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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008748 ID=TCONS_00008748|Name=TCONS_00008748|organism=Clytia hemisphaerica|type=transcript|length=650bp
cctacatagcccatgacCAATATACTCGTCAttgacattggcacttaaag
ggttaagtgatttcatttaataattaaatttcatttcttttaagatgttg
aaaacagaaaaaataataagataATATTTTAAGACAATGTCTGACGTCAG
CGAACATGATTCCGACAGCGACacagaaattcttaaaaaagaagaacaat
cTAATAAACAACAACTGAAGACCCATGTCATCTCAAGTGGACCACAAATT
ATAAATGCGCCTCAAGTATATACGCAACCCTCAGAGACACCAACATCGAC
AATAACAACAGAAAAAACTGAAAGTGCTGGCAGTGCTGCGGATGGCAATG
TGTTGGATGAATTGAAACATCAAGCTGAAAGTGCTGTTGCCGATCAAGAA
AAACCTGAATGGCAAAAATACTTGGATCAAAACCAACAAACAGGAGCGTA
CACTTACACGGATCCAAATGATGGGACTGTTTATGAATGGGATGAGACAA
AACGGGGATGGATCCCAAAGATCGACGAAGATTTCATAGCGATGTATCAA
GCGAATTATGGGTTCACTGCGACAGGTGAACATGATCCTAATGTCAATGC
AGAAACAGATGAAAAACCTGGAGCTGGAGACGAAAAGAATACAGATGATG Run BLAST on NCBI protein sequence of TCONS_00008748-protein >TCONS_00008748-protein ID=TCONS_00008748-protein|Name=TCONS_00008748-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MSDVSEHDSDSDTEILKKEEQSNKQQLKTHVISSGPQIINAPQVYTQPSE
TPTSTITTEKTESAGSAADGNVLDELKHQAESAVADQEKPEWQKYLDQNQ
QTGAYTYTDPNDGTVYEWDETKRGWIPKIDEDFIAMYQANYGFTATGEHD
PNVNAETDEKPGAGDEKNTDD Run BLAST on NCBI transcript from alignment at sc0000087:608080..615208+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008748 ID=TCONS_00008748|Name=TCONS_00008748|organism=Clytia hemisphaerica|type=transcript|length=7129bp|location=Sequence derived from alignment at sc0000087:608080..615208+ (Clytia hemisphaerica)
cctacatagcccatgacCAATATACTCGTCAttgacattggcacttaaag
ggttaagtgatttcatttaataattaaatttcatttcttttaagatgttg
aaaacagaaaaaataataagataATATTTTAAGACAATGTCTGACGTCAG
CGAACATGATTCCGACAGCGACacagaaattcttaaaaaagaagaacaat
cTAATAAACAACAACTGAAGACCCATGTCATCTCAAGTGGACCACAAATT
ATAAATGCGCCTCAAGGTATAAAATAATTATGCAAGTATCAAAAAAGTGT
caagtatttttcaaaattttgaaaattgaaaaatgagaaattttataaaa
attatataatggtttcgtttttcattttatgaTACTATTAATCATTATTT
TTAGATCTCTTCAGGTATTTCCTTTTGATGGTTATCTCACTATTCTATTT
CTTTGGGTTTTTGCCAAACAACAACTTGCAtatattgtttttaaatatag
taaatcaaaatgataaaaaatcacATTCTTCTTCACCGTTCAACATGGTC
TGATATACAGCGACTAAATATATTTTTACTGATTATCATACCTACCTGGA
CAGTGCCACACAATGTCAGCTCTtccaaattttatcattttagaaTGTGA
TTTAAAGCTTCTTTCATTATATCTTTACTTAGTATATACGCAACCCTCAG
AGACACCAACATCGACAATAACAACAGAAAAAACTGAAAGTGCTGGCAGT
GCTGCGGATGGCAATGTGTTGGATGAATTGAAACATCAAGCTGAAAGTGC
TGTTGCCGATCAAGAAAAACCTGAATGGCAAAAATACTTGGATCAAAACC
AACAAACAGGTATAATAacaaaattttattaatttgacATCCATCACCCA
CTTTCAGGACCCCATGCCATAAATTGGGATGTTGAGGGGCAACCAACCTT
TTTCTTTAAACTTTATTTTGAGAATTAGCACCACTTTTTGCCAATAAAAT
GAGcacataaaatttgtgaaattcACCCGTAATTCATCATCGCAAAAATT
GAGCTCCCTTGGGTATTTTCTATGTTAAAAGATAATGGTTGTTATTATTT
CCTATGGAAATAGGAGATGACTCCATGCTCTTctaaaaaattttagaaaa
aaaaagctCGAGACAGAGTACGGAGGTCAACCTTAATATAGTGATCAGGT
TTTATTGAGACGATGCACGTCATCTTTGAAATTGGAGAGTTTGCTTCTTT
GCTTTGTTGAGGTTTTTTTCATGGTTTCTCGTCGTAATATACAAGGAAAA
ACCACTCTTCCACACAGGATGGAATGAAAAGAATTGTAAAAGAAGGAAAA
GTAATGAAAAATGTTACTTTGTCAATTTGTTTACAAACTTATACGGCATG
AAATCTAAAAATAAGTAGGGCACAGTGTTGAAAAACTTACCCTAATAGAG
GTGTTTAGttaaaaagatttataaaaatcgtatgaaatcaagaaattgtt
taaaaaactGAGGACGGATGTGTCTGCCATTCGTCCGCCTGTAGACTTGC
TGACGATTTTGGGTGACAGCATTGGATTGTCTAATGTTGTGGTTCATCAA
CCTCTTCAATTTGTATTCGAGTTGCCGAATTCCAGCCGGTTTGAGCGTCT
ACATTCCCGTAACCATTGCAATTTCCAACATTGAGAGCCACGTTGATTAT
GTTGCTTTTCGAGATCTTGCAATGTCCAGTGATAACTTGTGGTCGATGTT
GATTCTTATATCTGTTACCGGTCCCTTCATGCATGTAAACTATACCGTCT
ATCGGCACAGGTGCACATTCATGTCCATCGAAAGTGACAAACCAACGTTT
GCAACATTGATTACAATTAGTGATTCTCATACCTGAGGATACGACGACTT
TCATATAAGTCGAGGTTGAATTCTTTTTGAATGAGCAGCTCTAGAAAATT
GATGGAAAAACCTTTGTTTTATTAATCAAAACTTTTAGTAACACCAGGTA
ACACGCGTGCGCGTTGCGTTAGTTGATtgctctttttggacctaccccgg
tggaggtcctataaattaacctttgtccgttcgtctgttcgttcgttatt
agctttcctcatgattggctcgttagttttttcaNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttgcaaaaaaaatttt
ttggctcaaaaaacgcatgtttatctataagaatcactattaataagcat
acatcaatattcttagtcaaattactcaattctttttatgagatggatgt
tttttttgctacgagggcttacttttgaagaatatgtgtgtttagacatt
aaattttggctgcttggcgtgtttttatagaaaaactggccaaattcgat
atttatttataagcacattatcaattacttaggtactTTTCTCGAGGTTG
GCGCTTTCattctttgagattttttgcacaaagatgcattaAACACTCAA
ATTTGTCGAAGCCCGATTTAAAAATTACTCAACTTTTTTTacgagataga
tgtttttttgcttgcttgaatatgaaagaatatttaaagaacatgaaatt
ttggtttctaaacgattttttataagaaacaaacgactacttttaataga
tcgtcactatttgggttttgaatgattgtttaatagtcacgctcacgtag
atatcaattatatatgtgttaaatgcataaccaggtaggtccataaaagt
atcacttgtcttTTATAGTTTTCCGCCAAAtttggatttgttttattaGA
TTATGTTCTTTAGCGATTTAATTTGAATTGTAACATTTTCCAGTCTCTGA
AGCTATCTTACGAGCTATTAAAGAAGCTTCTAATTACTTGTTACATCAGG
AGATATAACAGTTTAAATTGTTTTAAGGGTTGTGAGAAAAAGAACGAAAT
GATTTTCATATACCTACCTTCATCATGGCTTGTGTCAGGGTCAGTATTGC
CAAAAGAGTAATAACCAAAATAATTTGCCTCATTGTGAATTTAACACCTA
AGCTTTATATATGTTTTATAAAAGTCGCCTGTGTCCTGCCTACCGTTCCT
TTTAAAAGCTCGTAATGAAGTTTGGCTGGCAGAGGCAGCCTATTTAAAGA
TTCAAGGCAGTCTAGATTCAAGTGGTAGTGGGTCAGATtaagattgtttt
gtttttactttacgCCAACGAGTCATAACCAGTACGATAAACGAACTATT
TTAGGATGTTTGTCGTTTTTTCAAGAAGCTGGGTATCtggaatcaaaaca
aacacttAGAAACTTCTCTTTCGAGTAAAAAATAACACTACTTCTGGCTT
ATTGATAATACTGTAGTGCAATGAAAACTCGAATGTTTTTAGGATCAGTG
ACaaaaataaggatttttttaatgtttagtTTTAACGGTCTTTGCAAGCT
TCAAGACGCTTTTAGAAGGAAGCCTTTATATTGAAGAGGGCAAAAAAGAC
ATataccgtaaatcctcgaataagcgccccgctcgaataagcgccccccc
cTTTTAGTTAAAATGATATTATAAGCGCCCCGCTGGAATTAGCGCCccct
ttgaataagcgccctctccagggaggggcgcttatttgaatattgttatt
gattgaataaAATATTGAGTAGATACCtgtgtcttaaaaagaaagaaagc
gacTAAGAATAAAATGAGagaaattgtcaattggatttttccaatttttc
ttttattcatcctattttgaaaaatcaaccctttgaaacagttaagttta
agcagattccgaatttgttgatatacgaatttctgaaataaaaaaataag
cgcctcgcttgaataagtgccccgcttgaataagcgccccgcttgaataa
gcgcccccccccccttagagcctgaaaaattaaataagcgcccgggcgtA
TTTGAGGATTTACGGTAtccagattttttgcacagggCTTAGAAAAATCT
TGTGCAGGAAATGGTCCTTTCACATGTCCATTTTCATTTCCGggacattt
ttcaaatagtaATTCCTATgaactcaattttcgagaaaaaagaGTCACCA
GATCCGGAAAATAGTCccttagaatttcttttcttaGTTTTACTACCAGG
TACTACCACTCTCCAATTCTCTCAAAATTCACAGGTTTGAGTAAGTTTAG
TCATTACTCAAACctcaaaaaattgtaaaaaagtattGGAGTTGGCCGAA
TAAATAAAAGTGGTATATATGTTCAAAAAGGCACATCTTTCTTtatcata
aaaaaaaagaatatctaaaaaactttttcttcatttttcaccaGGAGCGT
ACACTTACACGGATCCAAATGATGGGACTGTTTATGAATGGGATGAGACA
AAACGGGGATGGATCCCAAAGGTACGTTGATTGATAGATTTCACATTAAA
taagtaaaaataaattttttggcgttatttacacTTTTAAAAGTTCTTTC
GTCTTAGACGGATTTCTGTTTCCGCGTATATAAAGAGGCTTTCCTGTCTC
TGCGTAATTCACCAAAGTTTCAAGATTGTGCactaatttgctgtgtaaaa
tctaTTTTCCGTCCCAGACGAAAAACTTTGCTTTGACGCTTTGACCACTG
TAAGAGCCTAATCAGTGAAGGTACAAAATTGATCAGTGACGGTTTAGTTT
AAAGAGACCGGCGTCTATTACTTATCACCGATAAGGTACGAGAAATCCCA
TTATTAAATTCATGAGGTTTTCAATCTTCTCCATATCTTCCTTTTAAAGA
TCGACGAAGATTTCATAGCGATGTATCAAGCGAATTATGGGTTCACTGCG
ACAGGTGAACATGATCCTAATGTCAATGCAGAAACAGATGAAAAACCTGG
AGCTGGAGACGAAAAGAATACAGATGATG Coding sequence (CDS) from alignment at sc0000087:608080..615208+ >TCONS_00008748 ID=TCONS_00008748|Name=TCONS_00008748|organism=Clytia hemisphaerica|type=CDS|length=513bp|location=Sequence derived from alignment at sc0000087:608080..615208+ (Clytia hemisphaerica)
ATGTCTGACGTCAGCGAACATGATTCCGACAGCGACacagaaattcttaa
aaaagaagaacaatcTAATAAACAACAACTGAAGACCCATGTCATCTCAA
GTGGACCACAAATTATAAATGCGCCTCAAGTATATACGCAACCCTCAGAG
ACACCAACATCGACAATAACAACAGAAAAAACTGAAAGTGCTGGCAGTGC
TGCGGATGGCAATGTGTTGGATGAATTGAAACATCAAGCTGAAAGTGCTG
TTGCCGATCAAGAAAAACCTGAATGGCAAAAATACTTGGATCAAAACCAA
CAAACAGGAGCGTACACTTACACGGATCCAAATGATGGGACTGTTTATGA
ATGGGATGAGACAAAACGGGGATGGATCCCAAAGATCGACGAAGATTTCA
TAGCGATGTATCAAGCGAATTATGGGTTCACTGCGACAGGTGAACATGAT
CCTAATGTCAATGCAGAAACAGATGAAAAACCTGGAGCTGGAGACGAAAA
GAATACAGATGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00008748-exon-sc0000087-1491911889:608080..608345 | TCONS_00008748-exon-sc0000087-1491911889:608080..608345 | Clytia hemisphaerica | exon |
| TCONS_00008748-exon-sc0000087-1510915933:608080..608345 | TCONS_00008748-exon-sc0000087-1510915933:608080..608345 | Clytia hemisphaerica | exon |
| TCONS_00008748-exon-sc0000087-1575043694:608080..608345 | TCONS_00008748-exon-sc0000087-1575043694:608080..608345 | Clytia hemisphaerica | exon |
| TCONS_00008748-exon-sc0000087-1491911889:608762..608938 | TCONS_00008748-exon-sc0000087-1491911889:608762..608938 | Clytia hemisphaerica | exon |
| TCONS_00008748-exon-sc0000087-1510915933:608762..608938 | TCONS_00008748-exon-sc0000087-1510915933:608762..608938 | Clytia hemisphaerica | exon |
| TCONS_00008748-exon-sc0000087-1575043694:608762..608938 | TCONS_00008748-exon-sc0000087-1575043694:608762..608938 | Clytia hemisphaerica | exon |
| TCONS_00008748-exon-sc0000087-1491911889:614624..614700 | TCONS_00008748-exon-sc0000087-1491911889:614624..614700 | Clytia hemisphaerica | exon |
| TCONS_00008748-exon-sc0000087-1510915933:614624..614700 | TCONS_00008748-exon-sc0000087-1510915933:614624..614700 | Clytia hemisphaerica | exon |
| TCONS_00008748-exon-sc0000087-1575043694:614624..614700 | TCONS_00008748-exon-sc0000087-1575043694:614624..614700 | Clytia hemisphaerica | exon |
| TCONS_00008748-exon-sc0000087-1491911889:615079..615208 | TCONS_00008748-exon-sc0000087-1491911889:615079..615208 | Clytia hemisphaerica | exon |
| TCONS_00008748-exon-sc0000087-1510915933:615079..615208 | TCONS_00008748-exon-sc0000087-1510915933:615079..615208 | Clytia hemisphaerica | exon |
| TCONS_00008748-exon-sc0000087-1575043694:615079..615208 | TCONS_00008748-exon-sc0000087-1575043694:615079..615208 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087 | supercontig | sc0000087:608080..615208 + |
Blast
The following BLAST results are available for this feature:
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