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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009495 ID=TCONS_00009495|Name=TCONS_00009495|organism=Clytia hemisphaerica|type=transcript|length=2580bp
AATGTATAATTTGTGAGAAAACATGATTTTTACAGACAGAAAAAATTTAG
TCGTAGAGATTTTGCTATAAAATATTGATATGTGAGATTTCTGAATGTTA
AGAATTTTGTGCTAATGACGTcaatgataaaataaaaactcaaAAGAATA
TAATTCAATCTCTCAATTGGTGACTTTTCGCTTTCTGTTTTTATTTAGAT
AAGCTAATAGcttttaagccttaaaaatgaagAGAATTTGCTGACAGGAG
CTGTttctattgatttgatttttatatatTGACAAAATATTGAATAAAGT
GGCGTAATGCTGAACTAGAGTTGCAGAATGCATATAAAGCAGACGAAATT
CAGGAGCTGACAAACCAACCGAAGCTCATCAAAAGAAATCATTAGCAGCA
AACTGAGAAACgagataattatttttctaaccATCAAAGAATTATTTGGA
CACCTGCTGGTCAAATACTACAACAACAAAATGATCGAGAAAAACGAGGA
AAAAGATCGAAAGATTATCGATAAAACATTCTCGCATCTAATCGATGAAG
AGGGGAATAATCACAAAACTTCTCGTGTCATGAAACTAGCTATCCCTGGG
CTGGACACAGTTAAAGAAATCACTAACATTTTATCCAAAGAAGAATGCCA
AGCTGTTATTGAGGGTACTTCAACATGTAAAGAGGGTTTTAGCCGACCGT
CAGCCTTTTCACCAAAAGATCGCGATTGTCATCGAATTCATACAGTTGAT
AAGACGATGAGTGAAATCATGATGCCCCGATTACGACCCTATCTTCCCGA
GATCGTTAAAATCGACGGAGTCCGATGGCAATTAAGCCGTTTCACACACC
ATTGGAGGTACGTTCGTTATTATCCCGGTGGGCACTTCAGTCCACATTAC
GACGGTGTCAAAATGAGCTCGGAGCCAGTACCCTGTTTATCAGTCTTCAC
GTTACAAATCTACCTGAACGGTATTGAAGATTTCACAGGAGGTGCAACAC
GCTTTTATCCTGACTTTGAGCCAGATAGAAAACCTTCTCAAGAAATCCCA
TATGGTCACGTGAGCAAGCTGTTTGATGATAAACTTTCTATGATCTCATT
TGATAAGGAAAAGTGTAGAAGACATGATGTCTTACCTGAAGAAGGTAAAG
CACTTTTGTTCAATCACGCATTGAATACGTTACATGATGGTGGCCCTGTT
CTTACGGGAACAAAATATATCATGCGAGGAGATATCTTGTATACAGCTTT
ACCTGAGGATATACACCTGCTCCCAACCATCACATCAAGCGTTAAAGATT
CTGAATTGAGCAGTCGTCATTGGTGTCCGTTTGCTGCAGCTAAACATGGA
ACGCGAAATCATATTGGTGAAGTGTGGTATTGCGTGTGTGCGGAAGATCA
GCATGGCGCAGATGTAGAGAAAAAGGAACGATGTTGGACTGAAGGTTTTG
GTGAAGAAACGAAACATGAGAAACCAAGAAGAGCTGTTCAAGAAAATGTC
AAGCAGCCAAAGGCTTTGGTGTTGATCAGTGGTAAACGAGCGTCTGGCAA
AGATTATATTGCCAACAAGATCAATGTTGCATTACAACAAGCTAATCTCA
ATGTTCATAGAGCAGCTCTGGGAAACATTAACAAAGAGCTGTATGCTGAG
TCTGTTGGTATCGATGTTAATCGATTGTTGACTGATAGAGCGTTCAAGGA
ACGCCATCGGATAGCTATGATTCAGCATCACGCTAACAAGAATGAGGAGG
ACCCAGAGTGGTGCGTCAAAGAGGTTATGTCTAAAGCAGAAACCTCAGAT
ATCCTATTGCTAAGCGATCTAAGAACTTTAGAAAACTTAGCCTGGTTTCA
AAAACAAGGAATTCCAACAGCGCTTATAAGGATTAATGCGAGTGATGAGG
CTAGACGAAAACGCGGTTGGGAGGCTTGTGATGTTAAAGATAATTTGAAG
ACAGAGGTGGATCTAGATGAGTTCACAGGTTGGACTGCTTTTTGGGATAA
CAGTGATGGTACGGATGCTGGTCATCAAGTCTTGAACGAATGGATTGAGC
ATACAGTTGTACCACGGGTCCTTAGtgctacagttgactctctctaattc
gatccttAAGGGACCAgggattttcttcgaattagagaattgtTCGAATC
ACAGAGAGTATTCTATACTACTTTAAAGAGGGGGCAATAttatagttcga
attacaggaaGATTCaaatagtagaggttcgaattagagagttgGCTGTA
TATGAAAACTATTTGATGATGTGGAGCATTGTAAAGTGAAGAAAAGCTTA
ATGATTGGTTAATAAAATACTGTTCTATTGGTAACGAAAAACTGGGAATG
AAATTATTGAAACAAagaatttctctaaaattttgtaattatcttttaac
attgttttgtatttttgatattttacagtACTATGGTttttaatgataaa
attttagcgCACACTATATTTTAGTTAAGTACACACATTATTACTAGTGA
TTATATCAACCGCATTATTTAAAGACACCGATCACTGTAAGAgtaaatgg
gccattccattttatatccattcaagGGGN Run BLAST on NCBI protein sequence of TCONS_00009495-protein >TCONS_00009495-protein ID=TCONS_00009495-protein|Name=TCONS_00009495-protein|organism=Clytia hemisphaerica|type=polypeptide|length=538bp
MIEKNEEKDRKIIDKTFSHLIDEEGNNHKTSRVMKLAIPGLDTVKEITNI
LSKEECQAVIEGTSTCKEGFSRPSAFSPKDRDCHRIHTVDKTMSEIMMPR
LRPYLPEIVKIDGVRWQLSRFTHHWRYVRYYPGGHFSPHYDGVKMSSEPV
PCLSVFTLQIYLNGIEDFTGGATRFYPDFEPDRKPSQEIPYGHVSKLFDD
KLSMISFDKEKCRRHDVLPEEGKALLFNHALNTLHDGGPVLTGTKYIMRG
DILYTALPEDIHLLPTITSSVKDSELSSRHWCPFAAAKHGTRNHIGEVWY
CVCAEDQHGADVEKKERCWTEGFGEETKHEKPRRAVQENVKQPKALVLIS
GKRASGKDYIANKINVALQQANLNVHRAALGNINKELYAESVGIDVNRLL
TDRAFKERHRIAMIQHHANKNEEDPEWCVKEVMSKAETSDILLLSDLRTL
ENLAWFQKQGIPTALIRINASDEARRKRGWEACDVKDNLKTEVDLDEFTG
WTAFWDNSDGTDAGHQVLNEWIEHTVVPRVLSATVDSL Run BLAST on NCBI transcript from alignment at sc0000095:550139..553583+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009495 ID=TCONS_00009495|Name=TCONS_00009495|organism=Clytia hemisphaerica|type=transcript|length=3445bp|location=Sequence derived from alignment at sc0000095:550139..553583+ (Clytia hemisphaerica)
AATGTATAATTTGTGAGAAAACATGATTTTTACAGACAGAAAAAATTTAG
TCGTAGAGATTTTGCTATAAAATATTGATATGTGAGATTTCTGAATGTTA
AGAATTTTGTGCTAATGACGTcaatgataaaataaaaactcaaAAGAATA
TAATTCAATCTCTCAATTGGTGACTTTTCGCTTTCTGTTTTTATTTAGAT
AAGCTAATAGcttttaagccttaaaaatgaagAGAATTTGCTGACAGGAG
CTGTttctattgatttgatttttatatatTGACAAAATATTGAATAAAGT
GGCGTAATGCTGAACTAGAGTTGCAGAATGCATATAAAGCAGACGAAATT
CAGGAGCTGACAAACCAACCGAAGCTCATCAAAAGAAATCATTAGCAGCA
AACTGAGAAACgagataattatttttctaaccATCAAAGAATTATTTGGG
TAAGTACATTATTATTCTGTTAATGAGGAAACCTAATGGACTCCTTTGCA
GAACTAGAAAATTTACAGGGTGAGTTTGTTTTGTCAGCCTAATGATGAAT
AATAcgcccccttctcatagacccactggaaaaattgcccaaaatatcgt
ccccggtggaaaattatcctccaagttttgtccccactgaaaataatcaa
ataaactaaccctcattgcaaaatattgtgctatttttcccatccccact
aaattttctgacttaaaaacaaaagaattgaaatccccagccataaaaaa
tatcaatccccatcgagtttcagttcgttatttttaccccaacTGGTTGG
CTGAAAAATCCTAACGAGTCTGTGAGAAGCGGGTGTAATAAAATGCGCTC
CTGCTATAAAGCAGATTTAGGTAGCCGAAAAAACTTGCAGTATCTACAAA
CCTTTCGTTTCAATTTAGTACGCCAGAATCCCAACACCTAAATTGAACAT
CCGTGTGTATGGTATGTTTATGTAAAATGTCATCTCAGCATCTCATCAAA
GCTTACAACTATAATTGACTAGAGCGATAAATGCAACAACACCCAATTAA
CTCTATACCCAGCTTTATTAAAACGATATGTGTCAATTCTTTATAAGCAA
TTTATTCTataagaaaaagattttggtaTTATCAAACTTAGGTTTAGTAA
AGCCCCTATGtacttactttttaaaagaagtaaatcatttttctaaaaaa
atgatgcaaaatttaagaattttctAATAACCAAAAGAGCTCTTTGATTT
TTAGCCCCCTGCTgcatatttcaatttattaattagtttcaattaatttt
ttctctcatttAAGACACCTGCTGGTCAAATACTACAACAACAAAATGAT
CGAGAAAAACGAGGAAAAAGATCGAAAGATTATCGATAAAACATTCTCGC
ATCTAATCGATGAAGAGGGGAATAATCACAAAACTTCTCGTGTCATGAAA
CTAGCTATCCCTGGGCTGGACACAGTTAAAGAAATCACTAACATTTTATC
CAAAGAAGAATGCCAAGCTGTTATTGAGGGTACTTCAACATGTAAAGAGG
GTTTTAGCCGACCGTCAGCCTTTTCACCAAAAGATCGCGATTGTCATCGA
ATTCATACAGTTGATAAGACGATGAGTGAAATCATGATGCCCCGATTACG
ACCCTATCTTCCCGAGATCGTTAAAATCGACGGAGTCCGATGGCAATTAA
GCCGTTTCACACACCATTGGAGGTACGTTCGTTATTATCCCGGTGGGCAC
TTCAGTCCACATTACGACGGTGTCAAAATGAGCTCGGAGCCAGTACCCTG
TTTATCAGTCTTCACGTTACAAATCTACCTGAACGGTATTGAAGATTTCA
CAGGAGGTGCAACACGCTTTTATCCTGACTTTGAGCCAGATAGAAAACCT
TCTCAAGAAATCCCATATGGTCACGTGAGCAAGCTGTTTGATGATAAACT
TTCTATGATCTCATTTGATAAGGAAAAGTGTAGAAGACATGATGTCTTAC
CTGAAGAAGGTAAAGCACTTTTGTTCAATCACGCATTGAATACGTTACAT
GATGGTGGCCCTGTTCTTACGGGAACAAAATATATCATGCGAGGAGATAT
CTTGTATACAGCTTTACCTGAGGATATACACCTGCTCCCAACCATCACAT
CAAGCGTTAAAGATTCTGAATTGAGCAGTCGTCATTGGTGTCCGTTTGCT
GCAGCTAAACATGGAACGCGAAATCATATTGGTGAAGTGTGGTATTGCGT
GTGTGCGGAAGATCAGCATGGCGCAGATGTAGAGAAAAAGGAACGATGTT
GGACTGAAGGTTTTGGTGAAGAAACGAAACATGAGAAACCAAGAAGAGCT
GTTCAAGAAAATGTCAAGCAGCCAAAGGCTTTGGTGTTGATCAGTGGTAA
ACGAGCGTCTGGCAAAGATTATATTGCCAACAAGATCAATGTTGCATTAC
AACAAGCTAATCTCAATGTTCATAGAGCAGCTCTGGGAAACATTAACAAA
GAGCTGTATGCTGAGTCTGTTGGTATCGATGTTAATCGATTGTTGACTGA
TAGAGCGTTCAAGGAACGCCATCGGATAGCTATGATTCAGCATCACGCTA
ACAAGAATGAGGAGGACCCAGAGTGGTGCGTCAAAGAGGTTATGTCTAAA
GCAGAAACCTCAGATATCCTATTGCTAAGCGATCTAAGAACTTTAGAAAA
CTTAGCCTGGTTTCAAAAACAAGGAATTCCAACAGCGCTTATAAGGATTA
ATGCGAGTGATGAGGCTAGACGAAAACGCGGTTGGGAGGCTTGTGATGTT
AAAGATAATTTGAAGACAGAGGTGGATCTAGATGAGTTCACAGGTTGGAC
TGCTTTTTGGGATAACAGTGATGGTACGGATGCTGGTCATCAAGTCTTGA
ACGAATGGATTGAGCATACAGTTGTACCACGGGTCCTTAGtgctacagtt
gactctctctaattcgatccttAAGGGACCAgggattttcttcgaattag
agaattgtTCGAATCACAGAGAGTATTCTATACTACTTTAAAGAGGGGGC
AATAttatagttcgaattacaggaaGATTCaaatagtagaggttcgaatt
agagagttgGCTGTATATGAAAACTATTTGATGATGTGGAGCATTGTAAA
GTGAAGAAAAGCTTAATGATTGGTTAATAAAATACTGTTCTATTGGTAAC
GAAAAACTGGGAATGAAATTATTGAAACAAagaatttctctaaaattttg
taattatcttttaacattgttttgtatttttgatattttacagtACTATG
GTttttaatgataaaattttagcgCACACTATATTTTAGTTAAGTACACA
CATTATTACTAGTGATTATATCAACCGCATTATTTAAAGACACCGATCAC
TGTAAGAgtaaatgggccattccattttatatccattcaagGGGN Coding sequence (CDS) from alignment at sc0000095:550139..553583+ >TCONS_00009495 ID=TCONS_00009495|Name=TCONS_00009495|organism=Clytia hemisphaerica|type=CDS|length=1617bp|location=Sequence derived from alignment at sc0000095:550139..553583+ (Clytia hemisphaerica)
ATGATCGAGAAAAACGAGGAAAAAGATCGAAAGATTATCGATAAAACATT
CTCGCATCTAATCGATGAAGAGGGGAATAATCACAAAACTTCTCGTGTCA
TGAAACTAGCTATCCCTGGGCTGGACACAGTTAAAGAAATCACTAACATT
TTATCCAAAGAAGAATGCCAAGCTGTTATTGAGGGTACTTCAACATGTAA
AGAGGGTTTTAGCCGACCGTCAGCCTTTTCACCAAAAGATCGCGATTGTC
ATCGAATTCATACAGTTGATAAGACGATGAGTGAAATCATGATGCCCCGA
TTACGACCCTATCTTCCCGAGATCGTTAAAATCGACGGAGTCCGATGGCA
ATTAAGCCGTTTCACACACCATTGGAGGTACGTTCGTTATTATCCCGGTG
GGCACTTCAGTCCACATTACGACGGTGTCAAAATGAGCTCGGAGCCAGTA
CCCTGTTTATCAGTCTTCACGTTACAAATCTACCTGAACGGTATTGAAGA
TTTCACAGGAGGTGCAACACGCTTTTATCCTGACTTTGAGCCAGATAGAA
AACCTTCTCAAGAAATCCCATATGGTCACGTGAGCAAGCTGTTTGATGAT
AAACTTTCTATGATCTCATTTGATAAGGAAAAGTGTAGAAGACATGATGT
CTTACCTGAAGAAGGTAAAGCACTTTTGTTCAATCACGCATTGAATACGT
TACATGATGGTGGCCCTGTTCTTACGGGAACAAAATATATCATGCGAGGA
GATATCTTGTATACAGCTTTACCTGAGGATATACACCTGCTCCCAACCAT
CACATCAAGCGTTAAAGATTCTGAATTGAGCAGTCGTCATTGGTGTCCGT
TTGCTGCAGCTAAACATGGAACGCGAAATCATATTGGTGAAGTGTGGTAT
TGCGTGTGTGCGGAAGATCAGCATGGCGCAGATGTAGAGAAAAAGGAACG
ATGTTGGACTGAAGGTTTTGGTGAAGAAACGAAACATGAGAAACCAAGAA
GAGCTGTTCAAGAAAATGTCAAGCAGCCAAAGGCTTTGGTGTTGATCAGT
GGTAAACGAGCGTCTGGCAAAGATTATATTGCCAACAAGATCAATGTTGC
ATTACAACAAGCTAATCTCAATGTTCATAGAGCAGCTCTGGGAAACATTA
ACAAAGAGCTGTATGCTGAGTCTGTTGGTATCGATGTTAATCGATTGTTG
ACTGATAGAGCGTTCAAGGAACGCCATCGGATAGCTATGATTCAGCATCA
CGCTAACAAGAATGAGGAGGACCCAGAGTGGTGCGTCAAAGAGGTTATGT
CTAAAGCAGAAACCTCAGATATCCTATTGCTAAGCGATCTAAGAACTTTA
GAAAACTTAGCCTGGTTTCAAAAACAAGGAATTCCAACAGCGCTTATAAG
GATTAATGCGAGTGATGAGGCTAGACGAAAACGCGGTTGGGAGGCTTGTG
ATGTTAAAGATAATTTGAAGACAGAGGTGGATCTAGATGAGTTCACAGGT
TGGACTGCTTTTTGGGATAACAGTGATGGTACGGATGCTGGTCATCAAGT
CTTGAACGAATGGATTGAGCATACAGTTGTACCACGGGTCCTTAGtgcta
cagttgactctctctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00009495-exon-sc0000095-1491911889:550139..550587 | TCONS_00009495-exon-sc0000095-1491911889:550139..550587 | Clytia hemisphaerica | exon |
| TCONS_00009495-exon-sc0000095-1510915933:550139..550587 | TCONS_00009495-exon-sc0000095-1510915933:550139..550587 | Clytia hemisphaerica | exon |
| TCONS_00009495-exon-sc0000095-1575043694:550139..550587 | TCONS_00009495-exon-sc0000095-1575043694:550139..550587 | Clytia hemisphaerica | exon |
| TCONS_00009495-exon-sc0000095-1491911889:551453..553583 | TCONS_00009495-exon-sc0000095-1491911889:551453..553583 | Clytia hemisphaerica | exon |
| TCONS_00009495-exon-sc0000095-1510915933:551453..553583 | TCONS_00009495-exon-sc0000095-1510915933:551453..553583 | Clytia hemisphaerica | exon |
| TCONS_00009495-exon-sc0000095-1575043694:551453..553583 | TCONS_00009495-exon-sc0000095-1575043694:551453..553583 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000095 | supercontig | sc0000095:550139..553583 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0031418 | L-ascorbic acid binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
| GO:0016491 | oxidoreductase activity |
| GO:0004631 | phosphomevalonate kinase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
| GO:0006695 | cholesterol biosynthetic process |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005737 | cytoplasm |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006695 |
cholesterol biosynthetic process |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| cellular_component |
GO:0005737 |
cytoplasm |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0031418 |
L-ascorbic acid binding |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
| molecular_function |
GO:0004631 |
phosphomevalonate kinase activity |
Blast
BLAST of TCONS_00009495 vs. Swiss-Prot (Human)
Match: PMVK (Phosphomevalonate kinase OS=Homo sapiens GN=PMVK PE=1 SV=3) HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-17 Identity = 50/157 (31.85%), Postives = 85/157 (54.14%), Query Frame = 1
Query: 1507 PKALVLISGKRASGKDYIANKINVALQQANLNVHRAALGNINKELYAESVGIDVNRLLTDRAFKERHRIAMIQHHANKNEEDPEWCVKEVMSKAETSDILLLSDLRTLENLAWFQKQ-GIPTALIRINASDEARRKRGWEACDVKDNLKTEVDLDEF 1974
P+ ++L SGKR SGKD++ + L V R L KE YA+ G++ RLL +KE R MI+ K + DP + ++++ + + I L+SD R + ++ WF++ G T +R+ A +++R++RGW D+ ++E LD F
Sbjct: 8 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLR--LSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGFFCRKIV-EGISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFTPGVDDAESECGLDNF 161
The following BLAST results are available for this feature:
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