TCONS_00008743 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008743
Unique NameTCONS_00008743
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1466

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008743 ID=TCONS_00008743|Name=TCONS_00008743|organism=Clytia hemisphaerica|type=transcript|length=1466bp
CCATCGATGTTATCTCAATCGAACCATCTCTATTCCCGTAGGACGTAATC
TTCACGTCTCCCGTGAGGTTTAATTAAATCTTAACTGTctaatatctttt
tattcagttttgtctttaaaaattGGTACATGTGCATTAGTTGGTACAGC
ATTCAGTTGTAGTTAAGACGTTACAAGCTTGGAGAAGTACAAACTGAAAT
CATGTTAAGAACAGCCATTTTCTTGATCTGTGCTGTGAACGTTGTGGTTG
ATGCAACAACATGCCCaACCCTTGGCAACGCCATCACACAAAAAGACATT
TTGCATGCAGTCCGAGCATCCCAAGAAGTTTACAATGACAATGTGGTCGA
AGGATCAACTATCAACCAAACTCCTTTCACAGTTGTCaagaaaattcatg
aaaatttacACACTGATGCTGGAATAAGAGTTTTAGTGGCTGACCATGGG
AACACCAGAATGATCATCTATAGAGGAACTGACGGTGGAGCGCAACTTCT
CATCGAAGGTGGAAGCGTGTTTCAAAGGAAAACCGTTGTTCGGTACGGAA
ATCAAGACGTTAAAATCCTGAAATTCTTCTGGGAAGCTTTTGAGCTTGTT
TCGTACGGTTTAAGACCTTATATCACGGATCCATCAAAGAAATATATTAT
TACTGGTCATTCTCTTGGTGGTGCTATGGCTTCGATTATGGCTCTCAATG
GAACACAATTGTATCAAGGATCGATGTGGGCGAATCCTCAATCAAGTTTG
ATTACTTTTGGTCAACCAAGAACAGGCGAACAAACATATGCCAACCTACA
TGATTCTTTGATCTCCACATATCGCAAATTACGTTTTGTTTACATGGGTG
ATATTGTTGCTCGAAATCCAGGACATGAATTCGGATGGCGTCATCATTCA
AGAGCCGTTTACATGGGCGAAGAGAAAACTGGTGGTTGGTTCGGTGGTTG
GTTTGGCGACGAAATGGAAGACCAAGATATGAACGCAATTGATGAAGAGT
TAGAAGATTTCCTTGACTCAGATGAGGATGAAATTCAAGATGAATTCGAG
ACTACAGAGGACGAAAACGAGGCTGAATTCAAAGCACTAGAAGCATTAAC
ATTGAAAAGTGTTGAGGATGAAGAAGTTCAAGATTCCAACATGAGAAAAT
TCTGGACAATCTGTTCAACGCAGAGGGCTTACAAATGCATCACTTACTTA
AAGCATTTTATACCCAGTATCAACCATCATGCTATtgctaattatgtcaa
aagtgCCGAAGAAACACATGTGTTTAGAACGATGAAAGGAACAGAGAAAA
GTAACTTTAATAGAGCTCTCATCGCTGCTTGCCAAGAATTGGAAGGGTAG
ATTTTGTCTCGTTTGTAAAATCGTACAATATTCGATAAATGAAGTTTTCG
TAGCACTATGAATATTATTTTGCACACAATTAAAGATAATATGACATGAA
TTCAATAAAATACTTC
Run BLAST on NCBI

transcript from alignment at sc0000087:535870..540692+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008743 ID=TCONS_00008743|Name=TCONS_00008743|organism=Clytia hemisphaerica|type=transcript|length=4823bp|location=Sequence derived from alignment at sc0000087:535870..540692+ (Clytia hemisphaerica)
CCATCGATGTTATCTCAATCGAACCATCTCTATTCCCGTAGGACGTAATC
TTCACGTCTCCCGTGAGGTTTAATTAAATCTTAACTGTctaatatctttt
tattcagttttgtctttaaaaattGGTACATGTGCATTAGTTGGTACAGC
ATTCAGTTGTAGTTAAGACGTTACAAGCTTGGAGAAGTACAAACTGAAAT
CATGTTAAGAACAGCCATTTTCTTGATCTGTGCTGTGAACGTTGTGGTTG
ATGCAACAACATGCCCGTAAGTCACTCATTTCGTTGGAAGAATCTTGTAT
TGAAATATCCTTTTTATTATACTTTCCGAGTTCGAGTGTACAAAGACGTT
TTTCTTTTAAccctttcttttgatacatttttcaCCGGAACGTTTCATAC
TTAAAAAGCCCAATACTTTGCCTCCCAACAAAGTCCATCGGGATGAGGTC
AATAGACAGCCTAATTCTCGATTTTCTAAAAGCTTGGTTCTTTTCGTTAT
GAAAAGATGACAATTTCAACAGTTAAAAGATGGTATTGAATTTGGACAGT
TCTGGAAAAAGAATGTCCATATGATCACTTTATACAAATTTGTCTTATGT
AATGACACCCcgtatttcttttttctcagaACCCTTGGCAACGCCATCAC
ACAAAAAGACATTTTGCATGCAGTCCGAGCATCCCAAGAAGTTTACAATG
ACAATGTGGTCGAAGGATCAACTATCAACCAAACTCCTTTCACAGTTGTC
aagaaaattcatgaaaatttacACACTGATGCTGGAATAAGAGTTTTAGT
GGCTGACCATGGGAACACCAGAATGATCATCTATAGAGGAACTGACGGGT
AAGTATGACAAGTTCGTTTGCCACCTCTTCAAGATCTGTTTTTGGTAGAG
TTATTTCTATTGATTGACATCCAAATCACAATTTAGGTTCAAATTAAGAA
CCAAATTTGGTCCGATGTgccaaaaaaaaagacaaactcAACAATTTAAT
TGCGGAAATGATAATTACTTCTTTTGAGGTCTGCTGTCATTCTCAATGCA
TTTCTCCCGATGAATCTTGTCTTAGATATGAACGAAAGTAACAAAATCTT
GATTTATTTTagattctttcaaaatttttatcaaattctatTCCTATGCC
TACCGACGATGAATTTAAACCTCATTTTTACAGTGGAGCGCAACTTCTCA
TCGAAGGTGGAAGCGTGTTTCAAAGGAAAACCGTTGTTCGGTACGGAAAT
CAAGACGTTAAAATCCTGAAATTCTTCTGGGAAGCTTTTGAGCTTGTTTC
GTACGGTTTAAGACCTTATATCACGGATCCATCAAAGAAATATATTATTA
CTGGTCATTCTCTTGGTGGTGCTATGGCTTCGATTATGGCTCTCAATGGA
ACACAATTGTATCAAGTGAGTTTAATAAAAACGACATTGAAGTACTTTCC
AAATTTGTTCTCTGATATATTGTGGACTTGAAAAAGGAATTAGacaaaac
actttttggcaaatgatatatttttcagatcCTGGCCTTGATATTCAAGA
AGTAAATGTTTTATGAGGTTTAGATCTTgtctctactttccaactgcagc
ttaaggcgcttaaaaatcatttgtggtgttaaAAATTTCGCCGGGAAGTC
CCCTTTGTTTCAAATATattgtccatgattgtacttCAGGCTAAACTTTG
CATTCTGATGTAACCGAGTTTGGTGAATTTATATTAATCGCATCTTCCAT
TCTATATAGCCTAAGTAGCCTTCACACCTTTATGTCTTTACTTCTCAGGG
ATCGATGTGGGCGAATCCTCAATCAAGTTTGATTACTTTTGGTCAACCAA
GAACAGGCGAACAAACATATGCCAACCTACATGATTCTTTGATCTCCACA
TATCGCAAATTACGTTTTGTTTACATGGGTGATATTGTTGCTCGAAATCC
AGGACATGAATTCGGATGGCGTCATCATTCAAGGTAGGAATACCAAGACT
TGATGCAATGATTCTTTATCTTGTTTggcgtcaaatatttttcttttgtc
aacaacactaacacccctgtctcacagcctcagtggaacttttttcctca
gtggggataaaaattcNAACTCGATGCAATGATTCTTTATCTTGTTtggt
gtcaaatatttttcttttgtcaacaacacgaacacccctgtctcacagcc
ccagtggaacttttttcctcagtggggataaaattcctattgaaatccta
acggggatagaaattctattgctcaaaagttaaaaacccagtggggattg
ttttggagtgcaattttaaacatggaatttcgattggggatgaaatcaaa
gtcgattTTCCAGTGAGACTGAAATTTAAGGGTATTTTCCCagtggggac
gaaatttttacttagtttccagtgggtctgtgggTGTGTGACATAGGGGT
GTACACTATCACTGATTAAGCTATTGAATTGCATTTATCTCTGTCCAAAA
GAGCCGTTTACATGGGCGAAGAGAAAACTGGTGGTTGGTTCGGTGGTTGG
TTTGGCGACGAAATGGAAGACCAAGATATGAACGCAATTGATGAAGAGTT
AGAAGATTTCCTTGACTCAGATGAGGATGAAATTCAAGATGAATTCGAGA
CTACAGAGGACGAAAACGAGGCTGAANGAAACTGTGTTTAGTATTTTGGG
aattacacaatttttttttttataagaacaaactatataagaacataagg
cttcaaggcccaaaaatttaagaacattctaagaacatcctaaggctttg
gagacttaaaaacatgcattttcttaagaaattacatcgaaatgctcaaa
aaaagctgaaaataagaacattttaagaacattcttaggcttcaaatcca
aaaaactaagaatatccgaaggcttcgaaaatttttgacgttcttataaa
aaaaaaacgtgtagcaaagttctttaatgacttaaaaataacaaaggtaa
tataagttcatgcttatcttttcaataaaaacaattatactgtgatttga
cttcgtttcgaaataatcaatgataccaataataccaatgcacaaacact
taacattttccaacttttaattgcactgttcaaaaaagataacataacct
tcgtttttagtaataagttagagatttgatatttcacagaaaagtgctac
caaggggcgTATTTCGGATCCCAAtacttccgaaggacttttctgtttgc
cttgaaatttaacaaacttcttaacctaaggttgaaccaccactggtgta
aaaatgaacgttatagcatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttgt
ccatgattgtacttCAGGCTAAACTTTGCATTCTGGTGTAACCGAGTTTG
GTGAATTTATATTAATCGCATCTTCCATTCTATATAGCCTAAGTAGCCTT
CACACCTTTATGTCTTTACTTCTCAGGGATCGATGTGGGCGAATCCTCAA
TCAAGTTTGATTACTTTTGGTCAACCAAGAACAGGCGAACAAACATATGC
CAACCTACATGATTCTTTGATCTCCACATATCGCAAATTACGTTTTGTTT
ACATGGGTGATATTGTTGCTCGAAATCCAGGACATGAATTCGGATGGCGT
CATCATTCAAGGTAGGAATACCAAGACTTGATGCAATGATTCTTTATCTT
GTTTggcgtcaaatatttttcttttgtcaacaacactaacacccctgtct
cacagcctcagtggaacttttttcctcagtggggataaaaattcttattg
aaatcctaacggggatagaaattctattgttcaaaagttaaaaacccagt
ggggatagttttggagtgcaattttaaacatggaatttcgattggggatg
aaatcaaagtcgattttccagtggggctgaaatttaagggtattttccca
gcggggacgaaatttttacttagtttccagtgggtctgtgggTGTGTGAC
ATAGGGGTGTACACTATCACTGATTAAGCTATTGAATTACATTTATCTCT
GTCCAATAGAGCCGTTTACATGGGCGAAGAGAAAACTGGTGGTTGGTTCG
GTGGTTGGTTTGGCGACGAAATGGAAGACCAAGATATGAACGCAATTGAT
GAAGAGTTAGAAGATTTCCTTGACTCAGATGAGGATGAAATTCAAGATGA
ATTCGAGACTACAGAGGACGAAAACGAGGCTGAATTCAAAGCACTAGAAG
CATTAACATTGAAAAGTGTTGAGGATGAAGAAGTTCAAGATTCCAACATG
AGAAAATTCTGGACAATCTGTTCAACGCAGAGGGCTTACAAATGCATCAC
TTACTTAAAGCATTTTATACCCAGTATCAACCATCATGCTATtgctaatt
atgtcaaaagtgCCGAAGAAACACATGTGTTTAGAACGATGAAAGGAACA
GAGAAAAGTAACTTTAATAGAGCTCTCATCGCTGCTTGCCAAGAATTGGA
AGGGTAGATTTTGTCTCGTTTGTAAAATCGTACAATATTCGATAAATGAA
GTTTTCGTAGCACTATGAATATTATTTTGCACACAATTAAAGATAATATG
ACATGAATTCAATAAAATACTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004902XLOC_004902Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008743-exon-sc0000087-1491911889:535870..536135TCONS_00008743-exon-sc0000087-1491911889:535870..536135Clytia hemisphaericaexon
TCONS_00008743-exon-sc0000087-1510915933:535870..536135TCONS_00008743-exon-sc0000087-1510915933:535870..536135Clytia hemisphaericaexon
TCONS_00008743-exon-sc0000087-1575043694:535870..536135TCONS_00008743-exon-sc0000087-1575043694:535870..536135Clytia hemisphaericaexon
TCONS_00008743-exon-sc0000087-1491911889:536499..536717TCONS_00008743-exon-sc0000087-1491911889:536499..536717Clytia hemisphaericaexon
TCONS_00008743-exon-sc0000087-1510915933:536499..536717TCONS_00008743-exon-sc0000087-1510915933:536499..536717Clytia hemisphaericaexon
TCONS_00008743-exon-sc0000087-1575043694:536499..536717TCONS_00008743-exon-sc0000087-1575043694:536499..536717Clytia hemisphaericaexon
TCONS_00008743-exon-sc0000087-1491911889:537053..537284TCONS_00008743-exon-sc0000087-1491911889:537053..537284Clytia hemisphaericaexon
TCONS_00008743-exon-sc0000087-1510915933:537053..537284TCONS_00008743-exon-sc0000087-1510915933:537053..537284Clytia hemisphaericaexon
TCONS_00008743-exon-sc0000087-1575043694:537053..537284TCONS_00008743-exon-sc0000087-1575043694:537053..537284Clytia hemisphaericaexon
TCONS_00008743-exon-sc0000087-1491911889:537668..537852TCONS_00008743-exon-sc0000087-1491911889:537668..537852Clytia hemisphaericaexon
TCONS_00008743-exon-sc0000087-1510915933:537668..537852TCONS_00008743-exon-sc0000087-1510915933:537668..537852Clytia hemisphaericaexon
TCONS_00008743-exon-sc0000087-1575043694:537668..537852TCONS_00008743-exon-sc0000087-1575043694:537668..537852Clytia hemisphaericaexon
TCONS_00008743-exon-sc0000087-1491911889:538371..538380TCONS_00008743-exon-sc0000087-1491911889:538371..538380Clytia hemisphaericaexon
TCONS_00008743-exon-sc0000087-1510915933:538371..538380TCONS_00008743-exon-sc0000087-1510915933:538371..538380Clytia hemisphaericaexon
TCONS_00008743-exon-sc0000087-1575043694:538371..538380TCONS_00008743-exon-sc0000087-1575043694:538371..538380Clytia hemisphaericaexon
TCONS_00008743-exon-sc0000087-1491911889:540139..540692TCONS_00008743-exon-sc0000087-1491911889:540139..540692Clytia hemisphaericaexon
TCONS_00008743-exon-sc0000087-1510915933:540139..540692TCONS_00008743-exon-sc0000087-1510915933:540139..540692Clytia hemisphaericaexon
TCONS_00008743-exon-sc0000087-1575043694:540139..540692TCONS_00008743-exon-sc0000087-1575043694:540139..540692Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:535870..540692 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.7679	11.5321	16.3654	7.27774	3.54398	4.20075	3.37775	5.84239	0	4.11462	2.66251	0	0	0	0	0	0	0	0	0	1.27044	1.85903	6.02638	6.84857	0	1.25908	0	0	4.37528	4.45772
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008743 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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