TCONS_00009038 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009038
Unique NameTCONS_00009038
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length723

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009038 ID=TCONS_00009038|Name=TCONS_00009038|organism=Clytia hemisphaerica|type=transcript|length=723bp
CAAGCGTTAGTTTATTTGGTGCCAGGGGTATTGAATTGTTCCAGGGCAAA
CAACACAATTACGAAATACGAATGTTATTTTAAACAATGGGTTAATTGGT
GTAATTGTTTTCAAGAGATAGTGCCATTACCAGCAAAAATTCAACATATC
ATTTTGTTTATAGTCGCATCGGTACAACAAGCAAAGTCTTATCCGagcCC
TTACATCTGCACACAAATTAAGGAGAATAAACAAGTCTATTTCATATTCT
TCAATCCGGGATCAATTTAAAACGATATTGAGTTTACTTGGCTACAACAA
AGCACTTTTTGGTTTACATAGTCTAAGGTCGGGAGGAGTCACGGCGGCAG
CTAACCTTGGTATCAAAGACAGGTTGTTGATGAAGCATGGTCGCTGGAAG
TcggcaaatattaagaataattATATATCCGAGAACTTAGGTAATTTATT
GTTTGTTTCGAAAAATTTAGGGTTATAAAGTATTAATAATGTACGTTTTC
AACATTACCCTCTACCAGTTTTGAAGCGAAATTTATAAGTTTGTCTCATG
CTCTTAGTCCACAGGCTTTGGTACGGCTCCTACTACCAGAATACAAAAAG
CTGTCTCGAAATCGAGATTTTTGGTGTTCAGTTATTCTTTTTCCCGTTTT
CGGTCTTTTGTGTTTTCCATTTGTGATCTGTGACTTTTCGGAGAATTAGG
AAataaatcaatttattttcGGT
Run BLAST on NCBI

transcript from alignment at sc0000089:468266..472313-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009038 ID=TCONS_00009038|Name=TCONS_00009038|organism=Clytia hemisphaerica|type=transcript|length=4048bp|location=Sequence derived from alignment at sc0000089:468266..472313- (Clytia hemisphaerica)
CAAGCGTTAGTTTATTTGGTGCCAGGGGTATTGAATTGTTCCAGGGCAAA
CAACACAATTACGAAATACGAATGTTATTTTAAACAATGGGTTAATTGGT
GTAATTGTTTTCAAGAGATAGTGCCATTACCAGCAAAAATTCAACATATC
ATTTTGTTTATAGTCGCATCGGTACAACAAGCAAAGTCTTATCCGGTAAT
AGAGTCAACCCTAATGGCCATAAAATATTTCCACAGCGTGTCGGTCATGC
ATTAAAACATTCGAAAATGTTAGAACATGTTTTAGAGGCGGCAAAAAGAT
TGGTGGGGAAGAGCGCTATAAAGAAGGAACCTGTCACAGTAGACATGTTA
AGGAGAATGGTGAAAGTTTTGTCAACATCGAAGAATAACCTCAAAAGCTT
GAGATTGACTACGATTTTACTTACGTCTTTCGCTGGGTTTTTACGATTTT
CTGAATGTGTGAATTTACGAAGATCCGATATAAAATTTTTTGCCACACAT
GCTGTTCTTTTTATTGAAAAGAGTAAAACTGATATTTATAGGGTCGGACA
TTGGTTACATTTGGCAAGATTANCGAATGTGTGAATTTACGAAGATCTGA
TATAAAAATTTTTTTGCCACACATGCTGTTCTTTTTATTGAAAAGAGTAA
AACTGATATTTATAGGGTCGGACATTGGTTACATTTGGCAAGATTAGATT
NATCGCCTCTATAGATTAAAATGTTTGCTTCCATAATGGTGGAATCTACC
TCATTTGGGGCCGTCTACATAGTACGTACGCACTAAAATGTCGAAAATCG
AGACCCACCCCTCCCCCCTTAGTGCGTGTACTATGTGGACGGCCCCTTTA
ATAACACATTTGAGTGCCATCACTCCGTAACAAATGAATTAAATATATTT
TAGACCTAACTCCAGGTACCCCGGTGCAGGTCCTTTAAATTAACCTGTGT
TCGTCCGTCCGTCCGTTCGTCTGTTACCAGCTTTTCTCGAGATTGGTTCA
TTACTTTTTTCTGATTTCTTGCACAATGATGTAAATTGATGATTCCTAAA
AAGTGACGGAGCCCGATTTTTATGCCGGAAAAACTGTTTTTTGGCATTTT
CTCGAGATTTTATCTTTGAGCTTTTTTGCTCAAAGATGTGTATTAACAAT
GCCCAAAACATGCCCAAGTCCGATTTTTGAGAAACAAATTTTCCCGGCGG
AAAATACCGGAAATATGCCGGAAATCGCCGTTTTTCTGGTTTTTCATTGG
ACTTTTTCCTTATAATTGGTTGTTATTTCATTCAAAAACATTATTATTAG
CAATGCCCACCATCAATCATGTTTCAATTTTCAATAAAATTGATTTTTGA
AGCTGGAACTATTTAAAAATCGTCGGAACAACCTATTTTCGTCGGAAAGA
CAGTATTTCTTGAATATCGAGCTGTACTTTATATTTTTTTATGAAATTTT
ACACACTCATGCAAAACGACAATACCTAAAATGTGACGGAGCCCATTTTC
AAAAAAAGAAATTCCAGAAAAACCGGTTTTTTGACATTTTTTCGAATTTT
CATCCTTTGTTTTTTCTGATTTTTAGCAGAAAGATGCGTATTCGCAATGC
TCAAAACATGGCCGAGTTTAGCCAGTGCCTTCCCACAAACCAAACTTTTT
CTTTGTTTTATGGTCAGTTACACTTTGAAGCGTTTGTCGAAAGTTATCGC
ACTGTGGTCTCAATTTTTGAGTTCCGTGCATTAAAATCAAAAAAAAAGAA
TCCTCGGGATCGGGATGGAGTTTGGTGAGCTAAAAATGTTTTTTTTTTAA
TTATTTTGATACACCCCTAAATTATAACGAAAGAACTATAGAAGCAAAAA
AGTTTCCAAGCAGCTCCAATTAATGGTATTGTCAACAGGCTCTTAATTTA
GAAAGGTAATGAGATAATCCCACTCCTTCAAAAGGTTTTCTTCCTTGTAG
AGAAAAGCAACCAAAATCAAATAAAAGAAAACTCTCAACACTAGCCATAG
CCAGTTTTTGAAACAGGGATGTAAAATAAAAAATAATGAGGATTCCAAGA
CTATCATTTGATGAAAATGAGTCGATCTCGTGCAATTTCAGGATTAAGAG
GTACAAATAATAGAAATATGTCATTAATGTATTTACCAAAAAATTTAGCA
AAGTTCTGCCAAACCTCCACATTTTACTGGTTTACTATCTAGTTTCCAAA
GTTGAGAAATTTAAATCTAAAATCTGCTCTCAAAATCAATTAGTAGTTTT
AACTCTGATTATACAGGACCAAACTCTTCACATTAAAATGTAAAAATTCC
CCGAAAAATTCTAGAATAATATCATAAAAATAGTGTCAAGTTTTGGCAAT
CGTCCAGAATTGTCAAGACTTGTATGTCACTGGTGAAGACAGCTGTGAAG
AAAGTTTTTCATTTCCATTCCCAGCAAACTTTCGAATCGAATACAATCAG
ATTTCACTTTACTTTCGATCATATGTCAATTTACTTTCCACCATTTTATT
AGTGGAATATTTTCAAACTAGCGACCAGATAGAGACCACATCGAACAGCC
AATAAAAACAATAACAAACAAACAGTTCTTCTTTCCACTGGAATAGGCCA
GGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGGCCAGGAATAAACAAAATAAATTCTTCCAGGTTTCATGCC
ATATCCAAAAGATATTCGTTGCCATCCCAAAGCATACAAAAAGTACAAGT
TCGTCTTCAATCATCGACGTTGCATTGCAGCACTTATGGTTCTAGCTAGG
ATAGGATCTAATCTGATTTGATAATCTTCATTCTCAATGTTTACAGTTAA
TCTCTGGGATTCTTCAATCCTGTTATGGAAATAACCCAACAACTCTGCTG
CTGTTGATGCAAAAAAAAGATTTCCATCTTCTATTCTCCTCCATCCACTG
ATACTGTTTCTTTTTCGTTCGGTTTCAACTTTTCAAAACAAATGATTTTG
GTTCTCTCTCAAAAAAAATTCAAANGGTTTCAACTTTTCAAAACAAATGA
TTTTGGTTCTCTCTCAAAAAAATTTCAAAATTCGAATCACAAAATTCGAA
TTACAAAATTCGAAAGATCGAAAATCTATTTGAACTTTACCGATCGAAGC
AATGCAGCGACTTCTTAAAAAACGAAAAAAAGCACACGCGATGGAGTGCA
GCTTGTCCAAAGTCACGGTAAAATGAGCTGCGCCGAAGAGAAAATCTTGG
ACGGACTTTCCCGTCCAAGAACATTCGATTCCACGGCAAAAAGTAACAGA
CGTTAAATCGCGATAAAAAAGCGNNNNNNNNNNNNNAAATCTTGGACGGA
CTTTCCCGTCCAAGAACATTCGATTCCACGGCAAAAAGTAACAGACGTTA
AATCGCGATAAAAAAGCGGTTTTCGTCTAACAGGCTAGGAACAATCTAAC
TCTGACAATTTTATTTTTAGAGCCCTTACATCTGCACACAAATTAAGGAG
AATAAACAAGTCTATTTCATATTCTTCAATCCGGGATCAATTTAAAACGA
TATTGAGTTTACTTGGCTACAACAAAGCACTTTTTGGTTTACATAGTCTA
AGGTCGGGAGGAGTCACGGCGGCAGCTAACCTTGGTATCAAAGACAGGTT
GTTGATGAAGCATGGTCGCTGGAAGTCGGCAAATATTAAGAATAATTATA
TATCCGAGAACTTAGGTAATTTATTGTTTGTTTCGAAAAATTTAGGGTTA
TAAAGTATTAATAATGTACGTTTTCAACATTACCCTCTACCAGTTTTGAA
GCGAAATTTATAAGTTTGTCTCATGCTCTTAGTCCACAGGCTTTGGTACG
GCTCCTACTACCAGAATACAAAAAGCTGTCTCGAAATCGAGATTTTTGGT
GTTCAGTTATTCTTTTTCCCGTTTTCGGTCTTTTGTGTTTTCCATTTGTG
ATCTGTGACTTTTCGGAGAATTAGGAAATAAATCAATTTATTTTCGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005053XLOC_005053Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009038-exon-sc0000089-1575043694:472119..472313TCONS_00009038-exon-sc0000089-1575043694:472119..472313Clytia hemisphaericaexon
TCONS_00009038-exon-sc0000089-1575043694:468266..468793TCONS_00009038-exon-sc0000089-1575043694:468266..468793Clytia hemisphaericaexon
TCONS_00009038-exon-sc0000089-1510915933:472119..472313TCONS_00009038-exon-sc0000089-1510915933:472119..472313Clytia hemisphaericaexon
TCONS_00009038-exon-sc0000089-1510915933:468266..468793TCONS_00009038-exon-sc0000089-1510915933:468266..468793Clytia hemisphaericaexon
TCONS_00009038-exon-sc0000089-1491911889:472119..472313TCONS_00009038-exon-sc0000089-1491911889:472119..472313Clytia hemisphaericaexon
TCONS_00009038-exon-sc0000089-1491911889:468266..468793TCONS_00009038-exon-sc0000089-1491911889:468266..468793Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:468266..472313 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.36623	7.00539e-10	0	0	0	0	0	0	0	0	0	0	0.180196	0.172867	0.149542	0.271716	0	0.137138	0	0	0	0.255818	0.349504	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009038 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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