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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008753 ID=TCONS_00008753|Name=TCONS_00008753|organism=Clytia hemisphaerica|type=transcript|length=3719bpRun BLAST on NCBI protein sequence of TCONS_00008753-protein >TCONS_00008753-protein ID=TCONS_00008753-protein|Name=TCONS_00008753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp MLAITSVCHGVIFFFRKYRMSSPLSNLKNKKRTPLKQGSRTAPFKPKEFHRun BLAST on NCBI transcript from alignment at sc0000087:62503..80495- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008753 ID=TCONS_00008753|Name=TCONS_00008753|organism=Clytia hemisphaerica|type=transcript|length=17993bp|location=Sequence derived from alignment at sc0000087:62503..80495- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000087:62503..80495- >TCONS_00008753 ID=TCONS_00008753|Name=TCONS_00008753|organism=Clytia hemisphaerica|type=CDS|length=26214bp|location=Sequence derived from alignment at sc0000087:62503..80495- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008753 vs. Swiss-Prot (Human)
Match: UBX11 (UBX domain-containing protein 11 OS=Homo sapiens GN=UBXN11 PE=1 SV=2) HSP 1 Score: 225.328 bits (573), Expect = 8.329e-63 Identity = 153/498 (30.72%), Postives = 243/498 (48.80%), Query Frame = 1
Query: 391 MSSPLSNLKNKKRTPLKQ-----GSRTAPFKPKEFHEDDLLDQVYSTEGEKYKASHG-----VNRSSPVT-NGDLMKSMMSRLTAAEKGLTEAEQRNKEKDKKIRILEEKCEIYKKAQGYGSNQVLE-LERKCHKLQRQIHSMENFLEDYGMIWVG--TNDSSDEDCFXXXXXXXXXXXXXPLWNPDSSIIEQCHPQHQHKEFHMDYDLVLKNIGELNEIAGEGQHFIKHTKDGARLQVKESVPLILYANGIFMFGGPFRSFEEKTTQICMKDLMDGYFPSELQNTYPDGVPFTVTDKRDKTYRDKRMEKLFPGQGYLLSPEKSSPTTRNSEDSKENDGKSNEINRVAMEENQREGPKYSTENFLSKLPSSVLKNGKIIDILGDLRESLQENNQ-STKHNVVVIETDVVRNMKSRLTNGRRSRPQTPS-NITTLRIKSETGEETYVLKMLYTQKIEDVRRFLNETRNTSDDDYDLKTSFPNQTYDESNKTLRDYGLTP 1836
MSSPL++L ++ PL G R E D L D S E + +G V+R P + + +LM M +L E+ + KD+KI LE+ + + + Q E LE C +LQRQ+ ME FL DYG+ WVG + E ++ + + W P S+ +D+D +L ++ +L+E+ EG + GARL+ E +PL LY NGI MF GPF+ F + +TQ C++D++DG+FPSELQ YP+GVPF V+D R++ Y + ++ FPG+G ++ ++RV + G + + E FL++LP V++ G++IDI G +R++LQ + +V+ET + + R + P TP+ ++ LRIKSE GE+ ++L M I DVR L + R +++ ++FP Y + TL+ GL P
Sbjct: 1 MSSPLASLSKTRKVPLPSEPMNPGRRGIRIYGDEDEVDMLSDGCGSEEKISVPSCYGGIGAPVSRQVPASHDSELMAFMTRKLWDLEQQVKAQTDEILSKDQKIAALEDLVQTLRPHPAEATLQRQEELETMCVQLQRQVREMERFLSDYGLQWVGEPMDQEDSESKTVSEHGERDWMTAKKFWKPGDSLAPP----------EVDFDRLLASLQDLSELVVEGDTQVTPVPGGARLRTLEPIPLKLYRNGIMMFDGPFQPFYDPSTQRCLRDILDGFFPSELQRLYPNGVPFKVSDLRNQVYLEDGLDP-FPGEGRVVG----------------RQLMHKALDRV----EEHPGSRMTAEKFLNRLPKFVIRQGEVIDIRGPIRDTLQNCCPLPARIQEIVVETPTLAAERER----SQESPNTPAPPLSMLRIKSENGEQAFLLMMQPDNTIGDVRALLAQARVMDASAFEIFSTFPPTLYQDDTLTLQAAGLVP 463 The following BLAST results are available for this feature:
BLAST of TCONS_00008753 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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