TCONS_00009271 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00009271
Unique Name	TCONS_00009271
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	813

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000091:203528..207813-
coding sequence from alignment at sc0000091:203528..207813-

transcript sequence

>TCONS_00009271 ID=TCONS_00009271|Name=TCONS_00009271|organism=Clytia hemisphaerica|type=transcript|length=813bp
ttcagaatatGATATAAAAATTagacaaaataataaaattcaaagCATGT
TACGTGCTTCAAAGAATATTAGCAAATGGTTGCCGACGATCAACCGACCA
TTATGCGGATGTACAACCAGaaatgtaAAAAAGTCATCAGTTCGTTTGTC
TTCAACCCAAACTAACCTGGAGAAAGAAATAGaggCGTATTATGAGGaca
aagtaaaaaagtttggTTACTCCGTCCTCGAGGTGACTGATATAGGAGAT
TACAACGCGACGGGGGTTTGGTTGAAACATGATCAAACAGGTGCCGAACA
TTTACATATCGAACGAGATGatcaaaataatgttttcagCGTATCATTCC
GCACCACTCCGTTCGACGACACTGGAGTGTCGCACATTCTCGAACACACT
GTATTGTGTGGTTCCGATAAATACCCTGTCCGTGACCCCTTCTTCAAAAT
GTTGAACCGATCACTCTCCACATTCATGAACGCTATGACGGCGAGCGATT
GGACGATGTATCCTTTCTCTACGCAAAACGAAAAAGATTATTACAATTTG
ATGTCCGTCTACCTTGATGCTGCTTTTTTCCCACATATCAACGAACTCGA
TTTCAGGCAAGAAGGTTGGAGATTGGAACATAGCGATTTGACTGACCCCT
CCTCGGATATCATTTTCAAAGGTGTCGttttcaatgaaatgaaaggagct
cTGTCGAATTCCGAATCATTGTTCCACGAATACAATCAGAGAACGTTATT
ACCGGACCATACGTATGGTTACTGTAGCGGTGGTGATCCTTTACACATCC
CACATTTGACTGT

Run BLAST on NCBI

protein sequence of TCONS_00009271-protein

>TCONS_00009271-protein ID=TCONS_00009271-protein|Name=TCONS_00009271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
SEYDIKIRQNNKIQSMLRASKNISKWLPTINRPLCGCTTRNVKKSSVRLS
STQTNLEKEIEAYYEDKVKKFGYSVLEVTDIGDYNATGVWLKHDQTGAEH
LHIERDDQNNVFSVSFRTTPFDDTGVSHILEHTVLCGSDKYPVRDPFFKM
LNRSLSTFMNAMTASDWTMYPFSTQNEKDYYNLMSVYLDAAFFPHINELD
FRQEGWRLEHSDLTDPSSDIIFKGVVFNEMKGALSNSESLFHEYNQRTLL
PDHTYGYCSGGDPLHIPHLT

Run BLAST on NCBI

transcript from alignment at sc0000091:203528..207813-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00009271 ID=TCONS_00009271|Name=TCONS_00009271|organism=Clytia hemisphaerica|type=transcript|length=4286bp|location=Sequence derived from alignment at sc0000091:203528..207813- (Clytia hemisphaerica)
TTCAGAATATGATATAAAAATTAGACAAAATAATAAAATTCAAAGCATGT
TACGTGCTTCAAAGAATATTAGCAAATGGTTGCCGACGATCAACCGACCA
TTATGCGGATGTACAACCAGGTACTGTTATTATATTTTTGAAAATGATGT
TAGCAAAACAATCATACTTTTGTTTTTGTATAACTGAATTAACGAGAAGA
TTTTCCGAAGTGGAACTAAATATGAATGTACCATACACCTTTTCAACCGT
AGTCGCGCGGTCAGGTGCGTGCCACTTAATTATTTAACTATCCCCCTAAA
CTTGATTCAATCCTTTTTGACACCTTTTTCTATTGTCTATAGGTGCGAAA
AAAGTCTGGGATGGTTTTAGGGTGGTAAAGCGGCCAAAAAAATGCCCGCG
TGGCAATTGGCGACTACGGTCGAAAAGGTGTATTACGTCAAAATGTATCC
TCTGTTTTTGCGGATTTATCTCAGGCTATTATTGAATTTTACTTTCCATT
TTTTCAGAAATGTAAAAAAGTCATCAGTTCGTTTGTCTTCAACCCAAACT
AACCTGGAGAAAGAAATAGGTAAATTTGTTTATTGAGACAGACCTATAGC
CTATTACAACCATACCTCTGTCGTTTGTATGCATCTTATTAGTGTCCAAT
TGACCAAGCCCGGAGAGAAATGATTTTATTTATTTTTCTTTCAGAGGCGT
ATTATGAGGACAAAGTAAAAAAGTTTGGTTACTCCGTCCTCGAGGTATGA
TGATATTCTTGAATAAATTATTTCGCTTTTTAAAAAAGTTTAAAATTAAG
CGTTTAACTAAGGCTTCACCCTCCCCAGCAAGATGAAATGCTCGACTTAA
GGGGGTAAAAAGTTATTCTAAAACTTCCAGGGGGCAAAAGAGTGATTTCG
TCCACCCTCACTTTAAGGTATGAAAAGAATTTTTTTAAGGGTATTGTTGC
AGCATAGTATAAGAAAGCCGTGGCTGGAATAGGTACCGCATTGTCTTTTC
AGTTAATTGCTGTTCCATCTCTGTCTCCGAGCTTTATAAGAACATCAAGA
TGCTCATTTTATTATTGGTAGATCGTTTTTGAAATTTCGCTCTTATTTTC
CTTCACATTTTCCTTTTTTTGCTAGATATCTTTGAATCTGTACCCAATAG
AACACTTGAACTAGTTTTGGACATATTTTAGGTATTTTGTGGAAACAATA
GTTTTTCGCCAAAATTGAAATTATAAGAACTATATTCAAGATGACAACTT
TCCTGTCAGTTTGAATGATAAATTTTGAAGGTGCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGAATGATAAATTTTGAAGGTGCTGGCTTGAAATTT
TCACAGTATTATCTTGATGTACTTTTTCATTGATTTCTAAAATAATTTCA
CTGAAATATTGTGAAGGTATTCGAGGCACTTTTTTAATTTTTGAATTCTT
TCAGCCCAGTCATTTTGTGCTTGTTTAAATTTCCTATTGTTAATCTTTCC
TTTACAATGATTTTATAATGCAAGTGTATTATCAAGGGCATATCATTAAT
GTCTAAAACGCACTGAGAAGTGAGTATTAATGACAAACCAATNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATTTCTTGATCAACA
AATAGTCATCAAATATGACAGAGATAGAACAACAGAAATTCAGATGTTAT
CATTCCAGCCGCGGCTTTCTTATACTATGATTGCAGATTGTTGCAAATTT
TGCCATTTTCCAGGGGGTATCCACACATTTTCAATAATTTCTTTTTGACT
TAAAAAGGTTTATCCACCCCACATGTATGGTCTTTTAATGGGACAGCCCA
TTACACAGTCCAGTCCACTACGTTGCATTACAGTCACTACTTATTCTTAG
CGACTCAGACGGGAAGGCAAGTTTTCATACCATAACGAGCTCAATCGAAA
CGGTAAACATCTTCATGGCTAAATCTTATGAAAAAAATGAAATAAATGAT
ATGAACCCTCTAAATATATTTCAATCTATTTTTCTTCTGGATAAGGTGAC
TGATATAGGAGATTACAACGCGACGGGGGTTTGGTTGAAACATGATCAAA
CAGGTGCCGAACATTTACATATCGAACGAGATGATCAAAATAATGTTTTC
AGGTGATTCACTTTTCACTGTCAACTCTCTCTTATTCATTCTCTCTGTCA
TTCGAACTTCAAAAAACCTTAGCCAACGCACAGACCTTGCAAGCTCGATC
TGTACTCTGTCTGTGGTCAATATTCCCTCGTATTGACCTGAGAGAAGAGA
AGAGAGAAGCTGACCCTCCGATATCATCGGACCGGGCCCTATCCCGACAT
CAGAGCCGTGCTGTATCGATGATGATATTCGCACAGTACGGGAGAACCTT
GCGTTCTCGCAGGTACTGAACATATGAGTACCATCACCACACCACATTCA
ATGTCCAGCATATCTCCCCATACTCTTGTATCAGATTGATGGTACACCTA
TTCCCCTCACATGGTATGGGTTGACCCAGGCCAAGGTACATTCACTTGCC
AAAGGAATCGCACCGAGTGGGAATCGAACCCTTACCTTCAGCACGGAAGT
CAAGAACGATGACCACTACACTACTGCGCCCGTTTTGACCTTCAGAACAG
TTAATATTGTATAATATCACTCACATAAATACTCAGTATAGAGGTTGTGT
CAAACCACATACCGAGATAATGTTTTTACACCTTTTATTATAGCGTATCA
TTCCGCACCACTCCGTTCGACGACACTGGAGTGTCGCACATTCTCGAACA
CACTGTATTGTGTGGTTCCGATAAATACCCTGTCCGTGACCCCTTCTTCA
AAATGTTGAACCGATCACTCTCCACATTCATGAACGCTATGACGGGTAAA
TTTTATTTCTATCGATTTTAAAAATGATCAAAGTTGAAGTGAGTCTTTCT
TCACTTTCTGTCAGATCTCTGCTGAAATCTTAGCCATTTTTCCCTGATAT
GGTATTTTAAGGAAAAACGGATCAATATAATAGGAAGAAATATCTATCTT
TCCCAAACTAAATGTTTGACCTAGATGTTTGCTTCATTGTTGTTTCTAAC
GTACGAAAACGAAAGATAAAATTTTACGGAGTCTGAAGATTTAATACGAT
TTTTAATAACCACAGTCGTACAAATATTTTGCTAATTTTTTACACAGCGA
GCGATTGGACGATGTATCCTTTCTCTACGCAAAACGAAAAAGATTATTAC
AATTTGATGTCCGTCTACCTTGATGCTGCTTTTTTCCCACATATCAACGA
ACTCGATTTCAGGTATTTATCGATTGTCCCTCCAATACCGCCTTTCTTTT
TTAGGGAGATCTTGTACTGAATGCAAGCCCTATAATCAAGGCAAATGCCT
ACCGTTTGCGATAAGATTGAGAAAAAAAATTAGTTTGTTAGCTGTTTCGG
GTCAACTCTTTCGGTCTCAGGCAATACCTTTTAATCCTTTCCAGTGCAAT
GATGACGAAACTTGAGTCTAACCTAAATACAATTTTTGACTATTGGATGT
TCGTTATATTNAGGTAATACCTTTTAATCCTTTCCAGAGCAATGATGGCG
AAACTTGACTATTGGATGTTCGTTATATCGTTTCCATTGTGATTATATTG
ATTTGAATGGAAAGCATCATAAGTGAAATTCATGAAAAACTCTTTCCCTT
TACAGGCAAGAAGGTTGGAGATTGGAACATAGCGATTTGACTGACCCCTC
CTCGGATATCATTTTCAAAGGTGTCGTTTTCAATGAAATGAAAGGAGCTC
TGGTAAGAAGGGTTTTATTTATGTATGAAAAGCTTGGTATCTCCATAGGC
ATAAATCCAGACATTTCCTAGAAATCTTCGGGTATTCTACTCAAAGTTAA
CGTTAATTCGAATTAGAGAGCGTCAACTATTATAGTATCTTAAAAACGTA
AGTATTAGAAAAATGTCTTTTTTCAGTCGAATTCCGAATCATTGTTCCAC
GAATACAATCAGAGAACGTTATTACCGGACCATACGTATGGTTACTGTAG
CGGTGGTGATCCTTTACACATCCCACATTTGACTGT

Coding sequence (CDS) from alignment at sc0000091:203528..207813-

>TCONS_00009271 ID=TCONS_00009271|Name=TCONS_00009271|organism=Clytia hemisphaerica|type=CDS|length=810bp|location=Sequence derived from alignment at sc0000091:203528..207813- (Clytia hemisphaerica)
TCAGAATATGATATAAAAATTAGACAAAATAATAAAATTCAAAGCATGTT
ACGTGCTTCAAAGAATATTAGCAAATGGTTGCCGACGATCAACCGACCAT
TATGCGGATGTACAACCAGAAATGTAAAAAAGTCATCAGTTCGTTTGTCT
TCAACCCAAACTAACCTGGAGAAAGAAATAGAGGCGTATTATGAGGACAA
AGTAAAAAAGTTTGGTTACTCCGTCCTCGAGGTGACTGATATAGGAGATT
ACAACGCGACGGGGGTTTGGTTGAAACATGATCAAACAGGTGCCGAACAT
TTACATATCGAACGAGATGATCAAAATAATGTTTTCAGCGTATCATTCCG
CACCACTCCGTTCGACGACACTGGAGTGTCGCACATTCTCGAACACACTG
TATTGTGTGGTTCCGATAAATACCCTGTCCGTGACCCCTTCTTCAAAATG
TTGAACCGATCACTCTCCACATTCATGAACGCTATGACGGCGAGCGATTG
GACGATGTATCCTTTCTCTACGCAAAACGAAAAAGATTATTACAATTTGA
TGTCCGTCTACCTTGATGCTGCTTTTTTCCCACATATCAACGAACTCGAT
TTCAGGCAAGAAGGTTGGAGATTGGAACATAGCGATTTGACTGACCCCTC
CTCGGATATCATTTTCAAAGGTGTCGTTTTCAATGAAATGAAAGGAGCTC
TGTCGAATTCCGAATCATTGTTCCACGAATACAATCAGAGAACGTTATTA
CCGGACCATACGTATGGTTACTGTAGCGGTGGTGATCCTTTACACATCCC
ACATTTGACT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005185	XLOC_005185	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00009271-protein	TCONS_00009271-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000091	supercontig	sc0000091:203528..207813 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
48.87	48.0569	38.1745	35.9164	20.1989	14.96	20.163	22.3406	13.4633	17.964	12.4375	11.8922	11.9538	14.2398	12.1073	20.1158	36.2456	32.9022	5.43226	8.88607	13.5731	16.2881	30.6433	31.7778	23.0185	23.5265	8.45685	7.56413	22.6877	23.1152

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR011765	Pept_M16_N
IPR011249	Metalloenz_LuxS/M16

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0003824	catalytic activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0046872	metal ion binding

Blast

[Close]

BLAST of TCONS_00009271 vs. Swiss-Prot (Human)
Match: PREP (Presequence protease, mitochondrial OS=Homo sapiens GN=PITRM1 PE=1 SV=3)

HSP 1 Score: 288.886 bits (738), Expect = 1.681e-89
Identity = 136/214 (63.55%), Postives = 165/214 (77.10%), Query Frame = 2

Query:  170 EKEIEAYYEDKVKKFGYSVLEVTDIGDYNATGVWLKHDQTGAEHLHIERDDQNNVFSVSFRTTPFDDTGVSHILEHTVLCGSDKYPVRDPFFKMLNRSLSTFMNAMTASDWTMYPFSTQNEKDYYNLMSVYLDAAFFPHINELDFRQEGWRLEHSDLTDPSSDIIFKGVVFNEMKGALSNSESLFHEYNQRTLLPDHTYGYCSGGDPLHIPHLT 811
            E+ ++    DK+   G++V +VT + +   T V L HD TGA +LH+ R+D NN+FSV FRTTP D TGV HILEHTVLCGS KYP RDPFFKMLNRSLSTFMNA TASD+T+YPFSTQN KD+ NL+SVYLDA FFP + ELDF QEGWRLEH + +DP + ++FKGVVFNEMKGA +++E +F ++ Q  LLPDHTY   SGGDPL IP LT
Sbjct:   35 ERALQYKLGDKIH--GFTVNQVTSVPELFLTAVKLTHDDTGARYLHLAREDTNNLFSVQFRTTPMDSTGVPHILEHTVLCGSQKYPCRDPFFKMLNRSLSTFMNAFTASDYTLYPFSTQNPKDFQNLLSVYLDATFFPCLRELDFWQEGWRLEHENPSDPQTPLVFKGVVFNEMKGAFTDNERIFSQHLQNRLLPDHTYSVVSGGDPLCIPELT 246

The following BLAST results are available for this feature:

BLAST of TCONS_00009271 vs. Swiss-Prot (Human)

BLAST of TCONS_00009271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PREP	1.681e-89	63.55	Presequence protease, mitochondrial OS=Homo sapien...	[more]

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TCONS_00009271 (transcript) - C. hemisphaerica