TCONS_00008948 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008948
Unique Name	TCONS_00008948
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2018

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000089:64494..68600+
coding sequence from alignment at sc0000089:64494..68600+

transcript sequence

>TCONS_00008948 ID=TCONS_00008948|Name=TCONS_00008948|organism=Clytia hemisphaerica|type=transcript|length=2018bp
TATTGTTAACATTATTCAAGTCGTTAATTcgtttaatttcaaaaaatcat
aagatAGGGGCTCACTCAAGATGAAACATTATATTTCAATGATCGTGTTG
CTTCTCTCTCTCCTTGGTGTCAACACCAAGTGTACTGGTGATGATTGCAG
TCCAAATTGGTTACCCTTTGATAATATGAATTCAGCGCTCAAAGGTTACG
ATATTATGACTGGTAATCCATTTAGCAATGGTAAGGATCCAGGCTTCAGA
CAACAAATCTTCGTACCAACTCTGAAGAATGCAGAACATCGATATGAACT
TCATTCAGCTTTCACATACGACAATGAAGTGTACTGTGACACGAAAATGA
CAACTGATATTTCTTCTACCTCAAAAGAATACAGGAAATTCATGCGTGAA
ACATCCAAATCTGGAGTCGATCTACAAGTTGGAACTGAAACTGAAGTTAC
AGCTGGCATTGACATTAAGGGGGCAAGCATATCGGCTACCAAAAAAATTC
CAGAACCTTTCACTAGAGCTTGGGGAAAATCAAACGATTTCCAATCAATG
CAGGGTTTGTTCagtgaaaagaaaagtttaGTAGCGACTTCATTTGCGAA
ATGCCAGCTTTACGAAGTTATTATCCATACGTTTTCTTCGATTCCACCTC
TTATGGAACCATTCAAGAAATCAATCAAAGAACTACACCAAGCAAGTGGT
GCTGATAAAAACACTCAACTTCGAATCTTCAAATCCTTCATTCGGCATTA
CGGAACCCATTTCTCAATCAAAACATCATTCGGTGGGGAAATCGTCCACA
GAACCGTCTTCTCAAGttcaacaaaaaagaaattcgatggcgaaaaaata
aaaaaatgtgagTATGTGAGAGGCAGTAAAATATTTGGAATCCAAGTCGA
GCAAGATAAAGAAGGATGTTCGTCAACCGATGAAAAACGCTTATACAATG
AGCAAGGATCGACCATTGTCAGCTCAATCATGTCAAAAGGTGCTCCACCC
GAGAAAGACATCTACACTTGGGCACAACAAGATTTCAAATCAGTTCCTTT
GAAATATCAATTATCACCCATCATTAATTTATTCAAGAAGAAGTATTTGG
ATGATGGATTGCAAGTATCAGCAGAAGGTATTCGTAAATGGTTTGTACCG
TTGTATTTCAATTTCTGTGTATCGATGTATGGTAGTGAATGTAGCGAAAG
AAACGGATGTGGATATGATGATCAATGTCCATCAGATACTGATTGTGTTG
GAGGCCCTACCGAATCGCATTATTGCCGAGCTTGGTCAAGTTGGTCATGT
CAGCATTGTTCAAAGACAGCCAAACGAACACGCACGTGTCATGGATGTTC
TGGCAAAACGACCGAAACTAAAGAAATGTGCCAAATTGAATCTTCATGCT
TCCCTGACAAAGttttaagctaCAACACTGGTTCATGGGGCAGTTGGCGT
TCATGGGAGTATTGCCCAAAAGGAACCTGGGTTGTCAAGCTACAAACAAA
TATTGAAAGCTACCAAGGAGGTGACGATGACACGGCATTAAATGCGATCT
CTTTAAGATGTAACAATGATGTTGGCACTACCATCAAAAGTGGATACACC
AATTGGGGAACTTGGCGAGCCGAGTCACAAAAATGTATTAATGGATTTTA
CGGTGGAATGCTAAAAGATGAAAGCTACCAGgggTCTGATGACGATACTT
CGACCAATGCCATTCGTTTGATATGTCGAGATAACAATCAGTGGTACAAA
AGCGGTGAAGGTGGTTGGGGTTCATGGACACAAAGCACTTACTGTCCTGC
TGGCTATAAAATTGTTGGTCTTCAAACACAGATCGAAAGTTACCAAGGGA
GTGACGACGATACTAGTTTAAATGGTGTTCGATTGTTGTGTCGATATTTT
GGATAAGGCAATGGTGATACGGATAGTTGATAAAGGGGGTGTTTGTGCAT
TTTAACTAATACTAATTATTACGAATTGtatacttttttgttttcttttg
ttaattatGAATTGCatg

Run BLAST on NCBI

protein sequence of TCONS_00008948-protein

>TCONS_00008948-protein ID=TCONS_00008948-protein|Name=TCONS_00008948-protein|organism=Clytia hemisphaerica|type=polypeptide|length=611bp
MKHYISMIVLLLSLLGVNTKCTGDDCSPNWLPFDNMNSALKGYDIMTGNP
FSNGKDPGFRQQIFVPTLKNAEHRYELHSAFTYDNEVYCDTKMTTDISST
SKEYRKFMRETSKSGVDLQVGTETEVTAGIDIKGASISATKKIPEPFTRA
WGKSNDFQSMQGLFSEKKSLVATSFAKCQLYEVIIHTFSSIPPLMEPFKK
SIKELHQASGADKNTQLRIFKSFIRHYGTHFSIKTSFGGEIVHRTVFSSS
TKKKFDGEKIKKCEYVRGSKIFGIQVEQDKEGCSSTDEKRLYNEQGSTIV
SSIMSKGAPPEKDIYTWAQQDFKSVPLKYQLSPIINLFKKKYLDDGLQVS
AEGIRKWFVPLYFNFCVSMYGSECSERNGCGYDDQCPSDTDCVGGPTESH
YCRAWSSWSCQHCSKTAKRTRTCHGCSGKTTETKEMCQIESSCFPDKVLS
YNTGSWGSWRSWEYCPKGTWVVKLQTNIESYQGGDDDTALNAISLRCNND
VGTTIKSGYTNWGTWRAESQKCINGFYGGMLKDESYQGSDDDTSTNAIRL
ICRDNNQWYKSGEGGWGSWTQSTYCPAGYKIVGLQTQIESYQGSDDDTSL
NGVRLLCRYFG

Run BLAST on NCBI

transcript from alignment at sc0000089:64494..68600+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008948 ID=TCONS_00008948|Name=TCONS_00008948|organism=Clytia hemisphaerica|type=transcript|length=4107bp|location=Sequence derived from alignment at sc0000089:64494..68600+ (Clytia hemisphaerica)
TATTGTTAACATTATTCAAGTCGTTAATTcgtttaatttcaaaaaatcat
aagatAGGGGCTCACTCAAGATGAAACATTATATTTCAATGATCGTGTTG
CTTCTCTCTCTCCTTGGTGTCAACACCAAGTGTACTGGTGATGATTGCAG
TCCAAATTGGTTACCCTTTGATAATATGAATTCAGCGCTCAAAGGTTACG
ATATTATGACTGGTAATCCATTTAGCAATGGTAAGGATCCAGGCTTCAGA
CAACAAATCTTCGTACCAACTCTGAAGAATGCAGAACATCGATACGAACT
CCATTCAGCTTTCACATACGACAATGAAGTGTACTGTGACACNGTGAAGA
ATGCAGAACATCGATATGAACTTCATTCAGCTTTCACATACGACAATGAA
GTGTACTGTGACACGAAAATGACAACTGATATTTCTTCTACCTCAAAAGA
ATACAGGTGAGTGGCTTGGTTTTATTTGCCTCTACCGTTCTCATTTTTTC
TTGTCTTCTCTACATTTATGGGCTAGTAGTGAGAAATTCTcatattttta
ggttttggcTAAAATCACTTTAAATGCACAAACCTTCCCAACCCAGAAAC
TTTTGCAAGGTCTAAAAGCCTTGAAATTCACGACTAAATTTCACGAATCA
TTGgacaaatttcatttcttttaacGAAATAATTGGATGGAAGTAAAAAC
ATATATGGAATCTCGTTAACGCCTTATCTTTGACTATAGGATTAATGTAG
GATAAAATAAGCTgatatttgataattttaaggACTTGTATGGTGAcaat
atttttcattctttcaGATAGCTTTTTGCGAGCACAAACTAAGATATTCT
CTTTTGCCTgtttgcaaaagtttttttatactTAGGGAATTGCTCTTCTA
AGAGAAAGCCTATAGTTTAAGCATTGTCACAATTCCTCTAAATACTTGGT
CTAATCGTTTATAATTTGTTTTAGGAAATTCATGCGTGAAACATCCAAAT
CTGGAGTCGATCTACAAGTTGGAACTGAAACTGAAGTTACAGCTGGCATT
GACATTAAGGGGGCAAGCATATCGGCTACCAAAAAAATTCCAGAACCTTT
CACTAGAGCTTGGGGAAAATCAAACGATTTCCAATCAATGCAGGGTTTGT
TCagtgaaaagaaaagtttaGTAGCGACTTCATTTGCGAAATGCCAGCTT
TACGAAGTTATTATCCATACGTTTTCTTCGATTCCACCTCTTATGGAACC
ATTCAAGAAATCAATCAAAGAACTACACCAAGCAAGTGGTGCTGATAAAA
ACACTCAACTTCGAATCTTCAAATCCTTCATTCGGCATTACGGAACCCAT
TTCTCAATCAAAACATCATTCGGTGGGGAAATCGTCCACAGAACCGTCTT
CTCAAGttcaacaaaaaagaaattcgatggcgaaaaaataaaaaaatgtg
agTATGTGAGAGGCAGTAAAATATTTGGAATCCAAGTCGAGCAAGATAAA
GAAGGATGTTCGTCAACCGATGAAAAACGCTTATACAATGAGCAAGGATC
GACCATTGTCAGCTCAATCATGTCAAAAGGTGCTCCACCCGAGAAAGACA
TCTACACTTGGGCACAACAAGATTTCAAATCAGTTCCTTTGAAATATCAA
TTATCACCCATCATTAATTTATTCAAGAAGAAGTATTTGGATGATGGATT
GCAAGTATCAGCAGAAGGTATTCGTAAATGGTTTGTACCGTTGTATTTCA
ATTTCTGTGTATCGATGTATGGTAGTGAATGTAGCGAAAGAAACGGATGT
GGATATGATGATCAATGTCCATCAGATACTGATTGTGTTGGAGGCCCTAC
CGAATCGCATTATTGCCGAGGTACGTATGTTTATATCAAAAGGTTTTCAC
CTAAGTAACTTCGAAATCTAGATGTGAATTGAtattgcagaaattgaaaa
tttgttttctaCAGTAGATCAGCTTTTGCCTCTAAGGTTTCCCTGAACTT
TCCTGACGTCTGAATTTTAAGACTGTATTatgatttcatgatttttttat
atgaacgtccaaaaactttgaagccttcggatggtatcaactttttgagt
tttaagcttaaaaaagttcttaatatgtttttttttcaccattttttgag
tactattgtccattttcctaaaagaaattgggtgtttaagagtccacgaa
gccttacaatgttcttaacttgttcttatatagactataactagactttt
tggcaagttttttaagcaaagtATAACTATTATCCTTCCACTCTTACTGT
CTCCAAGAAAATTGGGAACTGATTTCTCTTTATCTTGTATTCTTTTACCA
GCTTGGTCAAGTTGGTCATGTCAGCATTGTTCAAAGACAGCCAAACGAAC
ACGCACGTGTCATGGATGTTCTGGCAAAACGACCGAAACTAAAGAAATGT
GCCAAATTGAATCTTCATGCTTCCCTGACAAAGGTAATACAGCCCTGTCT
CAAGTGAAAGTGCTTCGTAGTTTTTTAAAGAGGAAAACAAGTACTTGACA
GGGTTATTATTCACTGGGGGCGAGTTTAGCCGCATTCGGTGAAGGACTTT
ATGTCATAATCGCTACGACCGTTCTATTTAGGTTATATAATTGAAATTAA
CAAAATCCACATTCAGTATTTGTCAAATACTGAATGTGGATTTTGGGATT
TGTTAATTTCAATTATATAACCTAAATAGAATGGTTGTAGCGATAATTAC
TTTTTGAAGTTGCCAATACCAATTTTCTTTAGCtcaaattttacttttca
ttCAATCTACACACATTTACCATCTATCTAcactaaaaatatatattttt
tagttttaagctaCAACACTGGTTCATGGGGCAGTTGGCGTTCATGGGAG
TATTGCCCAAAAGGAACCTGGGTTGTCAAGCTACAAACAAATATTGAAAG
CTACCAAGGAGGTATAGAATCTTTCGTAAAAAGTTGTTTCCGAGAATTTC
ATGGCATggttttgttaaatctcttcAGTTCCTACCAAGTATAATTTTCA
TCATTGTCGTTCTTGAAATTAATTTACTAATTCActtaaataaacaaaat
tacCTCGGATTATAAATTGGTTCTCAGGTCAAATTCTCTTATAAACTGGC
GGGGTTCTATAAATACATGTATTTTGCATCTTGTCTTAGAACAGTTACAA
CTCGGGATAGAGAGATTGAAATTTGCTAACTAACTATAGCTAGATActca
ctttcaattttttctctttgttcaatgaatgtttctttttatccCAGGTG
ACGATGACACGGCATTAAATGCGATCTCTTTAAGATGTAACAATGATGTT
GGCACTACCATCAAAAGTGGATACACCAATTGGGGAACTTGGCGAGCCGA
GTCACAAAAATGTATTAATGGATTTTACGGTGGAATGCTAAAAGATGAAA
GCTACCAGGTAATACACATTGGACTTCTGTAACTTATCTCATCTTTGAAG
AATCAAGAtatcattttaaggcttttaaatGTTCAGCAGTCAATAATTTC
GGTTTCCCAAGAGCCCAAGAAACCAAATTTACCCCTGTTTAAAAGTTCTT
CTTAGTGAGTTGTTATTTTCACAGTTGATATACCATTACACCTCCTCAAT
AAAGTTGATTACATAGATCCTTCTACTCTtcttatcaaaatatttattca
aatcCCAACCCCTCCCACGTGCTAAAATTACCTTGTAAGAAATAAATCTT
ATtttataatgaattttcaggggTCTGATGACGATACTTCGACCAATGCC
ATTCGTTTGATATGTCGAGATAACAATCAGTGGTACAAAAGCGGTGAAGG
TGGTTGGGGTTCATGGACACAAAGCACTTACTGTCCTGCTGGCTATAAAA
TTGTTGGTCTTCAAACACAGATCGAAAGTTACCAAGGGAGTGACGACGAT
ACTAGTTTAAATGGTGTTCGATTGTTGTGTCGATATTTTGGATAAGGCAA
TGGTGATACGGATAGTTGATAAAGGGGGTGTTTGTGCATTTTAACTAATA
CTAATTATTACGAATTGtatacttttttgttttcttttgttaattatGAA
TTGCatg

Coding sequence (CDS) from alignment at sc0000089:64494..68600+

>TCONS_00008948 ID=TCONS_00008948|Name=TCONS_00008948|organism=Clytia hemisphaerica|type=CDS|length=1836bp|location=Sequence derived from alignment at sc0000089:64494..68600+ (Clytia hemisphaerica)
ATGAAACATTATATTTCAATGATCGTGTTGCTTCTCTCTCTCCTTGGTGT
CAACACCAAGTGTACTGGTGATGATTGCAGTCCAAATTGGTTACCCTTTG
ATAATATGAATTCAGCGCTCAAAGGTTACGATATTATGACTGGTAATCCA
TTTAGCAATGGTAAGGATCCAGGCTTCAGACAACAAATCTTCGTACCAAC
TCTGAAGAATGCAGAACATCGATATGAACTTCATTCAGCTTTCACATACG
ACAATGAAGTGTACTGTGACACGAAAATGACAACTGATATTTCTTCTACC
TCAAAAGAATACAGGAAATTCATGCGTGAAACATCCAAATCTGGAGTCGA
TCTACAAGTTGGAACTGAAACTGAAGTTACAGCTGGCATTGACATTAAGG
GGGCAAGCATATCGGCTACCAAAAAAATTCCAGAACCTTTCACTAGAGCT
TGGGGAAAATCAAACGATTTCCAATCAATGCAGGGTTTGTTCagtgaaaa
gaaaagtttaGTAGCGACTTCATTTGCGAAATGCCAGCTTTACGAAGTTA
TTATCCATACGTTTTCTTCGATTCCACCTCTTATGGAACCATTCAAGAAA
TCAATCAAAGAACTACACCAAGCAAGTGGTGCTGATAAAAACACTCAACT
TCGAATCTTCAAATCCTTCATTCGGCATTACGGAACCCATTTCTCAATCA
AAACATCATTCGGTGGGGAAATCGTCCACAGAACCGTCTTCTCAAGttca
acaaaaaagaaattcgatggcgaaaaaataaaaaaatgtgagTATGTGAG
AGGCAGTAAAATATTTGGAATCCAAGTCGAGCAAGATAAAGAAGGATGTT
CGTCAACCGATGAAAAACGCTTATACAATGAGCAAGGATCGACCATTGTC
AGCTCAATCATGTCAAAAGGTGCTCCACCCGAGAAAGACATCTACACTTG
GGCACAACAAGATTTCAAATCAGTTCCTTTGAAATATCAATTATCACCCA
TCATTAATTTATTCAAGAAGAAGTATTTGGATGATGGATTGCAAGTATCA
GCAGAAGGTATTCGTAAATGGTTTGTACCGTTGTATTTCAATTTCTGTGT
ATCGATGTATGGTAGTGAATGTAGCGAAAGAAACGGATGTGGATATGATG
ATCAATGTCCATCAGATACTGATTGTGTTGGAGGCCCTACCGAATCGCAT
TATTGCCGAGCTTGGTCAAGTTGGTCATGTCAGCATTGTTCAAAGACAGC
CAAACGAACACGCACGTGTCATGGATGTTCTGGCAAAACGACCGAAACTA
AAGAAATGTGCCAAATTGAATCTTCATGCTTCCCTGACAAAGttttaagc
taCAACACTGGTTCATGGGGCAGTTGGCGTTCATGGGAGTATTGCCCAAA
AGGAACCTGGGTTGTCAAGCTACAAACAAATATTGAAAGCTACCAAGGAG
GTGACGATGACACGGCATTAAATGCGATCTCTTTAAGATGTAACAATGAT
GTTGGCACTACCATCAAAAGTGGATACACCAATTGGGGAACTTGGCGAGC
CGAGTCACAAAAATGTATTAATGGATTTTACGGTGGAATGCTAAAAGATG
AAAGCTACCAGgggTCTGATGACGATACTTCGACCAATGCCATTCGTTTG
ATATGTCGAGATAACAATCAGTGGTACAAAAGCGGTGAAGGTGGTTGGGG
TTCATGGACACAAAGCACTTACTGTCCTGCTGGCTATAAAATTGTTGGTC
TTCAAACACAGATCGAAAGTTACCAAGGGAGTGACGACGATACTAGTTTA
AATGGTGTTCGATTGTTGTGTCGATATTTTGGATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005025	XLOC_005025	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00008948-protein	TCONS_00008948-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000089	supercontig	sc0000089:64494..68600 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.34359	4.93398	3.37653	3.04002	0.703955	0.529091	0.40701	0.451484	1.29991	1.35137	1.5488	0.808064	4.75566	1.86259	19.1722	34.2813	1.36962	1.01916	0.826338	0.850935	0.394692	0.482075	1.47696	0.936288	0.24859	0.631892	0.137911	0.274103	0.434669	0.369073

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR020864	MACPF
IPR005515	VOMI

Blast

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BLAST of TCONS_00008948 vs. Swiss-Prot (Human)
Match: VMO1 (Vitelline membrane outer layer protein 1 homolog OS=Homo sapiens GN=VMO1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.308e-16
Identity = 61/163 (37.42%), Postives = 80/163 (49.08%), Query Frame = 2

Query: 1430 GSWGSWRSWEYCPKGTWVVKLQTNIESYQG-GDDDTALNAISLRC--NNDVGTT--IKSGYTNWGTWRAESQKCINGFY--GGMLKDESYQGSDDDTSTNAIRLICRDNNQWYKSGE--GGWGSWTQSTYCPAGYKIVGLQTQIESYQGSDDDTSLNGVRLLC 1891
            G WG W   E CP G +       +E  QG   DDTALN I L C   N +G T  ++S   +WG W +E   C  G Y     L+ E+     D+T+ N +R  C D  +    G   G +G W  S +CP G    GLQT+I+  +G  DDT+LN  RL C
Sbjct:   42 GPWGDWAWPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVVESQSGSWGEW-SEPLWCRGGAYLVAFSLRVEAPTTLGDNTAANNVRFRCSDGEELQGPGLSWGDFGDW--SDHCPKG--ACGLQTKIQGPRGLGDDTALNDARLFC 199

The following BLAST results are available for this feature:

BLAST of TCONS_00008948 vs. Swiss-Prot (Human)

BLAST of TCONS_00008948 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VMO1	2.308e-16	37.42	Vitelline membrane outer layer protein 1 homolog O...	[more]

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TCONS_00008948 (transcript) - C. hemisphaerica