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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009281 ID=TCONS_00009281|Name=TCONS_00009281|organism=Clytia hemisphaerica|type=transcript|length=2808bpRun BLAST on NCBI protein sequence of TCONS_00009281-protein >TCONS_00009281-protein ID=TCONS_00009281-protein|Name=TCONS_00009281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=631bp MQRAFASGGVQGHVIGIDLGTTNSCVSIMEGSTPKVIENAEGVRTTPSVVRun BLAST on NCBI transcript from alignment at sc0000091:274501..282700- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009281 ID=TCONS_00009281|Name=TCONS_00009281|organism=Clytia hemisphaerica|type=transcript|length=8200bp|location=Sequence derived from alignment at sc0000091:274501..282700- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000091:274501..282700- >TCONS_00009281 ID=TCONS_00009281|Name=TCONS_00009281|organism=Clytia hemisphaerica|type=CDS|length=20856bp|location=Sequence derived from alignment at sc0000091:274501..282700- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009281 vs. Swiss-Prot (Human)
Match: GRP75 (Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2) HSP 1 Score: 937.562 bits (2422), Expect = 0.000e+0 Identity = 482/620 (77.74%), Postives = 558/620 (90.00%), Query Frame = 2
Query: 161 IMQRAFASGGVQGHVIGIDLGTTNSCVSIMEGSTPKVIENAEGVRTTPSVVAFTPEGERLVGAPARRQAVTNSENTLYATKRYIGRRFDDAEVQKDIKNVPYKLVKASNGDVWFEAQGKLYSPSQVGAFTLMKMKETAESYLGTSVKNAVVTVPAYFNDSQRQATKDAGKISGLNVLRVINEPTAAALAFGLEKSDDKIIAVYDLGGGTFDISVLEIQKGVFEVKSTNGDTYLGGEDFDMVLLEHLCQEFKKDTGIDIKKDNMALQRLREAAEKAKCELSSAQQTDINLPYLTMDATGPKHMNMKLTRSKFEQIVGSLIQRTIEPCKKAVKDAGVSTGEIGEVLLVGGMTRMPKVQDTVQEIFGRKPSKAVNPDEXXXXXXXXXXXXXXXEVKDILLLDVTPLSLGIETLGGVMTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVHQGEREMAANNKMLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDKGTGKEQQIVIQSSGGLSKDDIENMVHXXXXXXXXXXXXXXXXXTINQAEGAIHDIESKMEEFKDQLPAXXXXXXXXXXXXXXXXLNNKDNIESAEELREAFQQLQQRSLKLFEIAYKKMAADR 2020
+ +R +AS ++G V+GIDLGTTNSCV++MEG KV+ENAEG RTTPSVVAFT +GERLVG PA+RQAVTN NT YATKR IGRR+DD EVQKDIKNVP+K+V+ASNGD W EA GKLYSPSQ+GAF LMKMKETAE+YLG + KNAV+TVPAYFNDSQRQATKDAG+ISGLNVLRVINEPTAAALA+GL+KS+DK+IAVYDLGGGTFDIS+LEIQKGVFEVKSTNGDT+LGGEDFD LL H+ +EFK++TG+D+ KDNMALQR+REAAEKAKCELSS+ QTDINLPYLTMD++GPKH+NMKLTR++FE IV LI+RTI PC+KA++DA VS +IGEV+LVGGMTRMPKVQ TVQ++FGR PSKAVNPDEAVAIGAAIQGGVLAG+V D+LLLDVTPLSLGIETLGGV TKLINRNTTIPTKKSQVFSTAADGQTQVEIKV QGEREMA +NK+LGQF+L+GIPPAPRGVPQ+EVTFDIDANGIV+VSA+DKGTG+EQQIVIQSSGGLSKDDIENMV AEK+AEED++KK+ +E +N AEG IHD E+KMEEFKDQLPA+E +LK+E+ +RE L KD+ E+ E +R+A LQQ SLKLFE+AYKKMA++R
Sbjct: 41 VSRRDYASEAIKGAVVGIDLGTTNSCVAVMEGKQAKVLENAEGARTTPSVVAFTADGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDIKNVPFKIVRASNGDAWVEAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQATKDAGQISGLNVLRVINEPTAAALAYGLDKSEDKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDQALLRHIVKEFKRETGVDLTKDNMALQRVREAAEKAKCELSSSVQTDINLPYLTMDSSGPKHLNMKLTRAQFEGIVTDLIRRTIAPCQKAMQDAEVSKSDIGEVILVGGMTRMPKVQQTVQDLFGRAPSKAVNPDEAVAIGAAIQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKMEEFKDQLPADECNKLKEEISKMRELLARKDS-ETGENIRQAASSLQQASLKLFEMAYKKMASER 659 The following BLAST results are available for this feature:
BLAST of TCONS_00009281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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