TCONS_00009066 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009066
Unique NameTCONS_00009066
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009066 ID=TCONS_00009066|Name=TCONS_00009066|organism=Clytia hemisphaerica|type=transcript|length=527bp
CACAATCACTCAATATTCGATATATGGCGTATGATCTTTTTCGTAAAAGT
GTTACTCGAATAGTCGAACAGTATTGGCTGACAAtgtgacaaaaaaatca
ttgtttggcAACAATACCCGCTGAATGTTAAGTTTAACCATGACATAATT
CCAATAAAATCATAGggtctaaaaagttaaaatatttcgaaatccgAATG
TTGTTTTATAAATCTGATTTGGCTGttgcagatatttggtttgatcaagc
aataaaaatagtttttcatgAGATTAATTGATGTAATAGTaatggttact
ccaatcaattaAATCACAAAAATGTGCCATGAAGTTTGAATGCCACAAAG
TAAACAACCATCACACCATTTATGGAAAATTTCAGCAGTTGACGACAGCC
ACCACCATCAGGAAGTGGAGGATAGGACAGCCCTCacctctcccagagga
agtggtaaaaaaaCCTCAATAATGATACTCgtttaaaatttccaataagt
gTGAGCAGCAGCAAcgtcattttacaa
Run BLAST on NCBI

transcript from alignment at sc0000089:509011..509537

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009066 ID=TCONS_00009066|Name=TCONS_00009066|organism=Clytia hemisphaerica|type=transcript|length=527bp|location=Sequence derived from alignment at sc0000089:509011..509537 (Clytia hemisphaerica)
ttgtaaaatgacgTTGCTGCTGCTCAcacttattggaaattttaaacGAG
TATCATTATTGAGGtttttttaccacttcctctgggagaggtGAGGGCTG
TCCTATCCTCCACTTCCTGATGGTGGTGGCTGTCGTCAACTGCTGAAATT
TTCCATAAATGGTGTGATGGTTGTTTACTTTGTGGCATTCAAACTTCATG
GCACATTTTTGTGATTtaattgattggagtaaccattACTATTACATCAA
TTAATCTcatgaaaaactatttttattgcttgatcaaaccaaatatctgc
aaCAGCCAAATCAGATTTATAAAACAACATTcggatttcgaaatatttta
actttttagaccCTATGATTTTATTGGAATTATGTCATGGTTAAACTTAA
CATTCAGCGGGTATTGTTgccaaacaatgatttttttgtcacaTTGTCAG
CCAATACTGTTCGACTATTCGAGTAACACTTTTACGAAAAAGATCATACG
CCATATATCGAATATTGAGTGATTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005078XLOC_005078Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009066-exon-sc0000089-1491911889:509011..509537TCONS_00009066-exon-sc0000089-1491911889:509011..509537Clytia hemisphaericaexon
TCONS_00009066-exon-sc0000089-1510915933:509011..509537TCONS_00009066-exon-sc0000089-1510915933:509011..509537Clytia hemisphaericaexon
TCONS_00009066-exon-sc0000089-1575043694:509011..509537TCONS_00009066-exon-sc0000089-1575043694:509011..509537Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:509011..509537 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.679259	0.16678	0.339771	0	2.14205	0.757609	2.36652	2.12198	0.346929	0.286623	0	0.528408	0.576658	0.422226	0.80007	0.166834	0.0869469	0	0.865957	0.364809	0.555438	0	1.05019	0.524139	0.314633	0	0.643978	0.88354	0.432746	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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