TCONS_00009281 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009281
Unique NameTCONS_00009281
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2808

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009281 ID=TCONS_00009281|Name=TCONS_00009281|organism=Clytia hemisphaerica|type=transcript|length=2808bp
TGATTATGATATGATTTAGGAGATAATATTATCCTGCAACCTGAGAAAAA
AACAGTTGGGAGTTAGCTTTACTAACTAACTTTAACTAATATGTCAAAAT
ATTGGCTAAACACttatcttgtttttattttagagcAACAATATCAAATA
TGGGGAAAGTATTATGCAAAGAGCATTTGCCTCTGGGGGTGTACAAGGAC
ATGTCATTGGTATTGATCTGGGTACCACAAACTCTTGTGTTTCCATAATG
GAAGGGTCTACTCCAAAAGTTATTGAAAATGCAGAGGGTGTACGAACAAC
ACCATCCGTCGTTGCCTTCACACCTGAAGGTGAAAGACTTGTCGGTGCTC
CCGCTAGACGACAGGCTGTTACCAATTCTGAAAATACATTGTATGCTACA
AAACGATACATTGGAAGAAGGTTTGATGATGCTGAAGTCCAAAAAGATAT
tAAAAATGTCCCATACAAACTTGTCAAAGCTTCAAATGGAGATGTCTGGT
TTGAAGCCCAAGGAAAATTATATTCACCAAGTCAAGTTGGAGCTTTCACC
ctcatgaaaatgaaagaaactgcAGAAAGTTATCTTGGAACCAGTGTTAA
GAATGCTGTTGTTACTGTCCCTGCCTATTTCAATGATTCCCAAAGACAGG
CTACCAAAGATGCTGGCAAGATTTCAGGATTGAATGTTTTGCGTGTAATC
AATGAGCCAACTGCTGCTGCTCTTGCTTTTGGGCTAGAGAAGAGTGATGA
TAAAATTATTGCTGTTTACGATTTGGGAGGTGGTACCTTTGATATCtcag
ttcttgaaatccaaaaGGGTGTATTTGAAGTAAAGTCAACAAATGGCGAC
ACCTACCTTGGTGGTGAAGATTTCGATATGGTCTTGTTGGAACATCTTTG
TCAAGAATTCAAAAAAGATACTGGTATCGATATCAAGAAAGATAACATGG
CTCTCCAAAGATTACGTGAAGCAGCTGAGAAAGCTAAATGTGAATTATCA
TCTGCTCAACAAACTGACATCAACTTGCCTTACCTAACCATGGATGCTAC
TGGACCAAAACACATGAATATGAAATTAACACGATctaaatttgaacaaa
ttgttGGATCCCTCATTCAACGTACTATTGAACCATGTAAGAAGGCTGTT
AAAGATGCTGGTGTTTCCACTGGTGAGATTGGAGAAGTTTTACTTGTTGG
TGGTATGACCAGAATGCCCAAGGTACAAGACACAGTTCAAGAAATCTTTG
GCCGTAAACCCTCTAAAGCTGTAAATCCAGATGAAGCAGTTGCAATCGGA
GCAGCTATTCAAGGAGGTGTTTTAGCTGGTGAAGTCAAAGATATTCTTTT
GTTGGATGTTACCCCATTATCTCTTGGTATTGAAACTCTCGGAGGAGTCA
TGACCAAATTAATTAACAGAAACACTACTATCCCAACCAAAAAGAGTCAA
GTTTTCTCAACTGCTGCTGATGGCCAAACACAAGTAGAAATTAAAGTACA
TCAAGGAGAGCGTGAAATGGCAGCTAATAATAAAATGTTAGGACAATTTT
CTTTAGTCGGTATTCCACCAGCACCAAGAGGTGTTCCTCAAGTTGAAGTT
ACTTTTGATATTGATGCTAATGGTATTGTGAATGTATCTGCACGTGATAA
GGGAACTGGCAAAGAACAACAAatTGTCATCCAATCTAGCGGTGGTTTGA
GCAAAGATGATATTGAAAACATGGTCCATGAAGCTGAGAAATTCGCCGAA
GAAGACAAGAAGAAGAAGGATATCATTGAAACCATTAACCAAGCTGAGGG
TGCTATCCATGACATCGAAAGTAAAATGGAAGAATTCAAAGACCAATTAC
CCGCTGAAGAGGTCGAGGAATTGAAAAAAGAAGTCGAAACCGTTCGCGAA
AAATTAAACAATAAAGACAATATCGAATCTGCAGAAGAATTACGAGAAGC
ATTCCAACAATTGCAACAACGTTCACTCAAACTTTTCGAAATCGCATACA
AAAAGATGGCTGCTGATCGCGAGGGTTCATCCTCGTCAGgagaacaacaa
caacaataaatcaaaatgtgagaagaaaaacgaaaatgttttaaaaacac
ttcttcAGTTGTTATTCTTCAAGAACACTCACATCACATAGGCAGGCCCG
TGTTATTTATGGATGGGAACGTGAAGAGAGCCTCAAATTTTGCTTTCTGG
TTGGAACGATTGTCCAAGTTTAAAGATGAACGTTGGAAAGAAAGAAACAG
TTTAACTTGTTGACAAAAATGAAAGACCTGAACTGTCGAAATTTTCGTTG
ATTCTGACCCGCTTTGCTTCCAGTCTGGGTTGTATAGCAATTCATTCCCA
CGCCTTCGAATTCACCATATAGTAAGGGAAATATCAGGATCAGCCTCGAC
CATGGCTCGACGTTGGTCTTTTTTTCGCCCTTTTTCCACGCTCAATCGAC
ACTGGTGTATAATGATCCGTGACAACCTCTACCACACTATGCCAACCCAC
CTGGATACTAAGCGGGTTCGAAAAAGCAAAATCCGAGAGGAAAgtgaatt
gtttttttaaattagataattatttttattttttcgctcgAACGTGTAAT
ATACAAATCGATTTtcagaatatactttataagtaCGTTTATAATGCTTC
ACAAATTATGCAAGACTAAAATCATCCGACTCTTTTTACCATCGCActtg
tttttttcgaaatatttagacgtttttttataaaccaGTAATCTTCTGGA
GATTCTTGAAATCACTGTAGaccttgttttcaaaatatttctgctGAGAT
ATCTCAAC
Run BLAST on NCBI

protein sequence of TCONS_00009281-protein

>TCONS_00009281-protein ID=TCONS_00009281-protein|Name=TCONS_00009281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=631bp
MQRAFASGGVQGHVIGIDLGTTNSCVSIMEGSTPKVIENAEGVRTTPSVV
AFTPEGERLVGAPARRQAVTNSENTLYATKRYIGRRFDDAEVQKDIKNVP
YKLVKASNGDVWFEAQGKLYSPSQVGAFTLMKMKETAESYLGTSVKNAVV
TVPAYFNDSQRQATKDAGKISGLNVLRVINEPTAAALAFGLEKSDDKIIA
VYDLGGGTFDISVLEIQKGVFEVKSTNGDTYLGGEDFDMVLLEHLCQEFK
KDTGIDIKKDNMALQRLREAAEKAKCELSSAQQTDINLPYLTMDATGPKH
MNMKLTRSKFEQIVGSLIQRTIEPCKKAVKDAGVSTGEIGEVLLVGGMTR
MPKVQDTVQEIFGRKPSKAVNPDEAVAIGAAIQGGVLAGEVKDILLLDVT
PLSLGIETLGGVMTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVHQGER
EMAANNKMLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDKGTGK
EQQIVIQSSGGLSKDDIENMVHEAEKFAEEDKKKKDIIETINQAEGAIHD
IESKMEEFKDQLPAEEVEELKKEVETVREKLNNKDNIESAEELREAFQQL
QQRSLKLFEIAYKKMAADREGSSSSGEQQQQ
Run BLAST on NCBI

transcript from alignment at sc0000091:274501..282700-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009281 ID=TCONS_00009281|Name=TCONS_00009281|organism=Clytia hemisphaerica|type=transcript|length=8200bp|location=Sequence derived from alignment at sc0000091:274501..282700- (Clytia hemisphaerica)
TGATTATGATATGATTTAGGAGATAATATTATCCTGCAACCTGAGAAAAA
AACAGTTGGGAGTTAGCTTTACTAACTAACTTTAACTAATATGTCAAAAT
ATTGGCTAAACACTTATCTTGTTTTTATTTTAGAGCAACAATATCAAATA
TGGGGAAAGTATTATGCAAAGAGCATTTGCGTAAGTCCAGTTTTCAATTT
GATTTAAAATATTTTCCTTTTTTGAGGAAATTAACTATTGTATATTCATC
TTTTTGCTTACACAACTGGTCTCTAGGCACACTTTTCTTGAGTGAATATC
TTATATAAGTTTACTTTTAGGACTTTTTTTGATTTTGAATTTGAAGAAGG
TGTACTACTTTGGCAAGCATGCTCAGGGAAAAAAATCTAAAGAGAAGATT
TACTTAAATTTTCCTTGTTGATGATAACATGGATTACATTTAGGGTAGAA
ATTATGTTAAAGTTCATCAATTGGTTTGGGTAATGCATGGGAAACTTGAA
TTTTCTATTTAAAATATACCTCATTGGAACTATTTTTCGTGGGAATTAAT
TTTAGCGGTTTTTGCAGGGGGGGTCGTGCAGTTACTATGTGAACACTATG
ACACTACGTGGTGGTGTAACAACTAAAAAATTTTAAAACAGTTACTCCAA
AGTGGAGTAAGTGCATATATTTTCACTTTTTTGAAAAATTTCCCTAAATT
TTCGTCAAAGATTTGAAATTTATGAAGAAAAATTGAATTGTTTTTGGAAA
AATATCTGAAATTTTTTGTCATATTTATGAAAATAGAAATCGTGGAATGC
TTTGATAGTGACTTAAACCAAGTATATAAACTTATTCCAACAATTCTAGA
ATACAAAAATATCAAAATGCTTCTTTATAAGCAATTCTTTTGTGTCCTTT
TCTGCCTATTTTTCTAACGGAATCCAAACTGATACTTATGAATGATCGCT
TAAATATAAGCAAACAAAAGGAAATCACTAGTAGAGAAAGAGATCTTAAA
GTAAAAAACACATTATATAAAAGACTTGTCTTTCTTGACTTAAATCACTG
GTACTCAGCAAAATTCATTTTCCTGCATGAATCATTAAGTCCCTGCAGAG
GCTTAACTTTGGGCACATTTCCCAGCAANCAAAATTCATTTTCCTGCATG
AATCATTAAGTCCCTGCAGAGGCTTGACTTTGGGCACATTTCCCAGCAGC
AGTTACTTACTAGTTTAGCTTTATTATAAAAAAATCTTCATTATGCAAGC
ATTATATTTTCAGCTCTGGGGGTGTACAAGGACATGTCATTGGTATTGAT
CTGGGTACCACAAACTCTTGTGTTTCCATAATGGAAGGGTCTACTCCAAA
AGTTATTGAAAATGCAGAGGGTGTACGAACAACACCATCCGTCGTTGCCT
TCACACCTGAAGGTGAAAGACTTGTCGGTGCTCCCGCTAGACGACAGGTA
GGTTGAGTTTAAATCGTGTTTATCCATTCGGTTTTTTTAATTTTTTTTTA
CAATTCCATTCTTTTTTCAAATGTTTTGAGTAATGAAAGAAAAAAAAATA
GGAAGAGAAAAGCGAAAACAAAGAGAAAAAGAGAGACACAAATGGAGAGT
AAAAGTTTGTTGATATTGTTCAAGTTCACCATAAACCAGCTATCACATTT
TATCTCGTGCAGGTGAGAAAATATATTGAACTTTCTACGGTGTGATAACT
ATTACTTATTTTTATAGGCTGTTACCAATTCTGAAAATACATTGTATGCT
ACAAAACGATACATTGGAAGAAGGTTTGATGATGCTGAAGTCCAAAAAGA
TATGTAAGTGACTTATGTTTTAGTCAGATTAGTTAGTGTGACCTTTATTT
ACAGATCTGACCTTGTCAGACATTGTAGGCTTCTCTTGATGTGAACATGT
TAATATTTAAATTTGAATCAATTGATTTATTGCAAAATATTTTTTCACAG
TAAAAATGTCCCATACAAACTTGTCAAAGCTTCAAATGGAGATGTCTGGT
TTGAAGCCCAAGGAAAATTATATTCACCAAGTCAAGTTGGAGCTTTCACC
CTCATGAAAATGAAAGAAACTGCAGGTCAGAATCACCTCATTTTTCATTG
ATTTTTATAACATAAATACAGTATGAATATAAAATTCTTATTTGGAGGCA
AATATATATTTCTGGTGGTTGATTATCTGAACAATATAGGGATATACTGG
GTGCGCCACAAAAAAGTTTAACATTTTTATTCAATTGGACATAAATTTTG
ATCTAATGAATCGAATTTAATAAATGACCCATCGAGATTTAAGTCTATCT
TTCTTCTTTCCAATGAAATAGGAATGGTTATTTTAAAATTTTTAGATTTC
AAGAAAATTAGTTTCAAAGAGAGAAACTTTTTTGTGGCGCACCCGGTAGA
ATGATTTAGCTGGATGGCAGACAGCAGCCCAATTTCTCAAAAACTATAGA
CAAATGGATTTTTCTTTGACAGTGGTAATGGGAACAAATTTTCTTATGCG
ATTAAAACTTCTGTAAGACAATCCCTGCTTAAGCAATCTTTGTCAAAAAT
GTTGCATTTTATCTTTAGAAAGTTATCTTGGAACCAGTGTTAAGAATGCT
GTTGTTACTGTCCCTGCCTATTTCAATGATTCCCAAAGACAGGTAAGTTC
TTCATGTTAGTTTAAGTGTGATCATGAAATGATTCGATTATGATTCAATT
TTATGGCTATTGAATTTTATTATCTTAAATATTGTTATCTTTGCAAGCAC
AAAATTTGTTTTTTTAATGAAAGATCAAATGTTTTNTCTGACCTTGTCAG
ACATTGTAGGCTTCTCTTGATGTGAACATGTTAATATTTAAATTTGAATC
AATTGATTTATTGCAAAATATTTTTTCACAGTAAAAATGTCCCATACAAA
CTTGTCAAAGCTTCAAATGGAGATGTCTGGTTTGAAGCCCAAGGAAAATT
ATATTCACCAAGTCAAGTTGGAGCTTTCACCCTCATGAAAATGAAAGAAA
CTGCAGGTCAGAATCACCTCATTTTTCATTGATTTTTATAACATAAATAC
AGTATGAATATAAAATTCTTATTTGGAGGCAAATATATATTTCTGGTGGT
TGATTATCTGAACAATATAGGGATATACTGGGTGCGCCACAAAAAAGTTT
AACATTTTTATTCAATTGGACATAAATTTTGATCTAATGAATCGAATTTA
ATAAATGACCCATCGAGATTTAAGTCTATCTTTCTTCTTTCCAATGAAAT
AGGAATGGTTATTTTAAAATTTTTAGATTTCAAGAAAATTAGTTTCAAAG
AGAGAAACTTTTTTGTGGCGCACCCGGTAGAATGATTTAGCTGGATGGCA
GACAGCAGCCCAATTTCTCAAAAACTATAGACAAATGGATTTTTCTTTGA
CAGTGGTAATGGGAACAAATTTTCTTATGCGATTAAAACTTCTGTAAGAC
AATCCCTGCTTAAGCAATCTTTGTCAAAAATGTTGCATTTTATCTTTAGA
AAGTTATCTTGGAACCAGTGTTAAGAATGCTGTTGTTACTGTCCCTGCCT
ATTTCAATGATTCCCAAAGACAGGTAAGTTCTTCATGTTAGTTTAAGTGT
GATCATGAAATGATTCGATTATGATTCAATTTTATGGCTATTGAATTTTA
TTATCTTAAATATTGTTATCTTTGCAAGCACAAAATTTGTTTTTTTAATG
AAAGATCAAATGTTTTATGTTTTATCCTTTAGGCTACCAAAGATGCTGGC
AAGATTTCAGGATTGAATGTTTTGCGTGTAATCAATGAGCCAACTGCTGC
TGCTCTTGCTTTTGGGCTAGAGAAGAGTGATGATAAAATGTAAATTATTC
TTTGTAATATCTCAGCTCTTTCTAACCAATATTGCTTATCAGAACTTAAA
TTCCTCCTGAAATATTTTACTTCTCTTTAGTATAAAGAACTACTGTGCTC
AGACTAACACTTAATTTTCTTATTGTTTAGTATTGCTGTTTACGATTTGG
GAGGTGGTACCTTTGATATCTCAGTTCTTGAAATCCAAAAGGGTGTATTT
GAAGTAAAGTCAACAAATGGCGACACCTACCTTGGTGGTGAAGATTTCGA
TATGGTCTTGTTGGAACATCTTTGTCAAGAATTCAAAAAAGATGTAAGTA
ATGATAGTTCTCTACACTAAATATATCATACTGTGTCCGATTTCAGATTT
GGCCAGGTAGCTCAGTTGGCAGAACATATGCCTTGTCTCCAACACTGCCG
ATTCAGTGAATAAGTAGCTTAGATTGACAAATATGATCTCAGTGATTAGA
AACAGGCAGAACATTCAGCATGATCTTAGCACATAATAGAAAAGAAAAGG
GAATTTACTCCCTAATTCTCTCAGTCAACAGCCACCAGCTGTCTTGATTG
TTATTTTGAGATTTTTGCAAGTCTTGGCTATTTACAATTACATTCTTTGG
CCTAAATCCCTAAGAAGCTCGATTTGCTTGAGTAAATTCTTGCAAATTGC
AAAGATTTGCTGATTTCGTTGGAGAATCGAACAAGTGAAGTTTGAGCAAT
TCCTTAGACTAGAGTCTACATTTGGCTGAACTTTGCTTTCTGATAAACTT
TTATGACGCTGAGTCCAGTGAAGTAGACTAGGAGCGTTTGGCTAGGTTGC
CATTTTGAGAGAAAATGCTAAAATAAATCCAAATAGCAATAAAACTAGGT
AAAACTTGAACAGGTATCTCATTTGGCAGATAATTTGCCTTGTCCCGATT
AGGTGAATAAGTAGCTTAGATTGACAAATCTGATCTCGGTGATTAGCTGG
TAGTGGAATTCAGGTCAGCATTTGATCTTAGCACACAATAGAAAAGGAAA
GAGAATTGACTCCCTTATTCCCTCTGTTAGAGCCACCAGATGTGTCTGGA
CTGATTTTTGGGATTCTTGCAATTCTTCGCCATATAAAGTTAGTCCTTGC
AAAAATTAAGATCCAAATTTGGCCAAATCCCAAAGAAGCTTAATTTGCTT
GAGTAAATTCTTGCAAAATGCAGAAGCTCCAAAGATTTTCTTGTCGCAAA
AGTGCTTCACTTAAAGTGCAACTTTTAGAATTCATTTCCTAGAAAAAGTA
TTCCTTCTACATTTCAAATTCTTTAGACTGGTATCGATATCAAGAAAGAT
AACATGGCTCTCCAAAGATTACGTGAAGCAGCTGAGAAAGCTAAATGTGA
ATTATCATCTGCTCAACAAACTGACATCAACTTGCCTTACCTAACCATGG
ATGCTACTGGACCAAAACACATGAATATGAAATTAACACGATCTAAATTT
GAACAAATTGTTGGATCCCTCATTCAACGTACTATTGAACCATGTAAGAA
GGCTGTTAAAGATGCTGGTGTTTCCACTGGTGAGATTGGAGAAGTTTTAC
TTGTTGGTGGTATGACCAGAATGCCCAAGGTACAAGACACAGTTCAAGAA
ATCTTTGGCCGTAAACCCTCTAAAGCTGTAAATCCAGATGAAGCAGTTGC
AATCGGAGCAGCTATTCAAGGAGGTGTTTTAGCTGGTGAAGTCAAAGATA
TTCTTTTGTTGGATGTTACCCCATTATCTCTTGGTATTGAAACTCTCGGA
GGAGTCATGACCAAATTAATTAACAGAAACACTACTATCCCAACCAAAAA
GAGTCAAGTTTTCTCAACTGCTGCTGATGGCCAAACACAAGTAGAAATTA
AAGTACATCAAGGAGAGCGTGAAATGGCAGCTAATAATAAAATGTTAGGA
CAATTTTCTTTAGTCGGTATTCCACCAGCACCAAGAGGTGTTCCTCAAGT
TGAAGTTACTTTTGATATTGATGCTAATGGTATTGTGAATGTATCTGCAC
GTGATAAGGGAACTGGCAAAGAACAACAAAGTAAGTTTTATATAATTATA
CTTGAAGCCTGGTTCAGCTACGCTTTTTTTCGAAAATTTATTTTGAACTC
TCTTAACGTAGCGATAAGCGGAAGTTTACTTACCCTCGCGAAAAATATTT
TTTTACAAATCCAAATACAAATGTTTTGTTAGTATGATGTTCGCGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCCCCCCCCCCCCGTAACGAAATTTTGTACATCTAAATTAA
ATCTGTTATTTGAATTTTCTTAGACGTGAGCCATATGAACGACTGCTGGT
GTGCAGTTACAGTGTTCAAAGTTTTTCCGTCTTAGACGGATTTCCGTCTC
AGCGAGGTACAAAAAAAGGCTCTTCCGTCTCCAATTTCAACAAAAATTCT
GTAAAACATGAAGAATCTGGCCAGATTTGTTGTTCAAAGTCCATTTCCGT
CTGTGATGAAAAATTTGCTTTGACCACTGGCAGTTAAATTGTTACTATTT
GTTTGTAAGAATCAAAACAAATTATTTGATTAACTTTTTTGATTTTTTTT
ATTTATCAGTTGTCATCCAATCTAGCGGTGGTTTGAGCAAAGATGATATT
GAAAACATGGTCCATGAAGCTGAGAAATTCGCCGAAGAAGACAAGAAGAA
GAAGGATATCATTGAAACCATTAACCAAGCTGAGGGTGCTATCCATGACA
TCGAAAGTAAAATGGAAGAATTCAAAGACCAATTACCCGCTGAAGAGGTT
TGTTTATGTCTTTACATTTACCATCATCTAAAATATCATTTATCTATTTT
TATGACGTAAAGTATTAGTAGTAAAATGTACATTACGTTCATAACAATGT
AGGTGGTTTTTCGGATGAATTAGAGTATGTCCTTATCTCTTGGAGATAAA
AACGTTTTTATCCGACACTTTCATTTTTCATCAGTCTGACATTTGTAAAT
TTTCGTAATGCAGGTCGAGGAATTGAAAAAAGAAGTCGAAACCGTTCGCG
AAAAATTAAACAATAAAGACAATATCGAATCTGCAGAAGAATTACGAGAA
GCATTCCAACAATTGCAACAACGTTCACTCAAACTTTTCGAAATCGCATA
CAAAAAGGTACTTAGATGTTATCGCCTCTCTGAAAGGCCTTGACTTTGAA
GCATATTTTGGTGATTAATAAAAGCTTCCATTTGAATGATTCCGTTGATT
TCCGAGAAATTCTGAAGAGCATTTTGTTCATGAAAGAGCTTTAACATTTT
CGGTGCTTATAAGAAAGGACTAAAAAAACGGAATAACATTGCTCGAAAGT
GTCTGATCAAGAGATTCTAAAAATTTTTGTTTACAAATTTCTTTTAGATG
GCTGCTGATCGCGAGGGTTCATCCTCGTCAGGAGAACAACAACAACAATA
AATCAAAATGTGAGAAGAAAAACGAAAATGTTTTAAAAACACTTCTTCAG
TTGTTATTCTTCAAGAACACTCACATCACATAGGCAGGCCCGTGTTATTT
ATGGATGGGAACGTGAAGAGAGCCTCAAATTTTGCTTTCTGGTTGGAACG
ATTGTCCAAGTTTAAAGATGAACGTTGGAAAGAAAGAAACAGTTTAACTT
GTTGACAAAAATGAAAGACCTGAACTGTCGAAATTTTCGTTGATTCTGAC
CCGCTTTGCTTCCAGTCTGGGTTGTATAGCAATTCATTCCCACGCCTTCG
AATTCACCATATAGTAAGGGAAATATCAGGATCAGCCTCGACCATGGCTC
GACGTTGGTCTTTTTTTCGCCCTTTTTCCACGCTCAATCGACACTGGTGT
ATAATGATCCGTGACAACCTCTACCACACTATGCCAACCCACCTGGATAC
TAAGCGGGTTCGAAAAAGCAAAATCCGAGAGGAAAGTGAATTGTTTTTTT
AAATTAGATAATTATTTTTATTTTTTCGCTCGAACGTGTAATATACAAAT
CGATTTTCAGAATATACTTTATAAGTACGTTTATAATGCTTCACAAATTA
TGCAAGACTAAAATCATCCGACTCTTTTTACCATCGCACTTGTTTTTTTC
GAAATATTTAGACGTTTTTTTATAAACCAGTAATCTTCTGGAGATTCTTG
AAATCACTGTAGACCTTGTTTTCAAAATATTTCTGCTGAGATATCTCAAC

Coding sequence (CDS) from alignment at sc0000091:274501..282700-

>TCONS_00009281 ID=TCONS_00009281|Name=TCONS_00009281|organism=Clytia hemisphaerica|type=CDS|length=1896bp|location=Sequence derived from alignment at sc0000091:274501..282700- (Clytia hemisphaerica)
ATGCAAAGAGCATTTGCCTCTGGGGGTGTACAAGGACATGTCATTGGTAT
TGATCTGGGTACCACAAACTCTTGTGTTTCCATAATGGAAGGGTCTACTC
CAAAAGTTATTGAAAATGCAGAGGGTGTACGAACAACACCATCCGTCGTT
GCCTTCACACCTGAAGGTGAAAGACTTGTCGGTGCTCCCGCTAGACGACA
GGCTGTTACCAATTCTGAAAATACATTGTATGCTACAAAACGATACATTG
GAAGAAGGTTTGATGATGCTGAAGTCCAAAAAGATATTAAAAATGTCCCA
TACAAACTTGTCAAAGCTTCAAATGGAGATGTCTGGTTTGAAGCCCAAGG
AAAATTATATTCACCAAGTCAAGTTGGAGCTTTCACCCTCATGAAAATGA
AAGAAACTGCAGAAAGTTATCTTGGAACCAGTGTTAAGAATGCTGTTGTT
ACTGTCCCTGCCTATTTCAATGATTCCCAAAGACAGGCTACCAAAGATGC
TGGCAAGATTTCAGGATTGAATGTTTTGCGTGTAATCAATGAGCCAACTG
CTGCTGCTCTTGCTTTTGGGCTAGAGAAGAGTGATGATAAAATTATTGCT
GTTTACGATTTGGGAGGTGGTACCTTTGATATCTCAGTTCTTGAAATCCA
AAAGGGTGTATTTGAAGTAAAGTCAACAAATGGCGACACCTACCTTGGTG
GTGAAGATTTCGATATGGTCTTGTTGGAACATCTTTGTCAAGAATTCAAA
AAAGATACTGGTATCGATATCAAGAAAGATAACATGGCTCTCCAAAGATT
ACGTGAAGCAGCTGAGAAAGCTAAATGTGAATTATCATCTGCTCAACAAA
CTGACATCAACTTGCCTTACCTAACCATGGATGCTACTGGACCAAAACAC
ATGAATATGAAATTAACACGATCTAAATTTGAACAAATTGTTGGATCCCT
CATTCAACGTACTATTGAACCATGTAAGAAGGCTGTTAAAGATGCTGGTG
TTTCCACTGGTGAGATTGGAGAAGTTTTACTTGTTGGTGGTATGACCAGA
ATGCCCAAGGTACAAGACACAGTTCAAGAAATCTTTGGCCGTAAACCCTC
TAAAGCTGTAAATCCAGATGAAGCAGTTGCAATCGGAGCAGCTATTCAAG
GAGGTGTTTTAGCTGGTGAAGTCAAAGATATTCTTTTGTTGGATGTTACC
CCATTATCTCTTGGTATTGAAACTCTCGGAGGAGTCATGACCAAATTAAT
TAACAGAAACACTACTATCCCAACCAAAAAGAGTCAAGTTTTCTCAACTG
CTGCTGATGGCCAAACACAAGTAGAAATTAAAGTACATCAAGGAGAGCGT
GAAATGGCAGCTAATAATAAAATGTTAGGACAATTTTCTTTAGTCGGTAT
TCCACCAGCACCAAGAGGTGTTCCTCAAGTTGAAGTTACTTTTGATATTG
ATGCTAATGGTATTGTGAATGTATCTGCACGTGATAAGGGAACTGGCAAA
GAACAACAAATTGTCATCCAATCTAGCGGTGGTTTGAGCAAAGATGATAT
TGAAAACATGGTCCATGAAGCTGAGAAATTCGCCGAAGAAGACAAGAAGA
AGAAGGATATCATTGAAACCATTAACCAAGCTGAGGGTGCTATCCATGAC
ATCGAAAGTAAAATGGAAGAATTCAAAGACCAATTACCCGCTGAAGAGGT
CGAGGAATTGAAAAAAGAAGTCGAAACCGTTCGCGAAAAATTAAACAATA
AAGACAATATCGAATCTGCAGAAGAATTACGAGAAGCATTCCAACAATTG
CAACAACGTTCACTCAAACTTTTCGAAATCGCATACAAAAAGATGGCTGC
TGATCGCGAGGGTTCATCCTCGTCAGGAGAACAACAACAACAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005191XLOC_005191Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009281-proteinTCONS_00009281-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009281-exon-sc0000091-1575043694:282521..282700TCONS_00009281-exon-sc0000091-1575043694:282521..282700Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1575043694:281254..281437TCONS_00009281-exon-sc0000091-1575043694:281254..281437Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1575043694:280898..280983TCONS_00009281-exon-sc0000091-1575043694:280898..280983Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1575043694:280626..280750TCONS_00009281-exon-sc0000091-1575043694:280626..280750Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1575043694:279128..279201TCONS_00009281-exon-sc0000091-1575043694:279128..279201Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1575043694:278862..278968TCONS_00009281-exon-sc0000091-1575043694:278862..278968Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1575043694:278558..278720TCONS_00009281-exon-sc0000091-1575043694:278558..278720Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1575043694:276821..277574TCONS_00009281-exon-sc0000091-1575043694:276821..277574Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1575043694:275904..276091TCONS_00009281-exon-sc0000091-1575043694:275904..276091Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1575043694:275544..275687TCONS_00009281-exon-sc0000091-1575043694:275544..275687Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1575043694:274501..275303TCONS_00009281-exon-sc0000091-1575043694:274501..275303Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1510915933:282521..282700TCONS_00009281-exon-sc0000091-1510915933:282521..282700Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1510915933:281254..281437TCONS_00009281-exon-sc0000091-1510915933:281254..281437Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1510915933:280898..280983TCONS_00009281-exon-sc0000091-1510915933:280898..280983Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1510915933:280626..280750TCONS_00009281-exon-sc0000091-1510915933:280626..280750Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1510915933:279128..279201TCONS_00009281-exon-sc0000091-1510915933:279128..279201Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1510915933:278862..278968TCONS_00009281-exon-sc0000091-1510915933:278862..278968Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1510915933:278558..278720TCONS_00009281-exon-sc0000091-1510915933:278558..278720Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1510915933:276821..277574TCONS_00009281-exon-sc0000091-1510915933:276821..277574Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1510915933:275904..276091TCONS_00009281-exon-sc0000091-1510915933:275904..276091Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1510915933:275544..275687TCONS_00009281-exon-sc0000091-1510915933:275544..275687Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1510915933:274501..275303TCONS_00009281-exon-sc0000091-1510915933:274501..275303Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1491911889:282521..282700TCONS_00009281-exon-sc0000091-1491911889:282521..282700Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1491911889:281254..281437TCONS_00009281-exon-sc0000091-1491911889:281254..281437Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1491911889:280898..280983TCONS_00009281-exon-sc0000091-1491911889:280898..280983Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1491911889:280626..280750TCONS_00009281-exon-sc0000091-1491911889:280626..280750Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1491911889:279128..279201TCONS_00009281-exon-sc0000091-1491911889:279128..279201Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1491911889:278862..278968TCONS_00009281-exon-sc0000091-1491911889:278862..278968Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1491911889:278558..278720TCONS_00009281-exon-sc0000091-1491911889:278558..278720Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1491911889:276821..277574TCONS_00009281-exon-sc0000091-1491911889:276821..277574Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1491911889:275904..276091TCONS_00009281-exon-sc0000091-1491911889:275904..276091Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1491911889:275544..275687TCONS_00009281-exon-sc0000091-1491911889:275544..275687Clytia hemisphaericaexon
TCONS_00009281-exon-sc0000091-1491911889:274501..275303TCONS_00009281-exon-sc0000091-1491911889:274501..275303Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:274501..282700 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
63.9664	60.8643	21.3651	17.1726	80.9238	61.6972	68.8191	75.3371	72.9178	71.4841	84.4633	84.5419	126.379	133.867	89.3794	93.5193	97.8081	105.078	52.06	65.4959	103.847	108.634	103.926	107.195	94.6239	114.202	100.239	121.813	98.1181	92.5624
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013126Hsp_70_fam
IPR029048HSP70_C
IPR012725Chaperone_DnaK
IPR029047HSP70_peptide-bd
IPR018181Heat_shock_70_CS
Vocabulary: Molecular Function
TermDefinition
GO:0051082unfolded protein binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
molecular_function GO:0005524 ATP binding
molecular_function GO:0051082 unfolded protein binding
Blast
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BLAST of TCONS_00009281 vs. Swiss-Prot (Human)
Match: GRP75 (Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2)

HSP 1 Score: 937.562 bits (2422), Expect = 0.000e+0
Identity = 482/620 (77.74%), Postives = 558/620 (90.00%), Query Frame = 2 
Query:  161 IMQRAFASGGVQGHVIGIDLGTTNSCVSIMEGSTPKVIENAEGVRTTPSVVAFTPEGERLVGAPARRQAVTNSENTLYATKRYIGRRFDDAEVQKDIKNVPYKLVKASNGDVWFEAQGKLYSPSQVGAFTLMKMKETAESYLGTSVKNAVVTVPAYFNDSQRQATKDAGKISGLNVLRVINEPTAAALAFGLEKSDDKIIAVYDLGGGTFDISVLEIQKGVFEVKSTNGDTYLGGEDFDMVLLEHLCQEFKKDTGIDIKKDNMALQRLREAAEKAKCELSSAQQTDINLPYLTMDATGPKHMNMKLTRSKFEQIVGSLIQRTIEPCKKAVKDAGVSTGEIGEVLLVGGMTRMPKVQDTVQEIFGRKPSKAVNPDEXXXXXXXXXXXXXXXEVKDILLLDVTPLSLGIETLGGVMTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVHQGEREMAANNKMLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDKGTGKEQQIVIQSSGGLSKDDIENMVHXXXXXXXXXXXXXXXXXTINQAEGAIHDIESKMEEFKDQLPAXXXXXXXXXXXXXXXXLNNKDNIESAEELREAFQQLQQRSLKLFEIAYKKMAADR 2020
            + +R +AS  ++G V+GIDLGTTNSCV++MEG   KV+ENAEG RTTPSVVAFT +GERLVG PA+RQAVTN  NT YATKR IGRR+DD EVQKDIKNVP+K+V+ASNGD W EA GKLYSPSQ+GAF LMKMKETAE+YLG + KNAV+TVPAYFNDSQRQATKDAG+ISGLNVLRVINEPTAAALA+GL+KS+DK+IAVYDLGGGTFDIS+LEIQKGVFEVKSTNGDT+LGGEDFD  LL H+ +EFK++TG+D+ KDNMALQR+REAAEKAKCELSS+ QTDINLPYLTMD++GPKH+NMKLTR++FE IV  LI+RTI PC+KA++DA VS  +IGEV+LVGGMTRMPKVQ TVQ++FGR PSKAVNPDEAVAIGAAIQGGVLAG+V D+LLLDVTPLSLGIETLGGV TKLINRNTTIPTKKSQVFSTAADGQTQVEIKV QGEREMA +NK+LGQF+L+GIPPAPRGVPQ+EVTFDIDANGIV+VSA+DKGTG+EQQIVIQSSGGLSKDDIENMV  AEK+AEED++KK+ +E +N AEG IHD E+KMEEFKDQLPA+E  +LK+E+  +RE L  KD+ E+ E +R+A   LQQ SLKLFE+AYKKMA++R
Sbjct:   41 VSRRDYASEAIKGAVVGIDLGTTNSCVAVMEGKQAKVLENAEGARTTPSVVAFTADGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDIKNVPFKIVRASNGDAWVEAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQATKDAGQISGLNVLRVINEPTAAALAYGLDKSEDKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDQALLRHIVKEFKRETGVDLTKDNMALQRVREAAEKAKCELSSSVQTDINLPYLTMDSSGPKHLNMKLTRAQFEGIVTDLIRRTIAPCQKAMQDAEVSKSDIGEVILVGGMTRMPKVQQTVQDLFGRAPSKAVNPDEAVAIGAAIQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKMEEFKDQLPADECNKLKEEISKMRELLARKDS-ETGENIRQAASSLQQASLKLFEMAYKKMASER 659
The following BLAST results are available for this feature:
BLAST of TCONS_00009281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRP750.000e+077.74Stress-70 protein, mitochondrial OS=Homo sapiens G... [more]
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