TCONS_00009289 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009289
Unique NameTCONS_00009289
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1085

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009289 ID=TCONS_00009289|Name=TCONS_00009289|organism=Clytia hemisphaerica|type=transcript|length=1085bp
gacaatacctaaaatatgacagagcccgattttcaaaaaacattttttcc
ggccgaaaatgcgggaaatatgccggaaaaaccggtttttttacattttc
atgaattttcatctttttaatcagttttttctgaattttttgcagaaaga
tgcgtattcgtaatgctcaaaacatggctgagatCGATTTTTGAGAANCG
AAGGTCACATGCCACGTTTGTTAGCTATGGTTCATAAAAAACGTCACACG
CCATTACCTGCTCTTATATTCACTTGCGTGATAGCATGGATTATGCTGAT
TCCAGAATCTTCCAACTTCAGCACTCTAGtcaattatttcaattttgctG
CGTGGACATTTTATGGTGCTACCGTTGCAGCGTTGCTATGGTTACGTTAC
AAAGAACCAGATCTGGAACGTCCTTACAGGGTTTTCATCGGAGTTCCCAT
CTTGGTTTTGTTATGTTCAGTCTATTTGGTGGTGGCACCTTTTTATGATT
ATCCCTTGGAATCATTTTACTGTTTGTTGTTTATATTGCTCGGTATTCCT
GTCTACTTCATCTTCGTTCATTTCAAATTATTCCCCAACAAAGTCTACGA
TGGATTCGATGCAATGACAGACTTTATAGAGAGGAAGTGCAATCTATCAA
TGCCAGGAGTTGACCAGAAAGATGAAGTGGATGAGATTgacaaacaaaag
aaagaacaacaaCTAGCAATGCAACCTCTCAAAACTTCCACTGATCAAAT
CTAAAACATTTTGAGTATAATTATCTTTTGAACTCTGATGATCGTTGGAA
GTACGAGTTTGAGTGGTTCACGATGTGTTGCTTTCATAATAACAATTTTA
TACGTGAATGACGAAGAGAAGGAAAACCGATTTTTTGTTGGATACTATCA
AGTCTGGATATGTTCATCTAAGGTTAGAGGCTATGGCCCTTTGATGGATG
TTCAAGCACTTTGATGTATTTGGGTATTCCAGCTATTATCAAAGTGACTG
TTTTAGgcctattttaaagaaaaaaggtcTAAACTACTGCCCTTATACTT
TCATTAATTTTAGTACCTTTAACCTTTACGCCCTC
Run BLAST on NCBI

protein sequence of TCONS_00009289-protein

>TCONS_00009289-protein ID=TCONS_00009289-protein|Name=TCONS_00009289-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MPRLLAMVHKKRHTPLPALIFTCVIAWIMLIPESSNFSTLVNYFNFAAWT
FYGATVAALLWLRYKEPDLERPYRVFIGVPILVLLCSVYLVVAPFYDYPL
ESFYCLLFILLGIPVYFIFVHFKLFPNKVYDGFDAMTDFIERKCNLSMPG
VDQKDEVDEIDKQKKEQQLAMQPLKTSTDQI
Run BLAST on NCBI

transcript from alignment at sc0000091:549841..551694-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009289 ID=TCONS_00009289|Name=TCONS_00009289|organism=Clytia hemisphaerica|type=transcript|length=1854bp|location=Sequence derived from alignment at sc0000091:549841..551694- (Clytia hemisphaerica)
GACAATACCTAAAATATGACAGAGCCCGATTTTCAAAAAACATTTTTTCC
GGCCGAAAATGCGGGAAATATGCCGGAAAAACCGGTTTTTTTACATTTTC
ATGAATTTTCATCTTTTTAATCAGTTTTTTCTGAATTTTTTGCAGAAAGA
TGCGTATTCGTAATGCTCAAAACATGGCTGAGATCGATTTTTGAGAANCG
AAGGTCACATGCCACGTTTGTTAGCTATGGTTCATAAAAAACGTCACACG
CCATTACCTGCTCTTATATTCACTGTAAGTTGTTACTGATCATTTTAAAA
ACATTTGTTGTTGGTGTTTTCTATGAGAATTGGTTATCGTTTTGTTAGAG
AGAGTCAACTCTAGGTAGGTTCGACAAAAAAGGACTCCATGATAATTATT
CTCGGGTACCTCAACCTCTCCTCCACTAAACCCCTCCTAAGTAGTGTCTT
GAAGATTTAACAGCCAGAAAGTCTCTCATTTAAAATCCAAGGTATTAATT
TTTGAGAATAATAAAAAAATTGAATTCTAATTTCTCCTTTTAGTGCGTGA
TAGCATGGATTATGCTGATTCCAGAATCTTCCAACTTCAGCACTCTAGTC
AATTATTTCAATTTTGCTGCGTGGACATTTTATGGTGCTACCGTTGCAGC
GTTGCTATGGTTACGTTACAAAGAACCAGATCTGGAACGTCCTTACAGGG
TAAATTGAATTTTTGATTATGTTTTCATCCGATCTTCATCTCGACTGATG
CTGTTTGTACAAAATCATTTTTTCCCAAGGTGTGAAATATATATACTTTA
TTTTTCATGTCAGGTTTTCATCGGAGTTCCCATCTTGGTTTTGTTATGTT
CAGTCTATTTGGTGGTGGCACCTTTTTATGATTATCCCTTGGAATCATTT
TACTGTTTGTTGTTTATATTGCTCGGTATTCCTGTCTACTTCATCTTCGT
TCATTTCAAATTATTCCCCAACAAAGTCTACGATGGATTCGGTAAGTTTC
CATATTTGATTTCGATATTTCAAATTATAGTTTATACTTGCTTGCTGATT
TGAGTTCGAATGGGGAAACCAATTTATTCGAATTATAAGGTGCTTCTCGA
GATCATAATATAGGTAAGCTGAAAATAATATTTCACTGATCTGGATGATT
TGCTCTTGAGAAAGACTCTAACGTGGTCCTAAAATTCGCATGTAAAAGAA
AAAAGTAGATTTTTCATGGCTTGAACATCCTTTTTTATCATGGTCCCCCA
AAACAAAAATCCTCGAACAACTACATTTGTATTTTGTGAACGATTAATTT
TTATGTAGATAATAGGAAGAAAGAAAACTGCATTTTAACTTACTTCCTTT
TCAAATCACCAACTTTATATTTACCAGATGCAATGACAGACTTTATAGAG
AGGAAGTGCAATCTATCAATGCCAGGAGTTGACCAGAAAGATGAAGTGGA
TGAGATTGACAAACAAAAGAAAGAACAACAACTAGCAATGCAACCTCTCA
AAACTTCCACTGATCAAATCTAAAACATTTTGAGTATAATTATCTTTTGA
ACTCTGATGATCGTTGGAAGTACGAGTTTGAGTGGTTCACGATGTGTTGC
TTTCATAATAACAATTTTATACGTGAATGACGAAGAGAAGGAAAACCGAT
TTTTTGTTGGATACTATCAAGTCTGGATATGTTCATCTAAGGTTAGAGGC
TATGGCCCTTTGATGGATGTTCAAGCACTTTGATGTATTTGGGTATTCCA
GCTATTATCAAAGTGACTGTTTTAGGCCTATTTTAAAGAAAAAAGGTCTA
AACTACTGCCCTTATACTTTCATTAATTTTAGTACCTTTAACCTTTACGC
CCTC

Coding sequence (CDS) from alignment at sc0000091:549841..551694-

>TCONS_00009289 ID=TCONS_00009289|Name=TCONS_00009289|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at sc0000091:549841..551694- (Clytia hemisphaerica)
ATGCCACGTTTGTTAGCTATGGTTCATAAAAAACGTCACACGCCATTACC
TGCTCTTATATTCACTTGCGTGATAGCATGGATTATGCTGATTCCAGAAT
CTTCCAACTTCAGCACTCTAGTCAATTATTTCAATTTTGCTGCGTGGACA
TTTTATGGTGCTACCGTTGCAGCGTTGCTATGGTTACGTTACAAAGAACC
AGATCTGGAACGTCCTTACAGGGTTTTCATCGGAGTTCCCATCTTGGTTT
TGTTATGTTCAGTCTATTTGGTGGTGGCACCTTTTTATGATTATCCCTTG
GAATCATTTTACTGTTTGTTGTTTATATTGCTCGGTATTCCTGTCTACTT
CATCTTCGTTCATTTCAAATTATTCCCCAACAAAGTCTACGATGGATTCG
ATGCAATGACAGACTTTATAGAGAGGAAGTGCAATCTATCAATGCCAGGA
GTTGACCAGAAAGATGAAGTGGATGAGATTGACAAACAAAAGAAAGAACA
ACAACTAGCAATGCAACCTCTCAAAACTTCCACTGATCAAATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005195XLOC_005195Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009289-exon-sc0000091-1575043694:551421..551694TCONS_00009289-exon-sc0000091-1575043694:551421..551694Clytia hemisphaericaexon
TCONS_00009289-exon-sc0000091-1575043694:550996..551151TCONS_00009289-exon-sc0000091-1575043694:550996..551151Clytia hemisphaericaexon
TCONS_00009289-exon-sc0000091-1575043694:550704..550881TCONS_00009289-exon-sc0000091-1575043694:550704..550881Clytia hemisphaericaexon
TCONS_00009289-exon-sc0000091-1575043694:549841..550317TCONS_00009289-exon-sc0000091-1575043694:549841..550317Clytia hemisphaericaexon
TCONS_00009289-exon-sc0000091-1510915933:551421..551694TCONS_00009289-exon-sc0000091-1510915933:551421..551694Clytia hemisphaericaexon
TCONS_00009289-exon-sc0000091-1510915933:550996..551151TCONS_00009289-exon-sc0000091-1510915933:550996..551151Clytia hemisphaericaexon
TCONS_00009289-exon-sc0000091-1510915933:550704..550881TCONS_00009289-exon-sc0000091-1510915933:550704..550881Clytia hemisphaericaexon
TCONS_00009289-exon-sc0000091-1510915933:549841..550317TCONS_00009289-exon-sc0000091-1510915933:549841..550317Clytia hemisphaericaexon
TCONS_00009289-exon-sc0000091-1491911889:551421..551694TCONS_00009289-exon-sc0000091-1491911889:551421..551694Clytia hemisphaericaexon
TCONS_00009289-exon-sc0000091-1491911889:550996..551151TCONS_00009289-exon-sc0000091-1491911889:550996..551151Clytia hemisphaericaexon
TCONS_00009289-exon-sc0000091-1491911889:550704..550881TCONS_00009289-exon-sc0000091-1491911889:550704..550881Clytia hemisphaericaexon
TCONS_00009289-exon-sc0000091-1491911889:549841..550317TCONS_00009289-exon-sc0000091-1491911889:549841..550317Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009289-proteinTCONS_00009289-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:549841..551694 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.63248	2.4881	2.15522	2.46745	509.186	378.283	255.345	234.176	55.7657	104.119	79.0269	35.9005	49.5318	54.4062	30.9269	35.7604	34.7742	36.1719	36.3315	37.4824	34.7531	47.0424	30.0442	33.8582	31.438	31.9384	48.1979	47.8814	20.0034	26.1967
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002293AA/rel_permease1
Vocabulary: Molecular Function
TermDefinition
GO:0015171amino acid transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0003333amino acid transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0003333 amino acid transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0015171 amino acid transmembrane transporter activity
Blast
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BLAST of TCONS_00009289 vs. Swiss-Prot (Human)
Match: LAT2 (Large neutral amino acids transporter small subunit 2 OS=Homo sapiens GN=SLC7A8 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.718e-32
Identity = 68/180 (37.78%), Postives = 109/180 (60.56%), Query Frame = 2 
Query:  200 EGHMPRLLAMVHKKRHTPLPALIFTCVIAWIMLIPESSNFSTLVNYFNFAAWTFYGATVAALLWLRYKEPDLERPYRVFIGVPILVLLCSVYLVVAPFYDYPLESFYCLLFILLGIPVYFIFVHFKLFPNKVYDGFDAMTDFIERKCNLSMPGVDQKDEVDEIDKQKKEQQLAM-QPLKT 736
            EGH+P +LAM+H KR TP+PAL+FTC+   +ML+  +S+  TL+NY  F  + FYG TVA  + LR+K+PD+ RP ++ +  PI+ LL   +L+V   +  P+     L  +L G+PVYF+ V+++  P    D  + +T   ++ C +  P V++    +E ++  +EQQ  M QP  T
Sbjct:  347 EGHLPSVLAMIHVKRCTPIPALLFTCISTLLMLV--TSDMYTLINYVGFINYLFYGVTVAGQIVLRWKKPDIPRPIKINLLFPIIYLLFWAFLLVFSLWSEPVVCGIGLAIMLTGVPVYFLGVYWQHKPKCFSDFIELLTLVSQKMCVVVYPEVERGSGTEEANEDMEEQQQPMYQPTPT 524
The following BLAST results are available for this feature:
BLAST of TCONS_00009289 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LAT24.718e-3237.78Large neutral amino acids transporter small subuni... [more]
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