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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009306 ID=TCONS_00009306|Name=TCONS_00009306|organism=Clytia hemisphaerica|type=transcript|length=2426bpRun BLAST on NCBI transcript from alignment at sc0000091:648242..661107- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009306 ID=TCONS_00009306|Name=TCONS_00009306|organism=Clytia hemisphaerica|type=transcript|length=12866bp|location=Sequence derived from alignment at sc0000091:648242..661107- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00009306 vs. Swiss-Prot (Human)
Match: SYK (Lysine--tRNA ligase OS=Homo sapiens GN=KARS PE=1 SV=3) HSP 1 Score: 805.823 bits (2080), Expect = 0.000e+0 Identity = 379/518 (73.17%), Postives = 443/518 (85.52%), Query Frame = 3
Query: 201 GAVEDEEILDPNQYYKIRQQSVANYKKKGENPYPHKFNVDISLTEFIEKYNNVEPGTWHDD-RVSVAGRIHAKRLSGPKLIFYDLRGEGVKIQIMADQRS--SEQDFGYIHGKIRRGDIVGVKGRPGKTKKGELSIQPSEIELLSPCLHMLPHLHFGLKDKETRFRQRYLDLILNEDVRQKFYTRSRVINYVRRFLDQMGFLEIETPMMNMIPGGATAKPFITHHNDLNMDLYLRVAPELYHKMLVVGGIDRVYEIGRQFRNEGIDMTHNPEFTTCEFYMAYADYNDLLRMTEEMVSGMVKSIFGTYKVKFHPDQSETGQGEPLEVDFTPPFRRMSMLSELQKELNVTFPADLDLNTEEARKYLDDLCVKKEVDCSAPRTTARLLDKLVGDFLEVQCVNPTFIMDHPQIMSPLAKWHRDLPGLTERFELFVCRKEVCNAYTELNDPLVQRQMFQNQAKDKAAGDDESMFYDEGFCTALEYGLPPTAGWGMGIDRLCMFLTDSNNIKEVLFFPAMKPDD 1745
G +EE +DPNQYYKIR Q++ K GE+PYPHKF+VDISLT+FI+KY++++PG D + VAGRIHAKR SG KLIFYDLRGEGVK+Q+MA+ R+ SE++F +I+ K+RRGDI+GV+G PGKTKKGELSI P EI LLSPCLHMLPHLHFGLKDKETR+RQRYLDLILN+ VRQKF RS++I Y+R FLD++GFLEIETPMMN+IPGGA AKPFIT+HN+L+M+LY+R+APELYHKMLVVGGIDRVYEIGRQFRNEGID+THNPEFTTCEFYMAYADY+DL+ +TE+MVSGMVK I G+YKV +HPD E G+ +VDFTPPFRR++M+ EL+K L + P TEE RK LDD+CV K V+C PRTTARLLDKLVG+FLEV C+NPTFI DHPQIMSPLAKWHR GLTERFELFV +KE+CNAYTELNDP+ QRQ+F+ QAK KAAGDDE+MF DE FCTALEYGLPPTAGWGMGIDR+ MFLTDSNNIKEVL FPAMKP+D
Sbjct: 63 GVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPE---GQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPED 577 The following BLAST results are available for this feature:
BLAST of TCONS_00009306 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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