TCONS_00009147 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009147
Unique NameTCONS_00009147
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009147 ID=TCONS_00009147|Name=TCONS_00009147|organism=Clytia hemisphaerica|type=transcript|length=641bp
tcagaaagtgagtaagaaattaataaaaaaaaaatctcccCAAAAATGGC
TGCAATGCAGAAACCAAAGAAGAAAAGCAAGGTCAATCCAGCAGATACTG
AGATGGAGGAACTAGTTCCATCTTCCACTGACCTTAATGAACTATTTGAA
ACCAATAGCAGTATTCCAGGTAAAAGATTGCTACACTTTTTTAAACAGGA
GTTGAATTGTCAGGTTTTTTTCCTATCAAGGCATTTTTTATTCTTCTACT
GTAATCTGTTCTATGGGACCCAAAATTGAATATTTGCCTGCCTTTGTGTC
TGTTATTTAATAGATAGTCATGAAAACAATTGAGCAATTGTCCAAAAGTA
CCAGGATAATATTGACTCCATAATGATGAATCTAGACAAAAATTCATGCT
TTATAGTGTCCTAGGAATATCGTCATTATGATTTTGTTGTAGAAGTTTAC
CAGAGAGGGGGTCCTCTAGAATTTATGCTCCAGTTGGAACAAGCATCACA
TGAGAAACAAAATGTACCACCAaattattttgctatttttatttCTATAA
TAATGCTTTGGTGACTTTATTCTTTAGGGACAGAAACACCCAATGCGTCT
TTTGTTGCTTTTACTGAGGAGACTGGTCTGGAGTCCTCCAA
Run BLAST on NCBI

transcript from alignment at sc0000090:445848..446488-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009147 ID=TCONS_00009147|Name=TCONS_00009147|organism=Clytia hemisphaerica|type=transcript|length=641bp|location=Sequence derived from alignment at sc0000090:445848..446488- (Clytia hemisphaerica)
TCAGAAAGTGAGTAAGAAATTAATAAAAAAAAAATCTCCCCAAAAATGGC
TGCAATGCAGAAACCAAAGAAGAAAAGCAAGGTCAATCCAGCAGATACTG
AGATGGAGGAACTAGTTCCATCTTCCACTGACCTTAATGAACTATTTGAA
ACCAATAGCAGTATTCCAGGTAAAAGATTGCTACACTTTTTTAAACAGGA
GTTGAATTGTCAGGTTTTTTTCCTATCAAGGCATTTTTTATTCTTCTACT
GTAATCTGTTCTATGGGACCCAAAATTGAATATTTGCCTGCCTTTGTGTC
TGTTATTTAATAGATAGTCATGAAAACAATTGAGCAATTGTCCAAAAGTA
CCAGGATAATATTGACTCCATAATGATGAATCTAGACAAAAATTCATGCT
TTATAGTGTCCTAGGAATATCGTCATTATGATTTTGTTGTAGAAGTTTAC
CAGAGAGGGGGTCCTCTAGAATTTATGCTCCAGTTGGAACAAGCATCACA
TGAGAAACAAAATGTACCACCAAATTATTTTGCTATTTTTATTTCTATAA
TAATGCTTTGGTGACTTTATTCTTTAGGGACAGAAACACCCAATGCGTCT
TTTGTTGCTTTTACTGAGGAGACTGGTCTGGAGTCCTCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005123XLOC_005123Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009147-exon-sc0000090-1575043694:445848..446488TCONS_00009147-exon-sc0000090-1575043694:445848..446488Clytia hemisphaericaexon
TCONS_00009147-exon-sc0000090-1510915933:445848..446488TCONS_00009147-exon-sc0000090-1510915933:445848..446488Clytia hemisphaericaexon
TCONS_00009147-exon-sc0000090-1491911889:445848..446488TCONS_00009147-exon-sc0000090-1491911889:445848..446488Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000090supercontigsc0000090:445848..446488 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.575473	0.633894	0.973548	1.0358	0.617101	0.192466	0.114553	0	0.0961057	0.104782	0	0.0783608	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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