TCONS_00009353 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009353
Unique NameTCONS_00009353
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1257

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009353 ID=TCONS_00009353|Name=TCONS_00009353|organism=Clytia hemisphaerica|type=transcript|length=1257bp
ttttcagtTATATTATAAACATTAAAATGATAACAAGAAAGTTTTTACAA
GATTGTGGCAaatatgtgaaaaataaccttCAATCAATGTGGAAAGGCTT
CAAAGGTGAAAATATCATGATGGAAGATGTAAAAGTACTTTATGATTTTG
TTAAACcagaaacaattaaaaattttgatcttATTACTGATATAGATGTC
GGTGGAAAAAGTACAGCAAGCTTAACGACTAGTGTCAATGGGCGACTGAT
GATAAAAGGTGACTTGTCAACTGAGCTAGATAAAGGATTGAAAGTAGATC
ATAGTGGATTTTGTGGGATACGATCACAACCTGTTATTGGATTATTCAAT
AAGGTCGAAACGACTGACATGACTTATTATGATGCAGTGGATATCAAATA
CAGAGGAGATGGTCGTTGTTATTTTGTCAATCTACAAACAGAATCAATGT
TGCTTCTTAACCAGTATGATTTATTTCAAGCTTTTTTGTTCACCAAAGGT
GGACCGTATTGGGAAGTTGAACGAATCCCTTTCACCAAGTTTCTAATGAC
TTACCAAGGTTACCTGCAAGATGAACAAGTTGATTTTGCTAATATTCGAA
CACTTGGTGTTTCCATCAgtgataaaaataatggacCTTTTGgacttgaa
attgaatatattaaGTTGGTCAAAGTGGGCCACCAGCCACAAATATTTAA
GCATCAAAAGTATAAGCGCTTTGAGAAGtattagatttattttttcattt
gttttcaatagattttatattttgtgtatttttgtATGATATAGTTACag
ctaaattgaaaattttaaaatgaaataggTGAAATCTTGATAATTATCTC
GTTTGATTGCATTTTATTTCTTTNGGGTACCTACAAGATGAACAAGTTGA
TTTTGCTAATATTCGAACCCTTGGTGTTTCCATCAGCGATAAAAATAATG
GACCTTTTGgacttgaaattgaatatatcaAGTTGGTCAAAGTGGGCCAC
CAGCCACAAATATTTAAGCATCAAAAGTATAAGCGCTTTGAGAAGTATTa
gatttgttttttcatttgttttcaatagattttatattttgtgtattttt
gtATGATATAGTTACagctaaattgaaaattttaaaatgaaataggTGAA
ATATTGATAATTATCTCGTTTGATTGCATTTTATTTCTTTCAAACGACTG
TAGTTAATGCTTGTTAAGAATTATGACCCGTCGTTATCCCTTGTTAAATA
TATTACC
Run BLAST on NCBI

transcript from alignment at sc0000093:181081..182337+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009353 ID=TCONS_00009353|Name=TCONS_00009353|organism=Clytia hemisphaerica|type=transcript|length=1257bp|location=Sequence derived from alignment at sc0000093:181081..182337+ (Clytia hemisphaerica)
ttttcagtTATATTATAAACATTAAAATGATAACAAGAAAGTTTTTACAA
GATTGTGGCAaatatgtgaaaaataaccttCAATCAATGTGGAAAGGCTT
CAAAGGTGAAAATATCATGATGGAAGATGTAAAAGTACTTTATGATTTTG
TTAAACcagaaacaattaaaaattttgatcttATTACTGATATAGATGTC
GGTGGAAAAAGTACAGCAAGCTTAACGACTAGTGTCAATGGGCGACTGAT
GATAAAAGGTGACTTGTCAACTGAGCTAGATAAAGGATTGAAAGTAGATC
ATAGTGGATTTTGTGGGATACGATCACAACCTGTTATTGGATTATTCAAT
AAGGTCGAAACGACTGACATGACTTATTATGATGCAGTGGATATCAAATA
CAGAGGAGATGGTCGTTGTTATTTTGTCAATCTACAAACAGAATCAATGT
TGCTTCTTAACCAGTATGATTTATTTCAAGCTTTTTTGTTCACCAAAGGT
GGACCGTATTGGGAAGTTGAACGAATCCCTTTCACCAAGTTTCTAATGAC
TTACCAAGGTTACCTGCAAGATGAACAAGTTGATTTTGCTAATATTCGAA
CACTTGGTGTTTCCATCAgtgataaaaataatggacCTTTTGgacttgaa
attgaatatattaaGTTGGTCAAAGTGGGCCACCAGCCACAAATATTTAA
GCATCAAAAGTATAAGCGCTTTGAGAAGtattagatttattttttcattt
gttttcaatagattttatattttgtgtatttttgtATGATATAGTTACag
ctaaattgaaaattttaaaatgaaataggTGAAATCTTGATAATTATCTC
GTTTGATTGCATTTTATTTCTTTNGGGTACCTACAAGATGAACAAGTTGA
TTTTGCTAATATTCGAACCCTTGGTGTTTCCATCAGCGATAAAAATAATG
GACCTTTTGgacttgaaattgaatatatcaAGTTGGTCAAAGTGGGCCAC
CAGCCACAAATATTTAAGCATCAAAAGTATAAGCGCTTTGAGAAGTATTa
gatttgttttttcatttgttttcaatagattttatattttgtgtattttt
gtATGATATAGTTACagctaaattgaaaattttaaaatgaaataggTGAA
ATATTGATAATTATCTCGTTTGATTGCATTTTATTTCTTTCAAACGACTG
TAGTTAATGCTTGTTAAGAATTATGACCCGTCGTTATCCCTTGTTAAATA
TATTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005239XLOC_005239Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009353-exon-sc0000093-1491911889:181081..182337TCONS_00009353-exon-sc0000093-1491911889:181081..182337Clytia hemisphaericaexon
TCONS_00009353-exon-sc0000093-1510915933:181081..182337TCONS_00009353-exon-sc0000093-1510915933:181081..182337Clytia hemisphaericaexon
TCONS_00009353-exon-sc0000093-1575043694:181081..182337TCONS_00009353-exon-sc0000093-1575043694:181081..182337Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:181081..182337 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.89467	4.69301	1.30467	0.455286	0.618574	0.731221	0.371967	0.822053	0.672025	1.18309	0.393291	0.300587	0.262205	0.551062	0.402187	1.04043	0.993171	0.770424	0	0	1.11954	1.07896	6.81801	6.11502	0.168732	0	0.376644	1.32944	3.33434	3.676
Blast
[Close]
BLAST of TCONS_00009353 vs. Swiss-Prot (Human)
Match: CIA30 (Complex I intermediate-associated protein 30, mitochondrial OS=Homo sapiens GN=NDUFAF1 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 2.892e-30
Identity = 60/207 (28.99%), Postives = 119/207 (57.49%), Query Frame = 3 
Query:   60 KYVKNNLQSMWKGFKGE---NIMMEDVKVLYDFVKPETIKNFDLITDIDVGGKSTASLTTSVNGR-LMIKGDLSTELDKGLKVDHSGFCGIRSQPVIGLFNKVETTDMTYYDAVDIKYRGDGRCYFVNLQTESMLLLNQYDLFQAFLFTKGGPYWEVERIPFTKFLMTYQGYLQDEQVDFA--NIRTLGVSISDKNNGPFGLEIEYI 662
            + +K+ +   W+G +G     +++E  KV++ F   E +  + + +D  +GG+S   L    N +  ++ G LS+E  +  +   SG+C + S+   G F +  + D + ++ + ++ RGDGR + VN++ ++        ++  F+FT+GGPYW+  +IPF+KF  + +G ++D Q +     I ++G +++DK +GPF LEI++I
Sbjct:   95 RLLKDEIVDHWRGPEGHPLHEVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGKNNQSALLYGTLSSEAPQDGESTRSGYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDFI 301
The following BLAST results are available for this feature:
BLAST of TCONS_00009353 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CIA302.892e-3028.99Complex I intermediate-associated protein 30, mito... [more]
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