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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009181 ID=TCONS_00009181|Name=TCONS_00009181|organism=Clytia hemisphaerica|type=transcript|length=254bp
CCCTTCCAATGCCATAATCCATATAACCCATCATGGCTGCAAATTTTCTA
CGTCCTTCGTGCTGAATGTGATTGTACTTTCGTATCCATGAATCGGGGGC
TTGCAGTGCATCTGCATCCCTATTAGCACTGTGAACCGCTTGATATGCGA
GGTATAAGAAGAGTGGTTTCGATTGGTCATGATTGTGTATACGACCTTCT
GCTTCAGCTGTGTACATCTCCGTACTGTAGTTACCCCATTGTGTGTATAC
CGGC Run BLAST on NCBI transcript from alignment at sc0000091:35342..42053+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009181 ID=TCONS_00009181|Name=TCONS_00009181|organism=Clytia hemisphaerica|type=transcript|length=6712bp|location=Sequence derived from alignment at sc0000091:35342..42053+ (Clytia hemisphaerica)
CCCTTCCAATGCCATAATCCATATAACCCATCATGGCTGCAAATTTTCTA
CGTCCTTCGTGCTGAATGTGATTGTACTTTCGTATCCATGAATCGGGGGC
TTGCAGTGCATCTGCATCCCTATTAGCACTGTGAACCGCTTGATATGCGA
GGTATAAGAAAAGTGGTTTCGATTGGTCATGATTGTGTATACGACCTTCT
GCTTCTGCTGTATACATCTCCGTACTGTAGTTACCCCATTGTGTCCATAC
AGgctaaaatgacaaaaaaatcagaaagttatTAATAGCAGGAAAGTACT
GATACTGGTGATATCTTCGGACGCTCCAGTAAAACTCAGGGAAGACAGTA
TTGCGGTAATAACAGAATTGGCCCCTCCCCCTAACCTTAATTATTTCTTA
GCTTTGAGCTTATAGCCCTTAGAGCTTCTCGATGAGTGTCATTGTTCATA
GTATCTTTTCTACCTTGTTTGAAGGTCTCAGGTGAAGTTGGAATCAACTG
GAacataaaacaaacaatattgaCGAAGCTCATGACaccaattttgattt
caaaagggAGTAGTGGGCAATAACATCAGGACCACTGACCTCTAAATTGT
CATGTAGATCGAGCCCCCAGTACTTCTCGTTATTGGAGTGGTCCCAATAA
TCAGCTTTCCCAAGGTAGTAGCCATAAAACGAATCAAAGCCTCTGTATGT
TGGAGTGTATTCTTTCGCAAACATACCAACATGCCACTAAGAAATAAAAT
GACGGAAAGTTTGGATTTTATGGATTATATATTTCATTCTTGGGGTAGAG
TGCATTCATTTCTCAAGAAGATCCAACTTTGACTCTCTAAAAGATTGTGA
ACATTGCTTCTCGAATCATAGAACGCGTGCAATACTAATaagtcaaacaa
agaaaaaaaagcatCTCTCACAGGATGAAAAAATCTCCGAATGTTAATAC
ACGACATACCTTGCCGATAGCATGCGTTGCATATCCCTGTTCTTTGAGAA
TCTCTGGTAAGAATGTTTCATTTAAACTGACACCCCATGTGTCATATGCA
AATATTGTGCTTACTTGCATACCTGAACATCAAAAGTAGAAATACTATAA
TTAGACCATATCCAACCCCCTCAAAACATTTCATTCTTTCTTATTTGTCA
ATGGCTTTTGCAACTGGCGCTGGTCAGTTTGAGAGTACTGACTTGAAATT
TAAACGTTAGCAAGCTTGAAAACCTTGCTTGGTATTTCTTGTAATAATGA
TACAGAAATTTTCGTGTTTTATTGAAATTAAATCCTATGAACTTGATAAG
AAAATAATCAACCTGTATGAATAGGGTATCTCCCAGTCATGATGGCACTC
CGAGATGGTGAGCATATAGGTGCAACAtaataattattcaaaataattcC
TTCTTTTGCCAATTTATCAATGTTAGGTGTTGGGATTTGATCTGATCCGT
GGAAGCTGACATCATTCCATCCCTTTGGTGGAAAAGCAGACATTAGAAAA
GGCTAACACAAATTAGTTTAGGTGGATTTTCTCATTGACCAaagcttttc
aaattttattaagCCCAGGGTCATAGGTCTGTTGTAGAATGGTGAGATTG
TCCAACCCCTGAATTAACGCCCCTTTCAATTAAGGGACTCAATTTCTACG
ATTCatgaatttgtaaaaaattacaACAGAATTTGGAGATCTTAAGGTTC
GCACATTTGAGATCTTAAGATTTTGCTTCAGGATTATAGCATCCCTTTCT
TCTATTAGATTTTTGGGTTTACCTATGGTTCAATTTGTCGTGTTCTTACC
AAGTCGTCAGCTACGATAATAACAAAGTTTGGTTTCTCTGCGCACAAAAT
TTGACCAACGAGGGAAGCTACCAAGAAAAATTGCCATAAAATTGCCTTCA
TTTTGTCATTTAACTATTTACCCTGTGTTAAGAGTTGTCTATTAAGATAA
ATCTCAATATTATGTGTGGAGATATTACAACAAATTTATACAGTTCACAA
GgttgaaactgaaaaaaattgttagCAATGAacgtaaaataaaaaacttg
ctCAAAAAGATCAAGATCATATGACAGAAAGTTGTTACAAGACTTTataa
ttaaaatgttttctcaCTAAGTTACATCGCACTCACATTGTATttatcta
aaaatttgaaatgcgtatcaaaatgacatatatgaaataaaactgaaaaa
ttgtcaaaaacgGTGAGAAATTATTTAAAGACAACATCATAACATGGGGA
GATTAGAAAAACCTTATGACAGTTAGAttttaattgtatttttggcAGTA
TCAAGTATGCATACATATCGATGATGTCATCTTGTATAAAAAATCAGTGT
GTCGAGCTTAGGAGCATGtcattgagtagaaaagtttgtgtgtctGTATC
TCTAAAATATGAGAAAGTACTCCGCCATCATACAGGCTTATTACAGGCTA
AAAGTTAGTTTTAAAGTATTAATCAATAGCACTTTTTATTACTCCGTTCT
ATCATGCACCAAATGTTCAACCCAAGGATTAGATCGTCTGTTTTTGTCAT
CATTATATATCTTTTAGGTATATGTAAGAGTAGGAATTGCgaagtcaaaa
ttttcaaaaaaggttccCACCGTCCAAAGGAGAGGAGAGTTTAAAGATAT
ACATTTAAAGAGAAAATGAATGACACACACTTCAATTACGTCACCAACAA
GTTGATTCTTGAGCATAATGTGTgttcttttgaaaatctaaCACCTTGCT
CTTGACAACCCTTCCTACAGTGAAGTGAAAGTGAATCGATTAAACTCTAA
ATAAACTCTTTACACATAAACTCTAAAAACTACACATAATTATAAGGAGT
AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctttgttat
gttttcaacagtaaacgaaagtgaatgaagacaaaatgtaaacaaaaaga
ttgcaaagaCGTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTAtgatccag
cactcctaaatactcctccgtatgggtgtttgtgccaatgctagatcagc
atttcataaatataccatgcgtcgttccctttaaAGTCTAAATTCAAAAA
TGCATCGATGGACGACGAAATGTAGCACAGTTTTTTAGTGGCTCTAGGTG
TTAGGTCTAGGACCCTACAAACCTTACGAATAACAATAATCCTTTTAAGA
ATCAATTTCTTGACTTTGGTTTTAAGGTAGAGTGATCCAAGGTACCCATA
CACCGTTATGGAGCTTTGGGTTTGCTCTGGGGTCCCCTGTCTCATTTCTT
CTTGGTGGAACTGCACTATCTTCATAAAattgtaatcttttcttcatcGT
TTCCAGAAGTTCAGGATATTTGCCTGACAAATCATGATATTCGCAAGGAT
CGTCGATGATGTTGAATAAACAGAAATTGGGTTTCTTAAAACACGTGCTC
GAAACATTGGCAGGTTTAGCACCACAGTTGACCACTAGTTGACTGTGGAA
TGTGATATAAGGGTCGTCAACCAGAATATTGTTTTCCATACCAATAACCC
CTGGCGGGGCATACCAACCGTCCCATGTACCAGCTAAAAAGGAAAGATAA
AGGAGATAATATTGTTTATCTAATTTTTAAAAGGCAAGAACAATAAACAT
TAATTGTTTCAACATTGATGATTGATTAAAATCGATTACAGTATATTAAA
ATAGCTttttagaagaaaaatattttcacattCAAAAATATACTTGAAAG
TAAAAGAATCTGACCGTCGGGGAAAATTGATTGACCACGTTATTATACAG
CGACACTTGTATATTTTGTAGTTAGTATCTAACGAAACACACAATATCAA
TAAGAATAGAAAACAATAATCTTATCCCACCTTTTCTTTTCGCTAAGGAC
ACTACCTTTTTTAATCTACAACTCAATAAAACTGATGCTGTATTGCTAGC
GTACAAAAGAAAgcatggaaaaaaaatcaaaaccatcaTACTTTCTTGTA
TAATTTTCCAATCACCCATTCGTAAAGCTCTATTTTTCCAGTCATGGTGA
TCAATATTCAGCAAAATCTCTTCTCTAGCAGAAGGTAGACCTTCAGATAA
ACAAGGCCATTGATCCACACCATCAAAGGGagcttttgaagatccacctg
CTAAATTGACCAGCGTTGGAACCCAATCGGTAATGTGTATTAAGTCCATG
GATGTTCGACCTGGCTTCTTTAACAAGTTACTATGAACAAATCCAGCCGC
TCGCACACCTccttaaaataataaaaagtcaAAGGTCCGTAAAATTTCGC
TGGTTTTCTGACTTCTTAAAAAATAGTTTATTCGTTCAAGATTCAATAGA
TGAAATTGCAAGTAATTTGAAAGTGGTTGAGTAGCTTAAAGGAGAGCTTT
TGATCTTATGAATTCGACTTAAGAATCATACAGCAACAGGTAAGACCTTC
TCCAAGATGtctgaaaatatcaaaacaacgTCTAGCTAACGCCTATAACG
CCCTTAAAACGTTAAATGGATGCTGAAACGAAGTTGGAATAGCGCTCGGG
CCGTACCTTCCCATAGCGTAGCCTTGACACCTCTTAAAGGGAAATTATTG
GCCCAGTTTGCGTCAAAACCATTAGCAGGACCTCCGTTATCTGTGGTGAA
AATGATGACTGTGTTATTGATCATGCCTGTCTTTACCAGAGCATCGTGGA
CCTGTGGCAAcgaaaaaacatgaaattttgttttaagaGGTTTGGCCGAT
ATAAAATTTGCGTAAATGGTTGAGCTTTGGACTGANttttatgttttgat
gatttcgacagacgattcgtgattcggataaaaatgttcgatcatcgttc
gacgaatatccttcgattttattaaggcaccatttacactagaataacta
gaatgaaaaaaagagcgatgcgcgggtggcggcgggtgttgtgccgccgt
ggattatgtggtgtgtttgggcattaaggctcttacgaacCTGTCtcata
gcggctttattagagggatttttagagtgtctcttattttgctaaNgatc
ggagtttttttgaaaatggtatcctaatggcggcactactcataTATGTA
GTTTTGAGTGCATCGAGAGCACTAGATCTACTTTTTGcaaagcgaattta
tgagcgaagaaGTTTTGCTATttgtgtgcacgtacctttaacttctatcc
caagcgaaaatttgctataaaatttgctatataaatcacatcttcaaacc
gatgattttatcaaaatgaccttgaatggtttggcttgaagccacgaaaa
ctttctcggtttggtagctaggactgcgaaagaagccgttttaaaatggt
gtaccctagcagtgaacagcaataAAGTTACCgcaagccgaaacacggac
ttagaatctgaagttgatcaaattgcgNacccttatacaatacggctagt
tctcgaatacttttgatgatgtagcgccgttagacgttaatttttaacat
tgcaatggcttcttctcgggaaccaattccaaaaaaaaaccaatcaaaga
tggcggatatagcttggtccatggatatataaaggtcagtgggtttCACT
CTGTAATAAGCTATATATTGGTCAGGTACATgagtaaatttatggtaaat
aTTGTTTTGTTCGGAAGTATGGTTGAGTTGCTAAATAGCAAGGAAATTTA
GATGGCAGTAAAATTCAGCATAATATAAGCATTGNtaagcaatctaagca
gtggttcttcggttttaaatgtttattttgctgttaaatggaaaaaaatt
agtttgaacggtgacagaaaggatctttatcatcccttgacttttaacag
caagtatcaagtataaAAAACCTCTCCTCAATGaggagaggtttttgcaa
gtcgcgcgggcggaaggagtgctcttttagNTAACCCATCATAGCTGCAA
ATTTTCTACGTCCTTCGTGCTGAATGTAATTATACTTTCGTATCCATGAA
TCGGGGGCTTGCAGTGCATCTGCGTCCCTATTAGCACTGTGAACCGCTTG
ATATGCGAGGTATAAGAAGAGTGGTTTCGATTGGTCATGATTGTGTATAC
GACCTTCTGCTTCAGCTGTGTACATCTCCGTACTGTAGTTACCCCATTGT
GTGTATACCGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009181-exon-sc0000091-1491911889:35342..35492 | TCONS_00009181-exon-sc0000091-1491911889:35342..35492 | Clytia hemisphaerica | exon |
| TCONS_00009181-exon-sc0000091-1510915933:35342..35492 | TCONS_00009181-exon-sc0000091-1510915933:35342..35492 | Clytia hemisphaerica | exon |
| TCONS_00009181-exon-sc0000091-1575043694:35342..35492 | TCONS_00009181-exon-sc0000091-1575043694:35342..35492 | Clytia hemisphaerica | exon |
| TCONS_00009181-exon-sc0000091-1491911889:41951..42053 | TCONS_00009181-exon-sc0000091-1491911889:41951..42053 | Clytia hemisphaerica | exon |
| TCONS_00009181-exon-sc0000091-1510915933:41951..42053 | TCONS_00009181-exon-sc0000091-1510915933:41951..42053 | Clytia hemisphaerica | exon |
| TCONS_00009181-exon-sc0000091-1575043694:41951..42053 | TCONS_00009181-exon-sc0000091-1575043694:41951..42053 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000091 | supercontig | sc0000091:35342..42053 + |
Blast
The following BLAST results are available for this feature:
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