TCONS_00009447 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009447
Unique NameTCONS_00009447
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2126

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009447 ID=TCONS_00009447|Name=TCONS_00009447|organism=Clytia hemisphaerica|type=transcript|length=2126bp
GCCGAGGTAGGTCAATGGAAgtcTTCTAGATAAAAAACATAACCAACATG
GCAGATATTCCCGATGCAAAAGAACAATATATGAGACTCAACAATGAAAT
CAAACCGAGAtttgagaaattgaaaaatatagatCTATTCGTCATCGATA
ACTCTATCCGTGAGTCCACTGTGGGTGCTCTTCGTGGACACACACTGGAA
AATAAATACAGCATTTTGAATGAGACAAAGGAGCTTGGTTTCCAGCATAA
CATCGTTGGAGCATTTTCACACTTGCGTAGAGTCGACGATGAATTTATCA
CGCATCTCATCAAGAGTGGGGAAGATATGACCAACAAGTATGCCTTCTCC
GAATTTTATGACAGTTGTGACAAGAAAACACATTTACCTGTTCCCGGTAT
CCCGATCGGATTACAAAAATGTAAAGAGCTTGGTGTCCCCAATGTGATTA
TGGAGGTTGACTTGGCAAATCTAGCACCTGAAAGTCAATTCACCCATGAG
AAGAGATGCCAACTCTTCCTAGAAAGATTCCAATGGATTCGTGAGAATCT
AAAGTCCCCAGGTAGGATTTTAATCAATTTACGTGATCTCCCAGCTGCCA
TCATTAATCCAAAACTCCTTGATCTAGTCTTGGAGACAGTTGATTTCCTA
TCTCGACATCGTCCTCAAATATTTGCTATCCTTACTGAGGAACCGACTGG
TCAATACTTTCCTGAACAACTACGAAACATGACCAAGACAGTCACCGATC
TGATGAAAGGAAATGGATACACCGGTCATTTCTTGGTCCACATTCATCAG
CAATGGGGTCTACACAATGCTGGTAACTTAGAATGTCTTGCAAATGGTGC
TACAGGGATTTGGTGCTCTGTATCCGAGGAAGGAGCCGCTCTTGGACATG
CTTCGTCAGCATTAACAATTATGAATCTCATTCGACTTGGAAACACCAAA
GTTCAAGAGCGTTATAACTGCAAATATATAAGAAAAGCTGCTCAGAATAT
CACCCAGGTTGTATCGGGCAAACCCGCCCATCCAAAAACACCAGTTTATG
GTGCTAGAGCTGTTGATCAAGTCTTTGGTCTCAGTGGAATGGGCGGTAAT
GTGGGCGGATTTGGTAATATGGACCTTGCCGAGTTTTTCGATATCACCAA
AACAATGCGAATTACCACACTTGCATCAAATGATATGATTGTTACCAGAT
TGACCCGTTTGTTTGGCGAGGATCCTAATTTCACTGAAGCAAGAGCGGAG
CTGATGAAACAGCAAATGTTGGATGATTACAAGAACAACAAGAAAGAGGA
ATACCACAGTCCTATTGGATTAATCACATTGTTTGATAAAGCTGGAGGTA
AAAAGACTCCAGCAATGTTGAAAGCACTTCAAgagTATGAAGTCCAATCG
TTGCATATCCAAGAGCTGATCGAAGAGATTCACGACCTTTGGAAGTTGTG
GGATTCTTCAGACGGCAATTTAGATGGAAACATCACATTCGATAATTTCT
ATAACGCCTTCATGAACGAATACTTCGGTTGTTACAGATGTACGCAAACT
CAACAAGCACTTCAAGCTATTAATGTTGTTGATGATGATGTCATCTCTTG
GGATGAGTTTTCCATCTTTTTGAAATGGGCTGGTAAAGAATATCCGCAAG
TTGAAGACGCAGAAGCTTTACTGGAGAAAGCTTTCTTGGAAGGTATTGTA
CCAGCAATGCAAGATGAAGTTATCAAGAGTGCCAAATCTGGCAAAAGTCT
TTTCCACGATCCACATAATTTCTAAATGAATTACTGTAATGGAATTTGAT
GCATAGACTCTTAgaattaaattattttgttcTAACAATTATTATTTATT
TCGAATTGTATTAAAGTCACACGTCACAAGAAGATGAAATTCACCTATAA
ATCTTGCCACCAAAAGGATTTCAGGTTGGAGTTGAcgaaattatatttta
ttaggaAACTCGACTCCATTTCTCTTTCATCCAGGTTGATAGATGTATTG
ACGCACTTAAGGTTTATTATGCCCCTGATACACatcttatttataaaaaa
tccGTACATATAATTTATATTTAACATTTGTATTTTCTCAAATGCTGAAT
ATAAACATCCTTAAAAACGAAAAACT
Run BLAST on NCBI

transcript from alignment at sc0000095:112719..119729+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009447 ID=TCONS_00009447|Name=TCONS_00009447|organism=Clytia hemisphaerica|type=transcript|length=7011bp|location=Sequence derived from alignment at sc0000095:112719..119729+ (Clytia hemisphaerica)
GCCGAGGTAGGTCAATGGAAGTAAGTAAGTCTTGAAAATATCTTTACAAC
TATGTAATAAAGTGCATTGGTATGAATTTAATTTGACAGAtggtcaaaaa
agttttatacaTGGAATTGAATTTAATAGCAAGTAGCACCGGGATTTTTC
TTTCCATTTCTTAGTGAGTTTTACTTTGATgaattctgaaaaatagaagc
cttttaGATGTTCTGACGTAAATTCACGCAAAGTGGAATGGGCGTTACTG
CGTAGAAAAAAAGCCGTGACTTCTAGTATAATAATTTCGTTGGaaggctt
gaaaatgaaatttggcaGGAATGCAGGTTCTTAGTATGTTCGTTTATTTC
TTTATAGAAATGCTGACAAATTTTTACAGATCCGTCTCTTTCCACAAAGA
TTTCTACCAAAATATTCTGTCCAGGAAATATCCAGTCGGAAAGATGTCCG
TTAGTATAAAATCTGTTTGGGAAACATTCGTTAGGAAAAGTTTCCGGGta
taatttgagaaaaattcgtAAAAGGTAATACTCTTCGGTaaaagtcccgg
ggggggggttNTTTTTTGGTCAAATATTGCCATTAAATAAGCAAATATCT
GTAAGGAAAGTGTACGAAATAATTTAGATTTTGTGGTAATTCATTTATGA
CGGTTGgcggaaatttttcaattttggttagAAANTATAAAATCTGTTTG
GGAAACATTCGTTAGGAAAAGTTTCCGGGtataatttgagaaaaattcgt
AAAAGGTAATACTCTTCGGTaaaagtcccggggggggggttagtTAGgaa
aaattgggtacggggacgtgcggCTCGTCAGAGTCTtcttttaggctctg
aagatatctgacagggtccaaaatttactgattttcAAGCCCATCCCgca
taaaatgattttgaagttTCGCTTAGGCTCATCAACAAAATATGTTGGAA
AAAAACTCTCAAGCCCCCTACTAATCtgaatatttcttttaaaaactttc
ctGTCTATTCTGGTCTTGACAGTTTGAACACTTATAACCAGGATATTGTT
CCAGCAAATGATGATTGGTTTATTTTATAAACAAACGCAGGCGTTCagct
ttattttcctttttaaaagaGAAGTTAAGGTTACAAGGTCGTTGATcact
taactttttttggtgtcGCCGGAGAATTCACACGGCtcgatttgaaaaaa
ttcaactttgtgtGCAGAGCCTCTCTTCTATTATTCTTTCTGAAGAAGCC
AATCAGCGAGAAGTTAAACATACTGGCTGTGTCTTTGTTTTCATtatgtt
tgttttgaattttttacgcgcaacctttttcttattttcaatgGAAGAAT
AACAGCGCTCAGCGACCAAATCGCTCGAGCCATGTACGTTGTTGGGCGAC
CAAATAAGCTAAGTGGACAACGACCTTAAATATAGAGATAAAAATTGAGA
TATAAATGAGATTGTCAAATGGTTCGGTTAAGAGAGCCCATGCaatgatt
ttgttgaaaataaaataaaacttgttGTCTTTCCTTATTACTTAGATTgg
ctaaaatagattttttcggAGGTAAATTAATTTGACGGATATGggtggaa
aaaattaaattcggTTGAAGTTTTAATGGGTGGATAAAGTATTTTTGGTC
AAATATTGCCATTAAATAAGCAAAATATCTGTAAGGAAAGTGTACGAAAT
AATTTAGATTTTGTGGTAATTCATTTATGACGGTTGgcggaaatttttca
attttggttagAAAGTGTTAGAACAAATCTGCAAATTTATTCTATCGAAA
GTGTGCGCGTGTTTACATTTGCCGTaatttggaatttgatcataaGAGAC
TcaattttaatagcttttccattgtatttttcGCTAAATAACTTTTAAAG
GAATTATCTTTTTAGTGTGATTACGCAAAACGTGATTCCCTCATGTTCAA
AACCTTAAATCTCAAATAAAAGGAATACTACAAGCAATTACTAATGACAA
GCATGTGTAAACGCGTCCATTGTTTATCATAAGTGTAACAGTTTAGTATA
TTGCCTAGAGGGCCCTAGAGAGTACTAAAAGATTATCTAGTTCTGTATAA
AAAGTAGTGTCGGATTTACGATAGataaaaacttgtaaaaagCAGGTGAG
ATGTCAAAATGTTGATTAAAAACTTCTTCGTTTGTGTACAATGAAATGTT
ATAACTGTCATTTTTGTTTAACTATCAAGAAACAAGAGGCATCTCCTTTG
TTTCTTGGGACTACAAAGAATCGAAATACAGAAAAATTCGGCTTATCTTG
CATGCAGCTGTCAGATTTGCGATTTAACTTGGATCTACTATAAAATGATA
TGACTATATCATCCATGtcagtgatacaggggtgtaccCGTTTTCGAGAA
tttgatcttaattttttttctaggtcTTCTAGATAAAAAACATAACCAAC
ATGGCAGATATTCCCGATGCAAAAGAACAATATATGAGACTCAACAATGA
AATCAAACCGAGAtttgagaaattgaaaaatatagatCTATTCGTCATCG
ATAACTCTATCCGTGAGTCCACTGTGGGTGCTCTTCGTGGACACACACTG
GAAAATAAATACAGCATTTTGAATGAGGTGAGGGAAACTTCAGTAAGAGT
TGAATAAAAGTCGTCGAAAAGCAAGAGTTTTCAGAATCATTGTGGTCCAT
TTTTTGGGCTTGttttataatttctatcaaaaatATCGGAAAGAAAAGCG
TGCCTGGTCTATATTTTTTGTGACTAAGTGTGTGTGGTTACCGTTTACTT
TGATCATCCGCTTATGATGCTATTGAATTGTATGTAAATAAACTTTTTAG
ATTTCCTAAAAGCCTCAAGAACTATATAAATTTGATCAAAACctattttc
tttcctttcaatcATCCATTCGGATTAAAGCTATTTAAGAAACAAATTTG
AATCTATATATTTTATACTACAGACAAAGGAGCTTGGTTTCCAGCATAAC
ATCGTTGGAGCATTTTCACACTTGCGTAGAGTCGACGATGAATTTATCAC
GCATCTCATCAAGAGTGGGGAAGATATGACCAACAAGTATGCCTTCTCCG
AATTTTATGACAGTTGTGACAAGAAAACACATTTACCTGTTCCCGGTATC
CCGATCGGATTACAAAAATGTAAAGAGCTTGGTGTCCCCAATGTGATTAT
GGAGGTTGACTTGGCAAATCTAGCACCTGAAAGTCAATTCACCCATGAGA
AGAGATGCCAACTCTTCCTAGAAAGATTCCAATGGATTCGTGAGAATCTA
AAGTCCCCAGGTAGGATTTTAATCAATTTACGTGATCTCCCAGCTGCCAT
CATTAATCCAAAACTCCTTGATCTAGTCTTGGAGACAGTTGATTTCCTAT
CTCGACATCGTCCTCAAATATTTGCTATCCTTACTGAGGAACCGACTGGT
CAATACTTTCCTGAACAACTACGAAACATGACCAAGACAGTCACCGATCT
GATGAAAGGAAATGGATACACCGGTCATTTCTTGGTCCACATTCATCAGC
AATGGGGTCTACACAATGCTGGTAACTTAGAATGTCTTGCAAATGGTGCT
ACAGGGATTTGGTGCTCTGTATCCGAGGAAGGAGCCGCTCTTGGACATGC
TTCGTCAGCATTAACAATTATGAATCTCATTCGACTTGGAAACACCAAAG
TTCAAGAGCGTTATAACTGCAAATATATAAGAAAAGCTGCTCAGAATATC
ACCCAGGTATTTATAAAATCTTCCTTTTGACATCCCTGTATGAATACTTT
TTTGTCAGAATTTTCTCTCATTGTTAAAACAATTACATGGTAATTATAAC
TGAACGAAAAGTACTTCGGGTATTAGAAACGATTCACTTATTTTCATAAG
CCAAAGCCATTTACTTCTCAAACGATGGGAAAAAATTGTCAACAACAGAG
GCAAACAGCCATTCTATTTCCGattttaaaacttcaaattcaatcttttc
aaGAAGACATATAGTACAGTCACTGACAATGAGAATCACCCCTCTTTTTT
CAGGTTGTATCGGGCAAACCCGCCCATCCAAAAACACCAGTTTATGGTGC
TAGAGCTGTTGATCAAGTCTTTGGTCTCAGTGGAATGGGCGGTAATGTGG
GCGGATTTGGTAATATGGACCTTGCCGAGTTTTTCGATATCACCAAAACA
ATGCGAATTACCACACTTGCATCAAATGATATGATTGTTACCAGGTTTGT
AATCATTCTTTTCACTTTGTTAAAAGTCTCTCGCAAATGACTCTAAAGAT
GATGAGcaaaatcatattttttaataattcttTTGTACATTTTCGTTTTC
AAACCACCCACcctaaaaaatgcaaaaatttaaaGTTGAATTAAACGAAA
ACGATTGATACCATCGGACAGAGGCATGAATATCTGGGCAAGAGAAGTAC
TATTATAAGGTTTGCCCCCCATCAGTATGTACAACTATGTTTGAAAAGTA
TATACTGAGGTATTCTCAAAACCAGCTTTTACTACCACGACCATACTTAG
AGTTTCAGATGCCGGAGAAAATATAATCATTGTAAATattattctttcat
tttacaCAATAGATTGACCCGTTTGTTTGGCGAGGATCCTAATTTCACTG
AAGCAAGAGCGGAGCTGATGAAACAGCAAATGTTGGATGATTACAAGAAC
AACAAGAAAGAGGAATACCACAGTCCTATTGGATTAATCACATTGTTTGA
TAAAGCTGGAGGTAAAAAGACTCCAGCAATGTTGAAAGCACTTCAAgagg
tttgtttatttttactaTTCGTCAATTCTTTACACACTTTATAGAATTGA
CTTCGttttaatacacccctgtgtcacaagaCTCGAGACTGGGACTCCAG
CCGCACTGGAAAaaagactttgatttcatccccattcgaaattcaatgtt
tataaATTGTACTCtgaaaccatccccactggatttttaaccttggaaca
atagaatattATCCCCACTAGGGGTGTATTAATTGAGTCATTGAGGCACG
ACAtaaaaaacttttcataaattacatcacgTGCAatgcttacctcgttt
tcaaaatgttaCTATGGNCATTCTTTTCACTTTGTTAAAAGTCTCTCGCA
AATGACTCTAAAGATGATGAGcaaaatcatattttttaataattcttTTG
TACATTTTCGTTTTCAAACCACCCACcctaaaaaatgcaaaaatttaaaG
TTGAATTAAACGAAAACGATTGATACCATCGGACAGAGGCATGAATATCT
GGGCAAGAGAAGTACTATTATAAGGTTTGCCCCCCATCAGTATGTACAAC
TATGTTTGAAAAGTATATACTGAGGTATTCTCAAAACCAGCTTTTACTAC
CACGACCATACTTAGAGTTTCAGATGCCGGAGAAAATATAATCATTGTAA
ATattattctttcattttacaCAATAGATTGACCCGTTTGTTTGGCGAGG
ATCCTAATTTCACTGAAGCAAGAGCGGAGCTGATGAAACAGCAAATGTTG
GATGATTACAAGAACAACAAGAAAGAGGAATACCACAGTCCTATTGGATT
AATCACATTGTTTGATAAAGCTGGAGGTAAAAAGACTCCAGCAATGTTGA
AAGCACTTCAAgaggtttgtttatttttactaTTCGTCAATTCTTTACAC
ACTTTATAGAATTGACTTCGttttaatacacccctgtgtcacaagaCTCG
AGACTGGGACTCCAGCCGCACTGGAAAaaagactttgatttcatccccat
tcgaaattcaatgtttataaATTGTACTCtgaaaccatccccactggatt
tttaaccttggaacaatagaatattATCCCCACTAGGGGTGTATTAATTG
AGTCATTGAGGCACGACAtaaaaaacttttcataaattacatcacgTGCA
atgcttacctcgttttcaaaatgttaCTATGGTAATTGTTTCTCAGATGA
GTCCGAAGAAGTTTATTTAATATACAAAAATAACACCTTAACTCTCGAAA
GttttaatcaccttggtaatggtgACAAATAAAGGTAGTCGTTGAACTCA
Aaatgatttatgaaaaggcctattctttaaagggacataaaagtactttc
gaaatttgtaaacaaaccgtatgcaacAACAACCATATATGACAAGACAA
AACACGTCGTCGTTGTAACATAATCAGACACCAAGTGCAATTCCtactaa
aaaatctttttaatttctAGTATGAAGTCCAATCGTTGCATATCCAAGAG
CTGATCGAAGAGATTCACGACCTTTGGAAGTTGTGGGATTCTTCAGACGG
CAATTTAGATGGAAACATCACATTCGATAATTTCTATAACGCCTTCATGA
ACGAATACTTCGGTTGTTACAGATGTACGCAAACTCAACAAGCACTTCAA
GCTATTAATGTTGTTGATGATGATGTCATCTCTTGGGATGAGTTTTCCAT
CTTTTTGAAATGGGCTGGTAAAGAATATCCGCAAGTTGAAGACGCAGAAG
CTTTACTGGAGAAAGCTTTCTTGGAAGGTATTGTACCAGCAATGCAAGAT
GAAGTTATCAAGAGTGCCAAATCTGGCAAAAGTCTTTTCCACGATCCACA
TAATTTCTAAATGAATTACTGTAATGGAATTTGATGCATAGACTCTTAga
attaaattattttgttcTAACAATTATTATTTATTTCGAATTGTATTAAA
GTCACACGTCACAAGAAGATGAAATTCACCTATAAATCTTGCCACCAAAA
GGATTTCAGGTTGGAGTTGAcgaaattatattttattaggaAACTCGACT
CCATTTCTCTTTCATCCAGGTTGATAGATGTATTGACGCACTTAAGGTTT
ATTATGCCCCTGATACACatcttatttataaaaaatccGTACATATAATT
TATATTTAACATTTGTATTTTCTCAAATGCTGAATATAAACATCCTTAAA
AACGAAAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005296XLOC_005296Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009447-exon-sc0000095-1491911889:112719..112738TCONS_00009447-exon-sc0000095-1491911889:112719..112738Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1510915933:112719..112738TCONS_00009447-exon-sc0000095-1510915933:112719..112738Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1575043694:112719..112738TCONS_00009447-exon-sc0000095-1575043694:112719..112738Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1491911889:115142..115345TCONS_00009447-exon-sc0000095-1491911889:115142..115345Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1510915933:115142..115345TCONS_00009447-exon-sc0000095-1510915933:115142..115345Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1575043694:115142..115345TCONS_00009447-exon-sc0000095-1575043694:115142..115345Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1491911889:115692..116474TCONS_00009447-exon-sc0000095-1491911889:115692..116474Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1510915933:115692..116474TCONS_00009447-exon-sc0000095-1510915933:115692..116474Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1575043694:115692..116474TCONS_00009447-exon-sc0000095-1575043694:115692..116474Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1491911889:116772..116962TCONS_00009447-exon-sc0000095-1491911889:116772..116962Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1510915933:116772..116962TCONS_00009447-exon-sc0000095-1510915933:116772..116962Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1575043694:116772..116962TCONS_00009447-exon-sc0000095-1575043694:116772..116962Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1491911889:118196..118382TCONS_00009447-exon-sc0000095-1491911889:118196..118382Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1510915933:118196..118382TCONS_00009447-exon-sc0000095-1510915933:118196..118382Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1575043694:118196..118382TCONS_00009447-exon-sc0000095-1575043694:118196..118382Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1491911889:118989..119729TCONS_00009447-exon-sc0000095-1491911889:118989..119729Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1510915933:118989..119729TCONS_00009447-exon-sc0000095-1510915933:118989..119729Clytia hemisphaericaexon
TCONS_00009447-exon-sc0000095-1575043694:118989..119729TCONS_00009447-exon-sc0000095-1575043694:118989..119729Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:112719..119729 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
496.198	460.571	343.131	262.549	1.85102	1.64349	2.31591	2.6062	4.31733	3.56085	2.08125	2.39936	11.6704	8.19349	3.54105	7.01099	0.0740964	0.166133	41.5561	55.0169	0.909588	0.336022	197.049	163.115	0.175519	0.511317	15.1752	18.4027	94.3424	102.657
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009447 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top