TCONS_00008847 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008847
Unique NameTCONS_00008847
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008847 ID=TCONS_00008847|Name=TCONS_00008847|organism=Clytia hemisphaerica|type=transcript|length=811bp
GTAGATGGCAATTCAATTGTTTTTGTATACATGGGAATTAAAAAGATGGA
AAATGGATGATAACACGAGATGAACAAGGAATTGTAAAACGGTATACAGT
AATGCAATGCAGTAATAAAAAtcggaaaaaatttcaactatCGCAACAAT
CCTATAACAATCGTACCGGGATGAAATTGGAATCGATAACCTAAAGAATA
ACCAAGAAACCAATAATAAACAATAATCACAATGGCTTCAATAAAGACCA
CGATGAAGCAACAGATATCAAACTTAGTACACGGTCTTATATACAAGCCT
GGTATGAGCAGACTTCCATGGCCTTTTGTTGTTGTTGCCTTCTGTACAGA
GCTTGTCTTCGGCATGACAAGGGCCTCAGCGTACACCTACCTTCCAAAGC
TTATCAAGaCTTTTGGCGTATCAGAGACAAACACAGGAAAAACGATGGGC
TATATTGGATCGTCTCTTGTTGTTGGCAGTTTTATTGCAAGTTTTGGAGT
TGGTTACTTGGCGGATCGTTTGAATAAAAAGCATTTGCTGATGTCATCAC
TATTTCTTGCTGCAGTTGGTTCGCTTGCTTTTGGTGTCACTCAATCCATT
CCATTCGCAATTTTTGTTAGATTTTTCCAAGGAATACCAGGTCTTCTGGT
GGTGGCTCAATCTTTACTACTCGACCAATGTGACACTACAAACAGGTCGG
TTGCAATGGCTTTCGTTTTGGCAGCGTTTTCAGTTGGAATGGTTTTGGGT
CCTGCCATTGGAGgctttttggcTTTCCCGGATGATATTTTCAATGGAAT
ATTCAAAAGtc
Run BLAST on NCBI

protein sequence of TCONS_00008847-protein

>TCONS_00008847-protein ID=TCONS_00008847-protein|Name=TCONS_00008847-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MASIKTTMKQQISNLVHGLIYKPGMSRLPWPFVVVAFCTELVFGMTRASA
YTYLPKLIKTFGVSETNTGKTMGYIGSSLVVGSFIASFGVGYLADRLNKK
HLLMSSLFLAAVGSLAFGVTQSIPFAIFVRFFQGIPGLLVVAQSLLLDQC
DTTNRSVAMAFVLAAFSVGMVLGPAIGGFLAFPDDIFNGIFKS
Run BLAST on NCBI

transcript from alignment at sc0000088:332724..344251+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008847 ID=TCONS_00008847|Name=TCONS_00008847|organism=Clytia hemisphaerica|type=transcript|length=11528bp|location=Sequence derived from alignment at sc0000088:332724..344251+ (Clytia hemisphaerica)
GTAGATGGCAATTCAATTGTTTTTGTATACATGGGAATTAAAAAGATGGA
AAATGGATGATAACACGAGATGAACAAGGAATTGTAAAACGGTATACAGT
AATGCAATGCAGTAATAAAAGTAGGTACACTTTGTTCTTACATAAAcact
aaaggcttggggacacgagaagtttttttcgcgttggtgcaatgcaacac
gctccatcccaccaagctgaaacgctttctcgtgtctacaccccattttt
atttctaccaataaaagtgaaatatctcgcttgtcccagggacaaaatca
gcgtgtttttgggtatttccctcactttttgtcccataaacaaaaaaaga
aaccatgggacacgcactttttttcttgtgttggtgggatggagcatgta
agagcatgttgcattgcaccaacgcgaaagaAACTTCTCGTTTCCCTAAA
GGCTTGTGCATTTTTTTTGAGACTgcacaatttttattttcagagtTCAT
TCATATTTATTAGAACAGCTAGgctcaaaatcgtcaaaaataagaacaat
gttGAGCCTggaattgctgaatttcaagcatgaaaaagatgaaaatcaac
ttcttctaagaaataagaacataatgaGAACAATTTGTTTCTCAAAGtgc
caaagaaaaaaaaaacagctgaACCTCAACAAAATTTCACtggttcttat
agaaaaagtgTAATTAGAGTCTGCTTGGAGATTATGATTTTCGTACAAGA
AATTTATTTATTAGAAACAgcaaatatttgttttgaacAATGCAGGAGTT
CATCTAGGTTTCGAGATCATTGTTGTTTGCTCATTTCAGCATTATCAATG
ATAAAAAACTGTATGTACTTTTTCGTCTTTTCCATGTGactttttcagtt
aaataaTTTTGAGATAATTTCTTGATATGGGCAGAAAAGATTTGAGTAAA
TTCTTCCCGTTGGCAGTTTCTTCCCCatttggaagaatcttcccgatcgg
gTTAGTGGTGTAGACTGTCAGTGATGTGTACAtcttgaaaagtgaaaaat
agttttattttaCAAGCTCATTTTACTAATGGCACTTGGATGTATTTCTT
ATATGGACAcggtttttttaaagaataaattatatgcatttttttacata
agaaGATCCAAAATTTgtgaagccttaggatgttcttaaaattttctcgt
tttcgccattttgtaattatttttgtgcaatttcctattGGGTGTTTTAC
GTAGAGTCTGTGtgaccttaaccctattcaacctaggctttaaggggcgg
ttcagaactagggggggggggggttttcctGTACCNcgcgggaattaatt
tgaaaaatccctaggaaaatgaaagaaatttgtccaaaaaaaggcaaaac
TGCGAAAAAttaaacccgcgaaatgcaattttccgatttttttatttttc
gaccGTTGATTGAAAAAGTGTTCAGATTTGGGGAGAAGTGGAATGTGGCT
AATTGTGGAAGGTCTTTTTATTTGACCATTTCTAAATCTTTTTgaacaga
aaaaatatttcaggttGGCATATGTGCTTACTTTATGCTTAagaaatctg
caaatctgagccttcatatgctatAAGCGTtctgcttataaaaaagcata
tagcgaattaaaaataatgtttattttgcGGACAATTATGCTTTTTGTCC
AGTTTGGAattgtgatttttttccaaatttgacgaaaaaaaacttACAAG
TTAGTTTCCCTTTTTTGACACCTATTCAtcaatttgccaaatttaaaaca
agttttgagaccaatgaatttttttaattggaCGATAGGATACGATTGGA
TAGAGAAGTTGAAAATTGCTAGCGATTTATggtctttttatttatttatt
tatttattatttgtgATGTTGCCTAAGATACTATAAAAGCTACACCATAG
AGgcagtacacattttttattgaacatccaaagttttcgaagcctttgga
tgttcttaacttttcgagttttcacaatttcacaaaTCGGGTCTATTAAA
GTCCATAAAACCTTAAATTGTTCAAAACTTGTTcctaatattttgaatat
tttaatatttcgaagccttatgttcttatatagtttgttcttataaaaaa
cgtgtacctcaATTCTCTCAATTCCGaacaaccaaaatctttgatcgaag
ttttttgaaattgtcgGTGTGAATGCACTTTAGATCAACATTTTCCTTGA
ATAATTGTGATGATGTGCGACGCTTAGACGGTGTTTATCcggatttcaaa
aatgaaattaagAGAAGTCAAAGTACCTCGGTATGCGTCATTTTTCCTAt
tcatttctaaaaaatttgagtttttttttttttttcaaaaaaaaaatcat
agtgttctgaattatcttttcaacggaggtacacgtttttttttataaga
acaaactatataagaacataaggcttcgaggcccaaaaatttaagaacat
tctaagaacatactaaggctttggagacttNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcttaagaa
attacatcaaaatgctcaaaaaatgctgaaaataagaacattttaagaac
atttttaggcttcaattccaaaaaactaagaacatccgaagtcttcgaaa
atttttgacgttcttataaaaaaaacgtgtatctggTTTGTTGGATTTAA
AGCGTTGCTTAAATGATGGCAGGCAAAACAAATATTTGTGCACACGAATG
AACTTTAATCCTTTTtcaaatcagagtccttcgagccgaTTCTTTTGTAG
CCTGGAGATCGATGCTATGATtttttattctatatactgatggcgaaata
caTAGCATGGTATgtgctgagagtttgaatttcccagatcctaataatgg
ttgaaaacatagccaatcaaatttttttattcttttactggtcacacttt
tttagagaaagcgcaacttttgaaatttggtttttgttttattaatgagg
acagcgctaaatttcccactgtaatttttttgaggcagaTTTGTGCCCCA
CAGGTCATACaggtttttataagatacttcactaattggtcatttgaagt
aataaagatgacgcgttctttagaaaaggtaacaaaattgtttactacat
gttaacgaccaaccgaatcgaataagagcttgtaaaaactccagcttgtc
cccaaaaatacaggacggttcTCTTGTCtaattcttttggaaaaatcaat
taaattttttttttaattgcaatttcttaaaaaagaacCATGTCATTTTC
ATCGTTGCGGACCCTAGCGGtcccaaatcttttttttttcttcggaattc
aAGCATTCACAGCGATTGTTATTTTAATCGATTTTATATGCAAACCAGAA
TGAGCATGCACTGTAATTAAGTTTAAAGCGTTTTGATAACATATATTTCC
TTAGGGAAGAATTTGTTTCTAGAGAAAATTTATCTGATGATGTCTTGTGC
TTGGAGACACTtcgtaatttttgatttttgaagtgaAATCTATGGAATtg
aatttgtgatttttggtaTACGCATTATGTAACGACCCTTCTTCTTAGCT
ttataaacttttcaatataataTAATTTNGCGACCCTTTTTCTCAGCTtt
ataaacttttcaatataaaataatttttcctctAAGTTCAAATGCACTCT
TGAAATAAGTGTAAGGTAAACTaattctttacttttttgttttgtgtgTT
GTCATGATTGTATGTGCTTTTTAATTAAGTTGATGTTTGTCTTCATATTG
TGTTCTTGTTTAGCGATATCAAACTGCatcttttgtaagattttttttta
agtgcaAAAAATATTCTTCGTTTGCATTTGATTTCAAAACTCCTGGTCAC
GAGAAGTTATAGGAGGTAGGTTATTAGTCAttctttgttttatttctaTA
CGTTTTCGCCTTCTTTGAAGCAATTTGATGGTGTTGTTGTTTCAACGTAC
GAAAATAGATATATATGAAAATGATGATCCAGGAGCAGCCGGCggagatt
ttttttataaatatgtgttcttatcttatcttctaggagatcatgaactt
tcaattttgtaTTCAAATgatgttctgatttctaggaaaccttaatcgca
ctatttgtctccctaaacttatgactattttatggtttgatgtgttctaa
aatctaggaaaaacagtttgtcaagataaacttgtaagatatttgttttt
ctccacgaaaggtgtgttctgaaaatttctagggttactatAGGCAACaa
ggcaacaagattacatcaatATTCTCTTGATTATACTCCTGTatccttaa
aagatgtgttctgaaggtttctagggttacctagacaacaagaacacgtt
ggATGACCTtaattatacccctgtctcgtcagaacacatcattatttcta
actgattaattttcgaagatctgatcagaacagatcaaaatttctagctg
aaatatgctctcagaacacatcggaaaaaaggcTGCTTTCTATGATTGGG
TATCTAGAAATTGTTGAAATACAAAGTAGTAGCATTACTTTTGTTAAACT
GACTTTAGTTAGTGGTAGAAATTAAAAACTGGTATAAGATTAAAATGTTT
CTTGCTGAAAGATGGAATTATTTTGCCAGCAGTTGATTTTACGGTGAGAT
TTTAACTCGGCCGGTCGCTTTTTAAAAACACACTATCAagttttgttatt
ttctcttaATTGTATCTAtttataatatcaaaaatttgataattattttc
aatctttCATCGATCTATATAAAAAAGATAAGGTCAACATCTCTGATGAT
ATATTTTTTAGAtcggaaaaaatttcaactatCGCAACAATCCTATAACA
ATCGTACCGGGATGAAATTGGAATCGATAACCTAAAGAATAACCAAGAAA
CCAATAATAAACAATAATCACAATGGCTTCAATAAAGACCACGATGAAGC
AACAGATATCAAACTTAGTACACGGTCTTATATACAAGCCTGGTATGAGC
AGACTTCCATGGCCTTTTGTTGTTGTTGCCTTCTGTACAGAGGTAAGGAG
TTATTTTCTTCCCTTTTTCTCGCCGCTCTTCTCACTTATTTTAAATCAAT
CCTGTTGTATATGACATAGGGCACAAGCGTCTTTTGGACGTCCAATGTAC
GTTTGTAGGACGTCCAAAGGTCTTAAAGCTGTCCATTGAATGTCCATAAG
ACGTCGTGTGCCCACAGGGAGGACATAGGGCTATTTTGGAAACAATACCC
CTCTTTCCTTGAGCAGCTGGAAGCCCTTAGACACTTACCGGAATTTGAGA
GACCCTTGTATTTTCATCTAAATTTTTTAGACTTTCCTTTGATCTCTGAG
TACCTATTACtaagaaattagaaattttcatgaacttTCACATATCCCCT
TAGCTTTTCTTTGCGCTCTGCTTTTGGACAGGCTCCTGACACGGAGTAGA
AATTTATTTTAGAATAGCCAAAACATTTCACTGACCAAGCAAGTGTGTTT
AATCCATAGATCATTTTCCATAAGCTATAATTTAGCaaaatgtcaagaaa
tgaaCTCTAGTCATTAGATTCTTTATGTACTCTGGATCTGTATGActcta
ggctgctggcatccactaacggattcgtgctccttatagaggatgcttaa
taagcgatatttcctttgtccagagatttgccgcctttagccgatatacg
gctaaagacatttttagctggcgagtgtctacaaatataacattacgtaa
tgtttacattttctgtgaggcaccaaatcatagattggaaaatatatttg
gattttgaaaaaaaagtaggcggaaggaagtttgcttctttttcttcctc
ctttcttgtttaatgtggagattttgtaaaagaaaagattagaaattaaa
tttattgaatttaagtgccctgattgatgtatcttctgtgtgcaccaaca
aaattttgcttcataaaactacattttgatgcctgaatttggacttgtat
gagtgtatattttttttaccacactggattctttgatcactttggctcca
gataattgttttgtcagttctacagatatgttgcagattatttcaaggta
ttttagttatgtatatacagtacattttgggggttgtattgaatatttct
gacattacttctttatgattctacaaaagggagtcttggggagtgttgtt
gtttcttcagctttggcattccACTTTTcgatactgtgtggcctttgtgt
tTAACTTTTTCATGTACTTAGCTTCAATccttttgaagagattggagtgt
ttttgGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTACTCGCtaagattctgtaaaatacatcgaatt
aaaaaaaaccgaatcggaaagcggttggtagatcattaagcagacctata
ctaccagGGGTTTTGTAgaagtctgcgattcagactagtatGACTCGAGC
ACATGGATAACGCaatttttttcgagtaataGGAGTTCTAGTTATTGTGA
CTCAACAATTTTGACGTTTCAATGGAAGCCAAATTGTATTGTAATGTCTT
GCTTTCTACATAGTGCACTTTCCTCGCTCTCTATTTTCAGCTTGTCTTCG
GCATGACAAGGGCCTCAGCGTACACCTACCTTCCAAAGCTTATCAAGGTA
TTAATTTAgacttttatttcaaattacgTTAGACAATAAGGCTATATTGT
TCAAGAAAACGAGATTTTGATACACTTCTTCCAGTGTTTCGAAAGAAAAT
GGTCGGTGTTCATGATTCAAAATGACATGGTTCTATTTGAAGCGCAACGT
TTCGGAATATTACATgagtaaaagtaaaagaaacGCATAAACACGTCTCG
TATGAATAAACGTTCCAAccttttcatttattttagaCTTTTGGCGTATC
AGAGACAAACACAGGTACAATAGTTGATACAAACTGCAATCTTATCATAA
GGGTATCTgttatgaaaataaaagttatgtAGTTTTTCACTAGAcctgtt
gttttttcattttgtaataCCGAAAATCGTAATTTCGAAATGATACCGTT
ATGAATTTTTGATCAAGTGTTGTTAAAATGGTGctgacaaaaaagatttt
tgagatcgatatgaaattttattttttgattaagTTTACACCATCATTaa
gttcccagctggcacacaacgtcaaaaaacGTCCATtagacattcataac
gtccaaacaacgttgtgtgccagctgggttggtACGATTTTAACAGGCCT
TTCAATGGCACTCCAAGTATTTTGAGAACACATTATTTTTGGTTACTGTG
TTTTAGGAAAAACGATGGGCTATATTGGATCGTCTCTTGTTGTTGGCAGT
TTTATTGCAAGGTAAAAGCTTAAGATTAACTCTTCTATAAGACTGATGAT
TTTTCTGCCcacttttcaaagaaattgcttccttcaaaaataactttgaa
tAGATTATGATGGGCTTTGATGggctttttaatttatttagattttttaa
agggtagattttaaatttgttcATTAATTTAGTTCAGTATTCACTGCaga
cgatttaaaaaaaaaaatgaaaaggataTAAATCTTAAAGCTCACGATAA
TCTCGTCAAACTTGTCTAGATTTTTCTGACGCACTCAATATCACAATTAA
TAGTAAGTTCATAAGCCAACGTTTAAGCATATTTACATCTAAGAATGAAC
AGTATATAATTAAACATGAGCGAGAtaatgtatctggaattctctacggc
tacagTTAAAGCGGCGAGGGAAATGGAGAGTAAGGCAAGTTATTTCGGGT
GAAAGCAAGTCCGATATTTGATGTACGGCATTATGttgactttgcttata
cggtgttttggtgtttttcccgtacatagaaaacgacatgtcgcctttgg
tgacgacctGAACGGGCTGCCCCGCAACCGCAACCGTAGAATATCTTCGA
TACATAATCTCTCTATACTCTTAGCATGTACAACTTTTGGTTACCTATTA
AAAACACTATATAGGGAAAAGTTTACTTACGCTGACATGACTCCCGCTTA
GCAGCAAAACGAGTAAGCACTTCAATTGCAAAGAAACAACATTTCATTCA
AGCAAAAGCTTTTCCTTGCAGTTTTGGAGTTGGTTACTTGGCGGATCGTT
TGAATAAAAAGCATTTGCTGATGTCATCACTATTTCTTGCTGCAGTTGGT
TCGCTTGCTTTTGGTGTCACTCAATCCATTCCATTCGCAATTTTTGTTAG
ATTTTTCCAAGGAATACCAGGTACGTTGATTTCACCAGAAAGTTTGCTCc
gtgatttttttaatattaccgagtttatgtatgtgtgtttttcagcgacg
gagacggtaaggttctaatatGACTAGATCATAACCAACTGAGGACGAgt
gtaaatcagcacttttaccgtcctcgattttgcgggtcagaactgtgggt
ttttccaaatcgcttcaatCACTttgccgtcctcaaaagtgcaaatacat
aaacccGCTATTGCTCGTTTGGGAAAAACTATACTTGTgtattaattttg
aatttccttATTGGTAGGTCTTCTGGTGGTGGCTCAATCTTTACTACTCG
ACCAATGTGACACTACAAACAGGGTAAATATGTAATATTTGATCCATTTT
TGGCTTTGAGATATTCACATCTCGGGGGGGAGATTAAGCAAATTAGGCac
ggggatgtgccgctggtcagggtccttttcttaggctctgaagatatctg
acagggtctcaAATTTACTAATTATCAAATTGTATATCTGAAagggtcga
cttttggtaatttttgacaattttcagggtggaaattagaaaaatttcca
atttttcgtCTTTCGTCTAGATTTAGTCATTCTAGtcaattttcagggtg
aaaatgggaaaattatTTCTCTCTAACAGGGTCCAAAAATTACCAAATAT
TCATATTTGagagggtccatttttcaaactccagtagcacgtccccgtcg
gccgtcaaggtcagtgccccctcTGGGGCTCACATTTCATATAGAATAAG
AGCAACAAAGACACGCTTAAGAATTTCCATCAACATTTCCAAATGGATAC
AGATAGAGGAACTATTTCTTGATGGTTATCTGTCAACGTATCTCAAATAC
AGTACACTTTTGTATTTTAACCAAGTCGTCTTTAGCACTTGGCAATATGA
CTATATCTTCCTTTCCTAAGATTGAATGCGTAAATGCACAATTTAATAGT
ATTTTGATTCTTTCGACGTGGGTTTTACTTGTCTActtgtaaaagaaaaa
attgattgGAAATAGCCTTAAGAGACTCTGATGAAAAAATACAATACCAC
ATAGTAAGACAATATTTAGATCTAGTATCAAATTTGGTTCTTAACGTTAG
TTCGTTTGATTTTCAGTCGGTTGCAATGGCTTTCGTTTTGGCAGCGTTTT
CAGTTGGAATGGTTTTGGGTCCTGCCATTGGAGGTTcgtgtttttgactt
ttgcttaaAGAGGTAATATAATGTGAATGAATGTGGACCTTTCCAAAACA
AAAGCTGCTATACTTTATGTCGACGAGGTCTATTACCCACCCCTAATgaa
acagtagcgtagacaggaggggcgcaaaatttgtgtaggagagcagattt
ttatgacactgatTATCTATCTATAATACTAGGTCAGCGTGTTTCAAACA
CACTGTTGGCGATCGCTTATTTCCGACAAAATCATCGGAGAAAGAACCTT
CTGTAGTACGTTCActaagaaattaattttcactTTGTCCATTTATTTGT
TTAGTCGTAGAAGGCAAGGTTTATTACTTTACACCCTGCGATGCGGATCT
GTCTCTGATAAATTATGGCAAGATTAGAGCAGCTAGACGATATTATAAGT
CGAGTAAAATGGTCGAGTGAACCTTACCTCCTTAAAACCTAATACGATCG
TTTTTTTTGTTACTAAGGCCATGCAATTCCAATTCAGCAAACTTATTTCA
CTATCAAAATCgttgtagtaaaaaacaaaatgtttacgcatgcgttttaa
aacaGCTGTGAAATTATTGTCTCGCTTAACGAAGTAAATCAATNNGGTAC
ATAACACATGATCAAAGCAAAAGTAAAGCGTAGACCCTAGAGAAAAAAGT
TACTTTGAGGAAGGGGATGGGATATAgcctgaaaaaaatttaaaatctct
cCTATTCAGACAAAATGTAAGGAAACTAATGAGTTTATAAAGGTAAGCGA
GNCCAAACCTGGTCATTGCAGTCTGTTATATTGCATTGCTGATTGGGACG
TCTTTTATGTATTATCAGCCTTACTACAGGTATGtcaatttaaaagtttt
gtttttaaactgagattgatatcgtttgcttactcatcaattctaattca
caagctttttcacattggattgacacagatgtgaaGCAAgagtaaaagaa
aaataattttatacacTGTCTTGATACGAAATATGNGATAATTgttgtgt
cataaaaatctgctctcccacacaaattttgcgccccctaCTGGAATCTG
GATTTTTATAGGATATAAAAATTACCCCGTTTTTTTTACTCCTTTCTATT
TCAATCGCGCTTCTAATTTTATTCCTCAATTTGAAATTTACAAAGAATTT
AAGTTAGTTCGACGCTTTGCTGTCGGGATTTCTTGTACTGAGTTataaaa
agtcatattttttctgttttgtttatgtgGTTTCTTACATTATATACTTT
CCTGTCAAAactctttttttcatatttaaggctttttggcTTTCCCGGAT
GATATTTTCAATGGAATATTCAAAAGtc

Coding sequence (CDS) from alignment at sc0000088:332724..344251+

>TCONS_00008847 ID=TCONS_00008847|Name=TCONS_00008847|organism=Clytia hemisphaerica|type=CDS|length=579bp|location=Sequence derived from alignment at sc0000088:332724..344251+ (Clytia hemisphaerica)
ATGGCTTCAATAAAGACCACGATGAAGCAACAGATATCAAACTTAGTACA
CGGTCTTATATACAAGCCTGGTATGAGCAGACTTCCATGGCCTTTTGTTG
TTGTTGCCTTCTGTACAGAGCTTGTCTTCGGCATGACAAGGGCCTCAGCG
TACACCTACCTTCCAAAGCTTATCAAGaCTTTTGGCGTATCAGAGACAAA
CACAGGAAAAACGATGGGCTATATTGGATCGTCTCTTGTTGTTGGCAGTT
TTATTGCAAGTTTTGGAGTTGGTTACTTGGCGGATCGTTTGAATAAAAAG
CATTTGCTGATGTCATCACTATTTCTTGCTGCAGTTGGTTCGCTTGCTTT
TGGTGTCACTCAATCCATTCCATTCGCAATTTTTGTTAGATTTTTCCAAG
GAATACCAGGTCTTCTGGTGGTGGCTCAATCTTTACTACTCGACCAATGT
GACACTACAAACAGGTCGGTTGCAATGGCTTTCGTTTTGGCAGCGTTTTC
AGTTGGAATGGTTTTGGGTCCTGCCATTGGAGgctttttggcTTTCCCGG
ATGATATTTTCAATGGAATATTCAAAAGt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004966XLOC_004966Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008847-exon-sc0000088-1491911889:332724..332843TCONS_00008847-exon-sc0000088-1491911889:332724..332843Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1510915933:332724..332843TCONS_00008847-exon-sc0000088-1510915933:332724..332843Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1575043694:332724..332843TCONS_00008847-exon-sc0000088-1575043694:332724..332843Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1491911889:337735..337965TCONS_00008847-exon-sc0000088-1491911889:337735..337965Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1510915933:337735..337965TCONS_00008847-exon-sc0000088-1510915933:337735..337965Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1575043694:337735..337965TCONS_00008847-exon-sc0000088-1575043694:337735..337965Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1491911889:340014..340070TCONS_00008847-exon-sc0000088-1491911889:340014..340070Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1510915933:340014..340070TCONS_00008847-exon-sc0000088-1510915933:340014..340070Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1575043694:340014..340070TCONS_00008847-exon-sc0000088-1575043694:340014..340070Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1491911889:340310..340337TCONS_00008847-exon-sc0000088-1491911889:340310..340337Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1510915933:340310..340337TCONS_00008847-exon-sc0000088-1510915933:340310..340337Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1575043694:340310..340337TCONS_00008847-exon-sc0000088-1575043694:340310..340337Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1491911889:340730..340784TCONS_00008847-exon-sc0000088-1491911889:340730..340784Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1510915933:340730..340784TCONS_00008847-exon-sc0000088-1510915933:340730..340784Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1575043694:340730..340784TCONS_00008847-exon-sc0000088-1575043694:340730..340784Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1491911889:341545..341693TCONS_00008847-exon-sc0000088-1491911889:341545..341693Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1510915933:341545..341693TCONS_00008847-exon-sc0000088-1510915933:341545..341693Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1575043694:341545..341693TCONS_00008847-exon-sc0000088-1575043694:341545..341693Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1491911889:341991..342046TCONS_00008847-exon-sc0000088-1491911889:341991..342046Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1510915933:341991..342046TCONS_00008847-exon-sc0000088-1510915933:341991..342046Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1575043694:341991..342046TCONS_00008847-exon-sc0000088-1575043694:341991..342046Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1491911889:342840..342906TCONS_00008847-exon-sc0000088-1491911889:342840..342906Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1510915933:342840..342906TCONS_00008847-exon-sc0000088-1510915933:342840..342906Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1575043694:342840..342906TCONS_00008847-exon-sc0000088-1575043694:342840..342906Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1491911889:344204..344251TCONS_00008847-exon-sc0000088-1491911889:344204..344251Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1510915933:344204..344251TCONS_00008847-exon-sc0000088-1510915933:344204..344251Clytia hemisphaericaexon
TCONS_00008847-exon-sc0000088-1575043694:344204..344251TCONS_00008847-exon-sc0000088-1575043694:344204..344251Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008847-proteinTCONS_00008847-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:332724..344251 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09303	0.810737	2.47961	0.800755	0	0.439613	0	2.6359	0.912884	0	0.812613	0.430533	1.86992	3.20008	0.313451	0.648108	0.292843	1.68506	1.65444	3.72083	0.716795	2.58473	0.721924	0.325225	2.40441	1.25908	0.600581	0	0.697599	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008847 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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