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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009380 ID=TCONS_00009380|Name=TCONS_00009380|organism=Clytia hemisphaerica|type=transcript|length=1964bpRun BLAST on NCBI protein sequence of TCONS_00009380-protein >TCONS_00009380-protein ID=TCONS_00009380-protein|Name=TCONS_00009380-protein|organism=Clytia hemisphaerica|type=polypeptide|length=506bp MPKASIAYSSTINQSDPKADGVVVVGKQEHLNLLKERADVLKPKFGDVINRun BLAST on NCBI transcript from alignment at sc0000093:574945..597147+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009380 ID=TCONS_00009380|Name=TCONS_00009380|organism=Clytia hemisphaerica|type=transcript|length=22203bp|location=Sequence derived from alignment at sc0000093:574945..597147+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000093:574945..597147+ >TCONS_00009380 ID=TCONS_00009380|Name=TCONS_00009380|organism=Clytia hemisphaerica|type=CDS|length=19773bp|location=Sequence derived from alignment at sc0000093:574945..597147+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009380 vs. Swiss-Prot (Human)
Match: PEPL1 (Probable aminopeptidase NPEPL1 OS=Homo sapiens GN=NPEPL1 PE=1 SV=3) HSP 1 Score: 509.99 bits (1312), Expect = 8.843e-174 Identity = 250/466 (53.65%), Postives = 328/466 (70.39%), Query Frame = 3
Query: 171 LKPKFGDVINSERLREAIDHVTPN--SSVELYYKNFTLACMPSKCSRHNAPMLPHSLSRLIKANLQMTPKQYIVIVGEVKSAFALGCAASRIFPLYNRKKDEQK--DQCDVIIEFVFVDDKDHVLSENDVTCLTASAESIRLAAKIVDAPCNEMHVNAFLDEIRTVAKDLNLEAPLIIQDQELVQRGMGGIYGVGKAAVNKPALAVLSYKPSGATKNIAWCGKGIVYDTGGLSIKDKLNMVGMKRDCGGAAGILGAFRSAVKNGFKENLFGVFCLAENAVGPESARPDDVHHMYSGLTVEINNTDAEGRLVLGDGVAFAKKDLQADVIVDMATLTGAQGISTGQFHGAILTNNEDMETKCVMAGKSSGDLVFPVPYTPEFHFDEFKSLIADMKNSVKNRANAQVSCAGLFIGSHIDHAFEFPGVWLHVDMAYPVEENDLGTGYGVALLTTLFGKYSENKMLSDIAP 1556
L+P+ + E + A+ + PN S LY T+A +P + SRHN+P H ++RL++ L + IV+V E FA CA +R FPL+ + + ++ V +EF V + + + + CL + + +RLAA+IVD PCNEM+ + FL+EI V K+L + P II+D+EL RG GGIYGVGKAA++ PALAVLS+ P GAT+ IAW GKGIVYDTGGLSIK K M GMKRDCGGAA +LGAFR+A+K GFK+NL VFCLAEN+VGP + RPDD+H +YSG TVEINNTDAEGRLVL DGV++A KDL AD+I+DMATLTGAQGI+TG++H A+LTN+ + E CV AG+ GDLV P+ Y PE HF EF S +ADMKNSV +R N+ SCAGLFI SHI F++PGVW+H+D+A PV + TG+GVALL LFG+ SE+ +L+ ++P
Sbjct: 43 LQPR----VTEELWQAALSTLNPNPTDSCPLYLNYATVAALPCRVSRHNSPSAAHFITRLVRTCLPPGAHRCIVMVCEQPEVFASACALARAFPLFTHRSGASRRLEKKTVTVEFFLVGQDNGPVEVSTLQCLANATDGVRLAARIVDTPCNEMNTDTFLEEINKVGKELGI-IPTIIRDEELKTRGFGGIYGVGKAALHPPALAVLSHTPDGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLGAFRAAIKQGFKDNLHAVFCLAENSVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADGVSYACKDLGADIILDMATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGRKCGDLVHPLVYCPELHFSEFTSAVADMKNSVADRDNSPSSCAGLFIASHI--GFDWPGVWVHLDIAAPVHAGERATGFGVALLLALFGRASEDPLLNLVSP 501 The following BLAST results are available for this feature:
BLAST of TCONS_00009380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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