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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009324 ID=TCONS_00009324|Name=TCONS_00009324|organism=Clytia hemisphaerica|type=transcript|length=7042bpRun BLAST on NCBI protein sequence of TCONS_00009324-protein >TCONS_00009324-protein ID=TCONS_00009324-protein|Name=TCONS_00009324-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2347bp KAAYSVYASRLRKVENQETIKNAIQRILQIQIDMKNYNLINGTELKGYISRun BLAST on NCBI transcript from alignment at sc0000091:459497..466538 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009324 ID=TCONS_00009324|Name=TCONS_00009324|organism=Clytia hemisphaerica|type=transcript|length=7042bp|location=Sequence derived from alignment at sc0000091:459497..466538 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000091:459497..466538 >TCONS_00009324 ID=TCONS_00009324|Name=TCONS_00009324|organism=Clytia hemisphaerica|type=CDS|length=7041bp|location=Sequence derived from alignment at sc0000091:459497..466538 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009324 vs. Swiss-Prot (Human)
Match: MDN1 (Midasin OS=Homo sapiens GN=MDN1 PE=1 SV=2) HSP 1 Score: 160.614 bits (405), Expect = 7.850e-39 Identity = 163/657 (24.81%), Postives = 285/657 (43.38%), Query Frame = -2
Query: 4471 VVAWSDGIVTKAYKEGYWLVIENISEAQSTVLERLNSVLETPPQWLTTENVGLKEEEVNQNPADDFRVFATMTPPRSKLSEHLSGANITTNAELSPALYNRFSIIHMKNTLKSIDSLLLMYNVMAD-DVLKKHAKTFTQMFDKVRSISDKKVV-----TLHHFERVVKTANKLVESKFNVDPIFELFTGIELHLLGMFQREDRDEIEKVIFD-FFPQYSCDLTKY-------GELLNLD----PEGDK----DGSYIISKAASSSRYEIACKLSIAFFCDYPCLLEGPASCGKSSLVKHIAKINKLKLEYINNTESTTMSDYVGSFLPGGA----YSKGPLVEAMEKGHYFLADEFDLAEPAVMNMLYPLLEGKKQITIPNSSRVISAHPNFRFIAAQNGVS-YPGRKELPKSLRSRFSEVNFQEFTEDEIKAIISKKISYLSTDDAKILDADAEKFAKIFSKINSPTERSNQFR-RQVNLTLRDLLKWLNR--------KEVFPAAKLSLLGFELLYCRIKDRDGRMVLAKIFKETFDDFAFDGDLNRVQPEIFVDEFGKLVNTNNPHVSVKMANVLWISDELKEEIKRSTQSFQEDLWNVCVALECNESILLMGPTSYKSHLISTWIKMKDRSDVEYILCNNSTDSADMLGRLRP 6333
+ A+ +G + +A K+G W++++ I+ A +LE L+ +LE L + G E + ++P DFR+FA M P A L P + NRF+ ++++ D +L+ + + V K + + +R S K+V H+ R + A + S + L+ G L L R ++K+I P L K G L+ ++ GDK D +YI++ + + +I +S YP L++G S GK+SL++ +A INN E T + +Y+G + + + +G L++AM KG++ + DE +LA V+ L LL+ +++ + + V+ AHP F A QN Y GRK L ++ R+RF E++F E E++ I+ K+ S + + K K+ + S S+ F +Q +TLRDL +W R KE L+ G+ LL R++ ++ V+ ++ ++ F L E + GKL +T + +++W T+ + V ALE E +LL+G T I + + C+ +++D LG LRP
Sbjct: 815 LFAFVEGTLAQAVKKGEWILLDEINLAAPEILECLSGLLEGSSGSLVLLDRG-DTEPLVRHP--DFRLFACMNP-----------ATDVGKRNLPPGIRNRFTELYVEELESKEDLQVLIVDYLKGLSVNKNTVQGIINFYTALRKESGTKLVDGTGHRPHYSLRTLCRALRFAASNPCGNIQRSLYEGFCLGFLTQLDRASHPIVQKLICQHIVPGNVKSLLKQPIPEPKGGRLIQVEGYWIAVGDKEPTIDETYILTSSVKLNLRDIVRVVSAG---TYPVLIQGETSVGKTSLIQWLAAATGNHCVRINNHEHTDIQEYIGCYTSDSSGKLVFKEGVLIDAMRKGYWIILDELNLAPTDVLEALNRLLDDNRELLVTETQEVVKAHPRFMLFATQNPPGLYGGRKVLSRAFRNRFVELHFDELPSSELETILHKRCS--------LPPSYCSKLVKVMLDLQSYRRSSSVFAGKQGFITLRDLFRWAERYRLAEPTEKEYDWLQHLANDGYMLLAGRVRKQEEIDVIQEVLEKHFKKKLCPQSL--FSKENVLKLLGKL-STQISTLECNFGHIVW------------TEGMRRLAMLVGRALEFGEPVLLVGDTGCGKTTICQVFAALANQKLYSVSCHLHMETSDFLGGLRP 1431 HSP 2 Score: 120.553 bits (301), Expect = 1.202e-26 Identity = 163/704 (23.15%), Postives = 294/704 (41.76%), Query Frame = -2
Query: 43 LTVPKSLKIIGTVNTKGVGKKLKFSPALRSRMTVIETKAYTDSELVSMLKFSCENMDEIQQKIGQALRRIQP-----------FFK------------ITSKDVFRLKNFVDRLFSIKKSHFKEILAIGIIYL------WVDRIPFNYDSKDI-------PHPYKFVLKTFDLETEESMISIVKGKNFENEKFETDSGDNNLIEISTIDKVAKITNTPLICPTSPTFKLSGKSNMDLFLSKSTFRNVCRIFAASASGLKLLLNGPPGVGKTKIIKQLSNALGFKCTRINFSANTTYDDLIGSFLPIVEEDESRRTIKFQEGILLTAMKESETTWILFDELNLADPSLLQRLMPLFTGAKEFR--NESTNEIVPLKNLQIFATKNPEKIGGGRNKLPDAIDACFTKIFLAPFDESELKDIGNFKMKSAKENGIISDSNAEKILEFHNNISRKVKNTNSMQDT-----FNLRDLEKF--ILLMEKTSEFHRLGETDHAETFESKEIQKECIRTNLNLIYGMRVDKENNQTLVQDEITKIFSASVHSNTKFTVDTGMREFA----RIGHLYVKKGDQIS-----PISFTNSPFICQNLVDLAAAIHTGLAILIQGGNSAGKTSLVRHLSQICQR--KLIIFPATKDTT--IG-----DLIGSWTVNNDKRVLEKIQYLMKKCSNEILMLFITNPDSRSLLKELSNFF 1965
LT K +I+ T+N G K + SPALR+R T I T E +++ N+ + G L RI P F ++ +D+ NF++++ EI++ ++ ++D I S KF++K + + K ++ K + +G +NL I P P P + ++ L + +T N R+ A+ +LL G PGVGKT ++ L+ A G RIN S T DL G+ LP+ E +++G LL A+K W++ DELNLA S+L+ L F E + V + +IF +NP + GGGR LP + FT++F+ P +++ I + + ++N + +K++ F+N I +V FNLRDL ++ ++L++++ + G+ ++ L+YG R+ E ++ ++ +F SN+ + T + ++G+ + +G + P+ + F Q L + + +++ G S GKTSLV+ L+ + K++ + DTT +G DLI W +R+LEK++ ++ + L+ I+ D+ +L+ S+F
Sbjct: 1509 LTAGKKFRILATMNPGGDFGKKELSPALRNRFTEIWCPQSTSRE--DLIQIISHNL-----RPGLCLGRIDPKGSDIPEVMLDFIDWLTHQEFGRKCVVSIRDILSWVNFMNKMGEEAALKRPEIISTVTSFVHAACLVYIDGIGSGVTSSGFGTALLARKECLKFLIKRLAKIVRLTEYQKNELKIYDRMKAKEFTGIDNLWGIH-----------PFFIPRGPVLHRNNIADYALS-AGTTAMNAQRLLRATKLKKPILLEGSPGVGKTSLVGALAKASGNTLVRINLSEQTDITDLFGADLPV--EGGKGGEFAWRDGPLLAALKAGH--WVVLDELNLASQSVLEGLNACFDHRGEIYVPELGMSFQVQHEKTKIFGCQNPFRQGGGRKGLPRSFLNRFTQVFVDPLTVIDMEFIASTLFPAIEKNIV------KKMVAFNNQIDHEVTVEKKWGQKGGPWEFNLRDLFRWCQLMLVDQSPGCYDPGQ-------------------HVFLVYGERMRTEEDKK----KVIAVFKDVFGSNSNPYMGTRLFRITPYDVQLGYSVLSRGSCVPHPSRHPLLLLHQSF--QPLESIMKCVQMSWMVILVGPASVGKTSLVQLLAHLTGHTLKIMAMNSAMDTTELLGGFEQVDLIRPW-----RRLLEKVEGTVRALLRDSLL--ISADDAEVVLRAWSHFL 2151 HSP 3 Score: 90.1225 bits (222), Expect = 1.573e-17 Identity = 92/379 (24.27%), Postives = 166/379 (43.80%), Query Frame = -2
Query: 229 KSTFRNVCRIFAASASGLKLLLNGPPGVGKTKIIKQLSNALGFKCTRINFSANTTYDDLIGSFLPIVEEDESRRTIKFQEGILLTAMKESETTWILFDELNLADPSLLQRLMPLFTGAKEFRNESTNEIVPLK-NLQIFATKNPEKIGGGRNKLPDAIDACFTKIFLAPFDESELKDIGNFKMKSAKENGIISDSNAEKILEFHNNISRKVKNTN---SMQDTFNLRDLEKFILLMEKTSEFHRLGETDHAETFESKEIQKECIRTNLNLIYGMRVDKENNQTLVQDEITKIFSASVHSNTKFTVDTGMREFARIGHLYVKKGDQISPISFTNSPFICQNLVDLAAAIHTGLAILIQGGNSAGKTSLVRHLSQICQRKL 1353
K R++ R+ SA +L+ G VGKT +I+ L+ A G C RIN +T + IG + +S + F+EG+L+ AM++ WI+ DELNLA +L+ L L +E T E+V +FAT+NP + GGR L A F ++ SEL+ I + + + S K+++ ++ ++++ Q LRDL ++ +E +RL AE E + + + + ++ RV K+ ++Q+ + K F + + F+ + ++ ++ I +T LV A+ G +L+ G GKT++ + + + +KL
Sbjct: 1063 KLNLRDIVRV--VSAGTYPVLIQGETSVGKTSLIQWLAAATGNHCVRINNHEHTDIQEYIGCY-----TSDSSGKLVFKEGVLIDAMRKG--YWIILDELNLAPTDVLEALNRLLDDNRELLVTETQEVVKAHPRFMLFATQNPPGLYGGRKVLSRAFRNRFVELHFDELPSSELETILHKRCS-------LPPSYCSKLVKVMLDLQSYRRSSSVFAGKQGFITLRDLFRW-------AERYRL-----AEPTEKEYDWLQHLANDGYMLLAGRVRKQEEIDVIQEVLEKHFKKKLCPQSLFSKENVLKLLGKLSTQISTLECNFGHIVWTEGMRRLAMLV--GRALEFGEPVLLVGDTGCGKTTICQVFAALANQKL 1411 HSP 4 Score: 87.8113 bits (216), Expect = 8.852e-17 Identity = 64/195 (32.82%), Postives = 92/195 (47.18%), Query Frame = -2
Query: 6019 GTKAITEEMQECWKEMIDAVHFKQPVLLTGDSGCGKSTTIDVLARLCGKKVIHLYVTPETESEALVGQNEP-----------DKEKVVAWSDGIVTKAYKEGYWLVIENISEAQSTVLERLNSVLETPPQWLTTENVGLKEEEVNQ----NPADDFRVFATMTPPRSKLSEHLSGANITTNAELSPALYNRFSII 6558
G TE M+ + A+ F +PVLL GD+GCGK+T V A L +K+ + E+ +G P D ++ W DG + +A KE + +++ IS A +VLERLNSVLE + E G E++ ++ FR+ ATM P G + ELSPAL NRF+ I
Sbjct: 1361 GHIVWTEGMRRLAMLVGRALEFGEPVLLVGDTGCGKTTICQVFAALANQKLYSVSCHLHMETSDFLGGLRPVRQKPNDKEEIDTSRLFEWHDGPLVQAMKEDGFFLLDEISLADDSVLERLNSVLEVEKSLVLAEK-GSPEDKDSEIELLTAGKKFRILATMNP----------GGDFGKK-ELSPALRNRFTEI 1543 The following BLAST results are available for this feature:
BLAST of TCONS_00009324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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