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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009441 ID=TCONS_00009441|Name=TCONS_00009441|organism=Clytia hemisphaerica|type=transcript|length=5519bpRun BLAST on NCBI protein sequence of TCONS_00009441-protein >TCONS_00009441-protein ID=TCONS_00009441-protein|Name=TCONS_00009441-protein|organism=Clytia hemisphaerica|type=polypeptide|length=724bp MDEPVHRRSDIIALKRSLEDDQAAEKNMNEKIELCNDIIMNVLKVKAAEWRun BLAST on NCBI transcript from alignment at sc0000095:73892..87435+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009441 ID=TCONS_00009441|Name=TCONS_00009441|organism=Clytia hemisphaerica|type=transcript|length=13544bp|location=Sequence derived from alignment at sc0000095:73892..87435+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000095:73892..87435+ >TCONS_00009441 ID=TCONS_00009441|Name=TCONS_00009441|organism=Clytia hemisphaerica|type=CDS|length=6525bp|location=Sequence derived from alignment at sc0000095:73892..87435+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00009441 vs. Swiss-Prot (Human)
Match: TBD (Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=2 SV=2) HSP 1 Score: 382.489 bits (981), Expect = 9.925e-118 Identity = 209/467 (44.75%), Postives = 301/467 (64.45%), Query Frame = 2
Query: 41 MSIVTIQLGQCGNQIGCDLFSLLYQDAHQTPKYSSFETLENTSYKMDTLERYFTEINTSSEKRYEAKAVLVDMEVKVVHACKQTAAKIGAWNYSS-SSLVRKKGSGNNWALGFHGYGHSVADDIIDLCRKEAEKCDRFAGFFILMXXXXXXXXXXXXYVTQELRDAFPSSYLVNHVVWPYTSGEVIVQNYNIMLTMSRLQASSDLVIAQRNDHLHQICAKRLGFKKISLQHVNSVIAHKLASILQP-----ATEEYRSVNTLSGIVTALGTHPAYKLASVKCIPHISDQAMSYSVFVWPALLKHMRQMLIADSPMEDGINWEIREPQQSSTASASDVFESHTQDGEIRRSSFNKSIANLMILRGKELHEADTNSFGNPRLYSEG-SPI--YTEWQQPRSFNQYQKSITLLSNSQTFVQPMTKSVTKAWEMFNSKAYLHQYEKYGLGVDDFIDSFGVVEQMIADYSRI 1414
MSIVT+QLGQCGNQIG ++F L D+H + S EN +Y+ ER+F+E A+AVLVDME KV++ AA+ G W Y + +K+GSGNNWA G+ +G + I+++ RKE EKCD F+GFFI+MS+AGGTGSGLGA+VTQ L D + +S +N ++WPY +GEVIVQNYN +LT+S L SSD ++ ND +H+ICAK + K+IS +N V+AH+L S+ QP ++ YR N L ++ L HP +K+ SV+ IPH+S+ +++Y+ F W LLKH+RQMLI+++ ME+GI+ + P S + + ++ FN SIANL+ILRGK++ AD F +P LY+ P+ + W+ R+F++Y+KS L+SNSQ V+P+ V KAW MF SKAY+HQY K+G+ +DF+DSF +EQ++A Y +
Sbjct: 1 MSIVTVQLGQCGNQIGFEVFDALLSDSHSSQGLCSMR--ENEAYQASCKERFFSEEENGVPI---ARAVLVDMEPKVINQMLSKAAQSGQWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIMSMAGGTGSGLGAFVTQNLEDQYSNSLKMNQIIWPYGTGEVIVQNYNSILTLSHLYRSSDALLLHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSAESSFHYRR-NPLGDLMEHLVPHPEFKMLSVRNIPHMSENSLAYTTFTWAGLLKHLRQMLISNAKMEEGIDRHVWPP-----LSGLPPLSKMSLNKDLH---FNTSIANLVILRGKDVQSADVEGFKDPALYTSWLKPVNAFNVWKTQRAFSKYEKSAVLVSNSQFLVKPLDMIVGKAWNMFASKAYIHQYTKFGIEEEDFLDSFTSLEQVVASYCNL 453 The following BLAST results are available for this feature:
BLAST of TCONS_00009441 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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