAAGGGC
AATGCAATTCTTAGAAGAACACAACCAAAGTTTTTCCAAAAACAAATCTA
GGTTCACGCAAATTCATAAAGCCTTGATCAAGATGATAAGTTTTCTTGCT
GACACTGCAGTTTCCTTAGATGTTGGATTAAAAGATTTTTGTAACGTTGT
CCAAATATGTGCCAAATATTTGAACTGTCATCTACACGAAGCTGTTCAAA
AGAGTGCAGTTGAAGCAATTAGGAAATTACACACGTACAAACCGGAAGCT
ACATGGCTATTATTAAACTCATTTGCAACACAACCAGAGATGATTGAACC
ACCGAAGCTGATATTCCCAAAGATTAAATTCTCAGAAGATGCAATGAAAA
GGAATGTTTATTCAGACAATGTCAGCAGAATTCTTATGGGTAAAGGTGAT
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004835XLOC_004835Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008635-exon-sc0000086-1575043694:673687..673916TCONS_00008635-exon-sc0000086-1575043694:673687..673916Clytia hemisphaericaexon
TCONS_00008635-exon-sc0000086-1575043694:673117..673290TCONS_00008635-exon-sc0000086-1575043694:673117..673290Clytia hemisphaericaexon
TCONS_00008635-exon-sc0000086-1575043694:672404..672703TCONS_00008635-exon-sc0000086-1575043694:672404..672703Clytia hemisphaericaexon
TCONS_00008635-exon-sc0000086-1575043694:670353..670561TCONS_00008635-exon-sc0000086-1575043694:670353..670561Clytia hemisphaericaexon
TCONS_00008635-exon-sc0000086-1510915933:673687..673916TCONS_00008635-exon-sc0000086-1510915933:673687..673916Clytia hemisphaericaexon
TCONS_00008635-exon-sc0000086-1510915933:673117..673290TCONS_00008635-exon-sc0000086-1510915933:673117..673290Clytia hemisphaericaexon
TCONS_00008635-exon-sc0000086-1510915933:672404..672703TCONS_00008635-exon-sc0000086-1510915933:672404..672703Clytia hemisphaericaexon
TCONS_00008635-exon-sc0000086-1510915933:670353..670561TCONS_00008635-exon-sc0000086-1510915933:670353..670561Clytia hemisphaericaexon
TCONS_00008635-exon-sc0000086-1491911889:673687..673916TCONS_00008635-exon-sc0000086-1491911889:673687..673916Clytia hemisphaericaexon
TCONS_00008635-exon-sc0000086-1491911889:673117..673290TCONS_00008635-exon-sc0000086-1491911889:673117..673290Clytia hemisphaericaexon
TCONS_00008635-exon-sc0000086-1491911889:672404..672703TCONS_00008635-exon-sc0000086-1491911889:672404..672703Clytia hemisphaericaexon
TCONS_00008635-exon-sc0000086-1491911889:670353..670561TCONS_00008635-exon-sc0000086-1491911889:670353..670561Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008635-proteinTCONS_00008635-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:670353..673916 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.36549	7.76453	11.1836	13.9559	3.53391	4.13511	3.69304	5.45901	3.26992	2.63008	1.83803	1.611	2.01095	3.37623	4.60712	5.31266	5.52332	5.62245	2.30353	2.35442	3.50815	3.4223	10.8629	11.2943	4.86957	6.61554	0.898312	1.32743	7.43922	9.51698
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
Blast
[Close]
BLAST of TCONS_00008635 vs. Swiss-Prot (Human)
Match: TTI1 (TELO2-interacting protein 1 homolog OS=Homo sapiens GN=TTI1 PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 3.974e-25
Identity = 79/298 (26.51%), Postives = 129/298 (43.29%), Query Frame = 3 
Query:    9 NFEPTDVRNDDTSAVD---FFTQYTKVLQQAHGNIEDIDEEAINGNDDVXXXXXXXXXXXXXXXXXXIPLHFDILIKALERCTYFNSAHHREIQLKSLDVTQHCVIALRQRENDLLPALHKIWPSVVTKLHSKDMVIVLKSLDIVSCMVTHSGDFLRKRLTTEFLSRAMQFLEEHNQSFSKNKSRF--TQIHKALIKMISFLADTAVSLDVGLKDFCNVVQICAKYLNCHLHEAVQKSAVEAIRKLHTYKPEATWLLLNSFATQPEMIEPPKLIFPKIKFSEDAMKRNVYSDNVSRIL 887
            N  P  +    T+A D   F   Y K    A GN+ D D E     ++        +     + E  +PL   I +  +ERC +  S  + +I+LK LDV   CV+ L+  +N LLP  H+ WPS+V +L     + VL++  ++  + +  GDFLR R   + L +    L       ++    +  T   K  + ++  L      LD+G  D   V   C  YL+      +Q++A      L    P++TW LLN     P    PP      ++    + ++N Y+ NV ++L
Sbjct:  793 NQRPAALEKSTTTAEDIEQFLLNYLKEKDVADGNVSDFDNE----EEEQSVPPKVDENDTRPDVEPPLPLQIQIAMDVMERCIHLLSDKNLQIRLKVLDVLDLCVVVLQSHKNQLLPLAHQAWPSLVHRLTRDAPLAVLRAFKVLRTLGSKCGDFLRSRFCKDVLPKLAGSLVTQAPISARAGPVYSHTLAFKLQLAVLQGLGPLCERLDLGEGDLNKVADACLIYLSVKQPVKLQEAARSVFLHLMKVDPDSTWFLLNELYC-PVQFTPPHPSLHPVQLHGASGQQNPYTTNVLQLL 1085
The following BLAST results are available for this feature:
BLAST of TCONS_00008635 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTI13.974e-2526.51TELO2-interacting protein 1 homolog OS=Homo sapien... [more]
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