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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008952 ID=TCONS_00008952|Name=TCONS_00008952|organism=Clytia hemisphaerica|type=transcript|length=1105bp
TGCATATGTATTTGATAagcattgcaaatttagtgaaacaaacacacaca
agaactttctttctatagaaatggttttgccaTGTGGTTATTTGACGATG
GCCAAGGACAGCAAGTTGCTCAACAAGAAGACCATCAACCACACCAGCAA
ATTCATTTGCATCAAACAAACATCCATTATCACCAAGTCAACCACTATCA
CGTCAGAGAAAGAAGATGATTCGTTGAGAGAATATCTCTAAAAGACAATA
AATTTGCACCTATATGTACATACATATCCTCTTGTGTAACTTCTAGTAGG
GGGGCAACCTTTAAAATCGGTAGCATCTTTCGTGAGACGCAACTGTATGT
AATTGATTCGAAAGTAGATAGGACTTtgagacttttttgagagggggccC
GCCAAATACGCCTGGTTTAATTGTCAAAAAACTAACGTTATAGGCAAAAC
TCCTAATTCCAAAATATGAGTAAGAAgttgacatttttttaaagttgaat
taaacgaaaatgattgatacCATCGAATAAAACATCTTTTTTTCTATACT
AAAtgaatttcatattttgtgTCCGTCACGCATGATGGCAGCAAAGCTGC
GAAAGTTTGTCGAGTATTGTCGTCATTGTTTACTAGCTAATTTTATTGTG
AAGATTTCAAGTCATATTCTCACATTCaatttgaagcataaaaagGTATT
CACAAGAAATCTTTTGATGTACTCCGAAAACTAATtcaaattttccttca
aaataaagttagagagcatcaacaatACGACCTTTATCATCGTAAGGGCT
TTTGGTGCAcaagctaaaccggcgtttgcaacgacgggaaccgtctaatc
taccgggtgacccacgaaaaagttcggacagtTTTCGGCGTCTCGAGGCC
GAAGAAATGTctcaaagtgcttgaaattttcatatgtagaaagtagatat
tctaacttaaagtttgagctattattttttaaatttgacccacAAGTtcc
ctacttatgagcttttaaagtcaaaattaacTTTTCGGAATGAgcgaaat
tacgtcaaaaaagaggtatcaaattgttttattatcaatcaatcaagtaA
GGTCG Run BLAST on NCBI transcript from alignment at sc0000089:123793..127531+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008952 ID=TCONS_00008952|Name=TCONS_00008952|organism=Clytia hemisphaerica|type=transcript|length=3739bp|location=Sequence derived from alignment at sc0000089:123793..127531+ (Clytia hemisphaerica)
TGCATATGTATTTGATAagcattgcaaatttagtgaaacaaacacacaca
agaactttctttctatagaaatggtacgactcgatactttttttccggac
accctgtagcATGAAACTTTTAGTAATGTATTTTATATggtgattttgaa
aatataacttTATTTCTTTATGACTCGCACGGTAATCTAATGTGgaactt
taaaaaattgggaTTTTTTCGGCTATCTTTGTTGTTATGTTTGAAATTAT
AGTGTTTATatggagatgaaattttgcatttttaccCCGCATATTTGCTT
TGCTTCTATAACGAAAAATCAAGTGGAAATTTGTTCTAGGAGCAAAGCGG
AAACTTTCAGTGGGGATAAGTCTACCTGATGGTGCTCACGGTTGTATCAA
cgtctagcctggatatccaagctcaaaattttagaaaaaacaaaatttcc
ctcaacatacaaagttctaaaattatagagcttggtctccctagagaatg
aaagtgaaaacccatgtttcctagccaacccagggcagcaaaagcAGTCc
gtacaagatctaaaactatttaaaacatccaaagattacatcaaagtcca
taaaaaagtttgcatgcattatcatgaccaaccatgttttcttggaaaat
gaacttggctctgttttcttctttttcatgttttcatgttttcatgtaac
agaaagccctatcttcactagcaactggaggactatcctatttttgcttt
agaattgctcaacgccgtgtagattggcccttgcggttttagcgaagtga
gcgcaatcaagcggactgcattctctaaagagaatgcaaatcgctctagg
gagaccaggctgtaagccagaacataaaatatcaaaaactagactgtgaa
atagtttacagcctggatatccaggctaatcaACGTCTTGATATTGGATA
TTTTTTCGTGTATTACGCATTGTGAAACTCGTGGTTAGTAAGATTCCATC
GGTTACTAGGGATTGATTCATCCTGTCAGAAAACGTAGTTTAGTACTGAC
TTGTGTgggataaaataaaattgtattCAAACATCACTTTATCTCTTGTC
TATGTATAGAATTTTTAATTAGTTTCTCACCATTCAGCTATTCTGAGATC
CTAAAGACACTATACATCTCTTTCAAACTAAGCAAATTGTTTTATGAAGG
AtgtactttcgtttttaatGTACTTTACAGTGAAGGTTTCATATCACTTT
TACTTTATATGTAATGTAAGCTGTAATGTTCCATCATATGTGGTAGTAAT
TGTGGTATCTAGCAAATGCTTAGGTAACATCGGTAAAGTTTCTAACTAGT
TTCTCTTTTGACCAAAATGGTGCGGTGACTCTCAATTTTGATTGAAGATC
TAATTCAAAAAAGTGGAACACTGTATACATAGAGATCTTGAAAAGAGGTT
TCCAACAAACCCAAATATGATAAATTCTGCTTTAGTTAAGGCCGGGGTGA
TTACATTTAAAGTTGCCATACCGCGTTGctttaaaaaatccttaaatttt
agtttcaaaaaGTACCAAAGAGATTAATCACAAAATACGAAAAGGAAAAT
CACAATAAGTCATTGATGGTAAGCCATGgccgattatgacgtcattaaaa
aagcGGTGGTCGGCAGTGTTGCCATAATTGGAGGAACCTCTTTACTGACT
GCTGGTTTAGCAACTGCGCCGATTACTGGTTCTGTGGGTTTAATGGCGTT
TGGGTATACATCTATTGGTGCCATTTGGGGAGGAGCTGTAGGAGGTAAGC
CTAGCAATCATCTTTACTGTATTCACGAATAAGTTCCCGGATATTCTCGC
TTTAGTTTAAGGTCAAAGTTCAACATAATTTTTGGGAATCTTTGTTATTG
TTTCTCCTTCGTGTATGACGCTTTCTGATGTAGCTTTCTGGTACAAAAGG
AGTGAAAGAGCACAAAAAagcatcttgaattttttgtttgttatatTGAC
TTGTTGGTTTGAGGCTTTCTCTCGACTACTCTTTTGCTTTGGGTGATTTG
ATTTACCCAAAGGTTTCCCAGCAAAATTCCATTATTAATcttatacactg
aatgaaatacacccccttctcacagaaccgGTAGATaggaatttttcagc
cagtggggataaaaattactGACTGAAAGTCGATGGTGATTGATATTCTA
TTACGATATTTTTTGTGGCGGGGAAtttcaattcctttgttttcaagtaa
gaaaattcagtggggatgggaaaaatagcataatattttccAGGATTAGT
TCATTtggttattttcagtggggacaaaaatcagaagataattttccacc
gggatgATATTCTAggaaatttttccagtgggaaggggtcccagtaggTC
TGTGAGGAGACGGTGTTGAAATTAACACGATCACATTGTCAAAATCTACT
GGTTGACTTGTGTGTGAAAAAGAGGAAGAGAATTGCCAGCAAGGGGTTTT
CACATTTATCTAAGAAAAATGTAGCTCACGTAGAaaccaaaaaacatttt
tatcgaTCGGCAGTCAAATGGTTTTGAGGGCTTCGAGGCCTGTTAATTCC
TTCTATGTGGTCTTTAGCAAAACTTCCTGTattctttttgcctaaactgt
TTTCAAGAGAAGATATTCAAGTTACAATACAAGTTACATCTTTAATAttc
tttttaggttttgccaTGTGGTTATTTGACGATGGCCAAGGACAGCAAGT
TGCTCAACAAGAAGACCATCAACCACACCAGCAAATTCATTTGCATCAAA
CAAACATCCATTATCACCAAGTCAACCACTATCACGTCAGAGAAAGAAGA
TGATTCGTTGAGAGAATATCTCTAAAAGACAATAAATTTGCACCTATATG
TACATACATATCCTCTTGTGTAACTTCTAGTAGGGGGGCAACCTTTAAAA
TCGGTAGCATCTTTCGTGAGACGCAACTGTATGTAATTGATTCGAAAGTA
GATAGGACTTtgagacttttttgagagggggccCGCCAAATACGCCTGGT
TTAATTGTCAAAAAACTAACGTTATAGGCAAAACTCCTAATTCCAAAATA
TGAGTAAGAAgttgacatttttttaaagttgaattaaacgaaaatgattg
atacCATCGAATAAAACATCTTTTTTTCTATACTAAAtgaatttcatatt
ttgtgTCCGTCACGCATGATGGCAGCAAAGCTGCGAAAGTTTGTCGAGTA
TTGTCGTCATTGTTTACTAGCTAATTTTATTGTGAAGATTTCAAGTCATA
TTCTCACATTCaatttgaagcataaaaagGTATTCACAAGAAATCTTTTG
ATGTACTCCGAAAACTAATtcaaattttccttcaaaataaagttagagag
catcaacaatACGACCTTTATCATCGTAAGGGCTTTTGGTGCAcaagcta
aaccggcgtttgcaacgacgggaaccgtctaatctaccgggtgacccacg
aaaaagttcggacagtTTTCGGCGTCTCGAGGCCGAAGAAATGTctcaaa
gtgcttgaaattttcatatgtagaaagtagatattctaacttaaagtttg
agctattattttttaaatttgacccacAAGTtccctacttatgagctttt
aaagtcaaaattaacTTTTCGGAATGAgcgaaattacgtcaaaaaagagg
tatcaaattgttttattatcaatcaatcaagtaAGGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008952-exon-sc0000089-1491911889:123793..123865 | TCONS_00008952-exon-sc0000089-1491911889:123793..123865 | Clytia hemisphaerica | exon |
| TCONS_00008952-exon-sc0000089-1510915933:123793..123865 | TCONS_00008952-exon-sc0000089-1510915933:123793..123865 | Clytia hemisphaerica | exon |
| TCONS_00008952-exon-sc0000089-1575043694:123793..123865 | TCONS_00008952-exon-sc0000089-1575043694:123793..123865 | Clytia hemisphaerica | exon |
| TCONS_00008952-exon-sc0000089-1491911889:126500..127531 | TCONS_00008952-exon-sc0000089-1491911889:126500..127531 | Clytia hemisphaerica | exon |
| TCONS_00008952-exon-sc0000089-1510915933:126500..127531 | TCONS_00008952-exon-sc0000089-1510915933:126500..127531 | Clytia hemisphaerica | exon |
| TCONS_00008952-exon-sc0000089-1575043694:126500..127531 | TCONS_00008952-exon-sc0000089-1575043694:126500..127531 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000089 | supercontig | sc0000089:123793..127531 + |
Blast
The following BLAST results are available for this feature:
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