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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008942 ID=TCONS_00008942|Name=TCONS_00008942|organism=Clytia hemisphaerica|type=transcript|length=1093bp
GTCAATgtgaaagattcgaataatgtaACATTTCAAAGCATTGAATTACA
GAATACAACAGTTTATGAATTTGCATTCTTCGTACGGAGAAGCATCTTCA
ACGCAATTGAAATCCGAGTTGTTGATTGTGTTATGAACAGCCGTCTTGTC
AATGTTCAAGATTCGAATAACGTAATAATTCAAAGTATTGAATTACAGAA
TACAACAGTTTATGGATTCTTGGCATTCTTAGTATGGAGAAGCATCTTCA
ACGCAAATGAAATCCGGATGGTTGACTGTGTTATAAAGGACTGTCTCATC
TTTGTTGAAGATTCAAGTAACGCAACaattcaaaacattgaaatacaGAA
AACAACAGTTTATGGATTGCCATTTTTCGTATCGAGAAGCATCTTCAACG
CAAATGAAATCCGAGTTGTTGACTGTGTTATGAAGGACCGCCTTGTCAGT
GTTCAAGATACGAATAACGTAATAATTCAAAGTATTGAATTACAGAATAC
AACAGTTTATGAATTTGCATTCTTCGTAGGGAGAAGCATCTTCAACGCAA
ATGAAATCCGAGTTGTTGACTGTGTTATGAAGACCCGTCTCGTCAATGTT
GTATATTCGAATAATGTAACAATTCAAAGTATTGAATTACAGAATACAAC
AGTTTATGGGTTGGCATTCTTCGTATCGAACAGCATCTTCAATGCAAACG
AAATGCGAATTGTTGACTGTGTTATGAAAAGCCATCTTGTCAATGTTCAA
GATTCGAATAATGTAATAATTCAAAGTATTGAATTACAGAATACAACAGT
TTATGAATTTGCATTCTTCGTATGGAGAAGCATCTTCAACGCAAATGATA
TCCGAGTGGTTGACTCTACATTAAAAGGATTGGTGGAATTAACACAAAAA
AGTAATATCACCATAAAAGATATATCCGTGAACAAGACCAATGTAAGAGA
AACATTTGCCCGTTTATGGAAATTCAGTAAATCCACAATTACAAATGTAA
CGATTTACGAAAGTAGGATTATACATGCAATGTTTAGCCttacagaaaaa
agtaatgttatacttaaaaatgcaACAATATCTGACACTGAAA Run BLAST on NCBI protein sequence of TCONS_00008942-protein >TCONS_00008942-protein ID=TCONS_00008942-protein|Name=TCONS_00008942-protein|organism=Clytia hemisphaerica|type=polypeptide|length=364bp
VNVKDSNNVTFQSIELQNTTVYEFAFFVRRSIFNAIEIRVVDCVMNSRLV
NVQDSNNVIIQSIELQNTTVYGFLAFLVWRSIFNANEIRMVDCVIKDCLI
FVEDSSNATIQNIEIQKTTVYGLPFFVSRSIFNANEIRVVDCVMKDRLVS
VQDTNNVIIQSIELQNTTVYEFAFFVGRSIFNANEIRVVDCVMKTRLVNV
VYSNNVTIQSIELQNTTVYGLAFFVSNSIFNANEMRIVDCVMKSHLVNVQ
DSNNVIIQSIELQNTTVYEFAFFVWRSIFNANDIRVVDSTLKGLVELTQK
SNITIKDISVNKTNVRETFARLWKFSKSTITNVTIYESRIIHAMFSLTEK
SNVILKNATISDTE Run BLAST on NCBI transcript from alignment at sc0000088:646295..647387 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008942 ID=TCONS_00008942|Name=TCONS_00008942|organism=Clytia hemisphaerica|type=transcript|length=1093bp|location=Sequence derived from alignment at sc0000088:646295..647387 (Clytia hemisphaerica)
TTTCAGTGTCAGATATTGTtgcatttttaagtataacattacttttttct
gtaaGGCTAAACATTGCATGTATAATCCTACTTTCGTAAATCGTTACATT
TGTAATTGTGGATTTACTGAATTTCCATAAACGGGCAAATGTTTCTCTTA
CATTGGTCTTGTTCACGGATATATCTTTTATGGTGATATTACTTTTTTGT
GTTAATTCCACCAATCCTTTTAATGTAGAGTCAACCACTCGGATATCATT
TGCGTTGAAGATGCTTCTCCATACGAAGAATGCAAATTCATAAACTGTTG
TATTCTGTAATTCAATACTTTGAATTATTACATTATTCGAATCTTGAACA
TTGACAAGATGGCTTTTCATAACACAGTCAACAATTCGCATTTCGTTTGC
ATTGAAGATGCTGTTCGATACGAAGAATGCCAACCCATAAACTGTTGTAT
TCTGTAATTCAATACTTTGAATTGTTACATTATTCGAATATACAACATTG
ACGAGACGGGTCTTCATAACACAGTCAACAACTCGGATTTCATTTGCGTT
GAAGATGCTTCTCCCTACGAAGAATGCAAATTCATAAACTGTTGTATTCT
GTAATTCAATACTTTGAATTATTACGTTATTCGTATCTTGAACACTGACA
AGGCGGTCCTTCATAACACAGTCAACAACTCGGATTTCATTTGCGTTGAA
GATGCTTCTCGATACGAAAAATGGCAATCCATAAACTGTTGTTTTCtgta
tttcaatgttttgaattGTTGCGTTACTTGAATCTTCAACAAAGATGAGA
CAGTCCTTTATAACACAGTCAACCATCCGGATTTCATTTGCGTTGAAGAT
GCTTCTCCATACTAAGAATGCCAAGAATCCATAAACTGTTGTATTCTGTA
ATTCAATACTTTGAATTATTACGTTATTCGAATCTTGAACATTGACAAGA
CGGCTGTTCATAACACAATCAACAACTCGGATTTCAATTGCGTTGAAGAT
GCTTCTCCGTACGAAGAATGCAAATTCATAAACTGTTGTATTCTGTAATT
CAATGCTTTGAAATGTtacattattcgaatctttcacATTGAC Coding sequence (CDS) from alignment at sc0000088:646295..647387 >TCONS_00008942 ID=TCONS_00008942|Name=TCONS_00008942|organism=Clytia hemisphaerica|type=CDS|length=1092bp|location=Sequence derived from alignment at sc0000088:646295..647387 (Clytia hemisphaerica)
TTCAGTGTCAGATATTGTtgcatttttaagtataacattacttttttctg
taaGGCTAAACATTGCATGTATAATCCTACTTTCGTAAATCGTTACATTT
GTAATTGTGGATTTACTGAATTTCCATAAACGGGCAAATGTTTCTCTTAC
ATTGGTCTTGTTCACGGATATATCTTTTATGGTGATATTACTTTTTTGTG
TTAATTCCACCAATCCTTTTAATGTAGAGTCAACCACTCGGATATCATTT
GCGTTGAAGATGCTTCTCCATACGAAGAATGCAAATTCATAAACTGTTGT
ATTCTGTAATTCAATACTTTGAATTATTACATTATTCGAATCTTGAACAT
TGACAAGATGGCTTTTCATAACACAGTCAACAATTCGCATTTCGTTTGCA
TTGAAGATGCTGTTCGATACGAAGAATGCCAACCCATAAACTGTTGTATT
CTGTAATTCAATACTTTGAATTGTTACATTATTCGAATATACAACATTGA
CGAGACGGGTCTTCATAACACAGTCAACAACTCGGATTTCATTTGCGTTG
AAGATGCTTCTCCCTACGAAGAATGCAAATTCATAAACTGTTGTATTCTG
TAATTCAATACTTTGAATTATTACGTTATTCGTATCTTGAACACTGACAA
GGCGGTCCTTCATAACACAGTCAACAACTCGGATTTCATTTGCGTTGAAG
ATGCTTCTCGATACGAAAAATGGCAATCCATAAACTGTTGTTTTCtgtat
ttcaatgttttgaattGTTGCGTTACTTGAATCTTCAACAAAGATGAGAC
AGTCCTTTATAACACAGTCAACCATCCGGATTTCATTTGCGTTGAAGATG
CTTCTCCATACTAAGAATGCCAAGAATCCATAAACTGTTGTATTCTGTAA
TTCAATACTTTGAATTATTACGTTATTCGAATCTTGAACATTGACAAGAC
GGCTGTTCATAACACAATCAACAACTCGGATTTCAATTGCGTTGAAGATG
CTTCTCCGTACGAAGAATGCAAATTCATAAACTGTTGTATTCTGTAATTC
AATGCTTTGAAATGTtacattattcgaatctttcacATTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008942-exon-sc0000088-1491911889:646295..647387 | TCONS_00008942-exon-sc0000088-1491911889:646295..647387 | Clytia hemisphaerica | exon |
| TCONS_00008942-exon-sc0000088-1510915933:646295..647387 | TCONS_00008942-exon-sc0000088-1510915933:646295..647387 | Clytia hemisphaerica | exon |
| TCONS_00008942-exon-sc0000088-1575043694:646295..647387 | TCONS_00008942-exon-sc0000088-1575043694:646295..647387 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000088 | supercontig | sc0000088:646295..647387 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012334 | Pectin_lyas_fold |
| IPR011050 | Pectin_lyase_fold/virulence |
Blast
The following BLAST results are available for this feature:
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