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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009711 ID=TCONS_00009711|Name=TCONS_00009711|organism=Clytia hemisphaerica|type=transcript|length=2670bpRun BLAST on NCBI protein sequence of TCONS_00009711-protein >TCONS_00009711-protein ID=TCONS_00009711-protein|Name=TCONS_00009711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=730bp LNPCDSNPCHNHGICVPRGELYQCQCVNGYGGNNCDDPHPCLPNPCLHGGRun BLAST on NCBI transcript from alignment at sc0000098:328125..342485+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009711 ID=TCONS_00009711|Name=TCONS_00009711|organism=Clytia hemisphaerica|type=transcript|length=14361bp|location=Sequence derived from alignment at sc0000098:328125..342485+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000098:328125..342485+ >TCONS_00009711 ID=TCONS_00009711|Name=TCONS_00009711|organism=Clytia hemisphaerica|type=CDS|length=24123bp|location=Sequence derived from alignment at sc0000098:328125..342485+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009711 vs. Swiss-Prot (Human)
Match: NOTC1 (Neurogenic locus notch homolog protein 1 OS=Homo sapiens GN=NOTCH1 PE=1 SV=4) HSP 1 Score: 191.045 bits (484), Expect = 1.572e-49 Identity = 151/455 (33.19%), Postives = 197/455 (43.30%), Query Frame = 2
Query: 2 LNPCDSNPCHNHGICVPRGELYQCQCVNGYGGNNCDDP-HPCLPNPCLHGGKCLLGRNTHGYLCDCTTEWRGQNCESRDLCSIHNPCLHGGVCVNSKDEDNKVTCKCRARFSGDRCENDKCANCDINAYCHHGN----------CMCKPEFVGNGYVCKAIGDVCAPNPCENGGQCRHGVDGKLFSCECPHGFLGIRCELPNP-CANSPCLHNGACIDESSSKEKGILMADRHDYKCFCTPGYRGKNCEETNLAACSSGPCKNNGFCFDASSESHKRHLAHPDDYECFCPNGFAGKDCEYEHYPCVSSPCMNGGHCLDAQKLPAVSFDAHGYKCSCNHGFAGR-------NCEVTVEGLGACHSDPCMHDGRCVDIINTNDPDLHFDYDHEFKCFCSALYSGILCEVPYPACHSQPCQHNGTCFDKTTNMEILYDDTGYECKCSPGFEGKNCERQ 1309
+N C SNPC N G C+ Y+C C+ Y G C+ PC P+PC +GG+C + + C C T W+GQ CE + +PC HG C N+ C C+A +SG CE D +C N CH+G C C P F G C+ + CA +PC NG C VD ++C CP GF GI CE P C S C + G C+D +S + C C PG+ G C+ ++ C S PC + G C D Y C CP G+ G +C+ + C SSPC NGG C Y+C C G+ G +CEV + G + C H G CVD NT+ C C A Y+G CE C PCQ+ TC D GY CKC G+ G NC +
Sbjct: 792 INECASNPCLNQGTCIDDVAGYKCNCLLPYTGATCEVVLAPCAPSPCRNGGECRQSEDYESFSCVCPTGWQGQTCEVDINECVLSPCRHGASCQNTH---GGYRCHCQAGYSGRNCETDI-DDCRPNP-CHNGGSCTDGINTAFCDCLPGF--RGTFCEEDINECASDPCRNGANCTDCVDS--YTCTCPAGFSGIHCENNTPDCTESSCFNGGTCVDGINS------------FTCLCPPGFTGSYCQH-DVNECDSQPCLHGGTCQDGCGS-----------YRCTCPQGYTGPNCQNLVHWCDSSPCKNGGKCWQTHTQ---------YRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCVDAGNTH------------HCRCQAGYTGSYCEDLVDECSPSPCQNGATCTDYL---------GGYSCKCVAGYHGVNCSEE 1183 HSP 2 Score: 184.496 bits (467), Expect = 1.857e-47 Identity = 167/510 (32.75%), Postives = 218/510 (42.75%), Query Frame = 2
Query: 8 PCDSNPCHNHGICVPRGEL-YQCQCVNGYGGNNCDD-PHPCLPNPCLHGGKCLLGRNTHGYLCDCTTEWRGQNC-ESRDLCSIH-NPCLHGG-----------VCVNSKD----EDNKVTCKCRARFSGDRCE---------------------NDKC--------ANCDINAYCHHGNCMCKPEFVGNGYVCKAIGDVCA--PNPCENGGQCRHGVDGKLFSCECPHGFLGIRCEL-PNPCANSPCLHNGACIDESSSKEKGILMADRHDYKCFCTPGYRGKNCEETNLAACSSGPCKNNGFCFDASSESHKRHLAHPDDYECFCPNGFAGKDCEYEHYPCVSSPCMNGGHCLDAQKLPAVSFDAHGYKCSCNHGFAGRNCEVTVEGLGACHSDPCMHDGRCVDIINTNDPDLHFDYDHEFKCFCSALYSGILCEVPYPACHSQPCQHNGTCFDK-----------TT--NMEILYDD---------------TGYECKCSPGFEGKNC 1300
PC +PC N G C P G++ ++C C+ G+ G NC++ C N C +GG C+ G NT Y C C EW GQ C E D C + N C +GG VCVN +N C A F G C ND C +NCD N C C + G C D C+ NPCE+ G+C + + F C+C G+ G RCE+ N C ++PC ++ C+D+ +++C C PGY G +CE N C+S PC +NG C D +E ++C CP GF G C+Y+ C S+PC NG CLD Y C C G+ G +CEV ++ C DPC H G C D + T F C C Y+G CE C SQPC+H GTC D+ TT N EI DD GYEC C PG+ G C
Sbjct: 221 PCSPSPCQNGGTCRPTGDVTHECACLPGFTGQNCEENIDDCPGNNCKNGGACVDGVNT--YNCRCPPEWTGQYCTEDVDECQLMPNACQNGGTCHNTHGGYNCVCVNGWTGEDCSENIDDCASAACFHGATCHDRVASFYCECPHGRTGLLCHLNDACISNPCNEGSNCDTNPVNGKAICTCPSGYTGP--ACSQDVDECSLGANPCEHAGKCINTLGS--FECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIG------------EFQCICMPGYEGVHCE-VNTDECASSPCLHNGRCLDKINE-----------FQCECPTGFTGHLCQYDVDECASTPCKNGAKCLDGPNT---------YTCVCTEGYTGTHCEVDID---ECDPDPC-HYGSCKDGVAT------------FTCLCRPGYTGHHCETNINECSSQPCRHGGTCQDRDNAYLCFCLKGTTGPNCEINLDDCASSPCDSGTCLDKIDGYECACEPGYTGSMC 675 HSP 3 Score: 164.466 bits (415), Expect = 3.778e-41 Identity = 146/472 (30.93%), Postives = 213/472 (45.13%), Query Frame = 2
Query: 2 LNPCDSNPCHNHGICVPRGELYQCQCVNGYGGNNCD-DPHPCLPNPCLHGGKCLLGRNTHGYLCDCTTEWRGQNCE-SRDLCSIHNPCLHGGVCVNSKDEDNKVTCKCRARFSGDRCENDKCANCDINAYCHHGNC---------MCKPEFVGNGYVCKAIGDVCAPNPCENGGQCRHGVDGKLFSCECPHGFLGIRCEL-PNPCANSPCLHNGACIDESSSKEKGILMADRHDYKCFCTPGYRGKNCEETNLAACSSGPCKNNGFCFDASSESHKR-----------------------HLAHPDD---YECFCPNGFAGKDCEYEHYPCVSSPCMNGGHCLDAQKLPAVSFDAHGYKCSCNHGFAGRNCEVTVEGLGACHSDPCMHDGRCVDIINTNDPDLHFDYDHEFKCFCSALYSGILCEVPYPACHSQPCQHNGTCFDKTTNMEILYDDTGYECKCSPGFEGKNCE 1303
+N C SNPC N C+ + +QC C+ GY G +C+ + C +PCLH G+CL N + C+C T + G C+ D C+ PC +G C+ D N TC C ++G CE D CD + CH+G+C +C+P + G + C+ + C+ PC +GG C+ + L C C G G CE+ + CA+SPC +G C+D+ Y+C C PGY G C N+ C+ PC N G C D + R H A D Y+C C G++G +C+ + C S+PC+NGG C D GY C+C GF+G NC+ + C S+PC++ G C+D + +KC C Y+G CEV C PC++ G C D + C C G++G+ CE
Sbjct: 453 VNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINE--FQCECPTGFTGHLCQYDVDECA-STPCKNGAKCL---DGPNTYTCVCTEGYTGTHCEVDI-DECDPDP-CHYGSCKDGVATFTCLCRPGYTG--HHCETNINECSSQPCRHGGTCQDRDNAYL--CFCLKGTTGPNCEINLDDCASSPC-DSGTCLDKIDG------------YECACEPGYTGSMCN-INIDECAGNPCHNGGTCEDGINGFTCRCPEGYHDPTCLSEVNECNSNPCVHGACRDSLNGYKCDCDPGWSGTNCDINNNECESNPCVNGGTCKDMTS---------GYVCTCREGFSGPNCQTNIN---ECASNPCLNQGTCIDDVAG------------YKCNCLLPYTGATCEVVLAPCAPSPCRNGGECRQSE-------DYESFSCVCPTGWQGQTCE 867 HSP 4 Score: 154.836 bits (390), Expect = 3.902e-38 Identity = 146/495 (29.49%), Postives = 209/495 (42.22%), Query Frame = 2
Query: 2 LNPCDSNPCHNHGICVPRGELYQCQCVNGYGGNNCDDPHPCLPNPCLHGGKCLLGRNTHGYLCDCTTEWRGQNC-ESRDLCSI-HNPCLHGGVCVNSKDEDNKVTCKCRARFSGDRCEND--KCAN--CDINAYC----HHGNCMCKPEFVGNGYVCKAIGDVCAPNPCENGGQCRHGVDGKLFSCECPHGFLGIRCEL-PNPCANSPCLHNGACIDESSSKE-------------------------KGILMADRHDYKCFCTPGYRGKNCEETNLAACSSGPCKNNGFCFDASSESHKRHLAHPDDYECFCPNGFAGKDCEYEHYPCVSSPCMNGGHCLDAQKLPAVSFDAHGYKCSCNHGFAGRNCEVTVEGLGACHSDPCMHDGRCVDIIN----------------------TNDPDLH---FDYDHEFKCFCSALYSGILCEVPYPACHSQPCQHNGTCFDKTTNMEILYDDTGYECKCSPGFEGKNCE 1303
++ C S C + C R + C+C +G G C C+ NPC G C +C C + + G C + D CS+ NPC H G C+N+ C+C ++G RCE D +C + C +A C C+C P + G C+ D CA +PC + G+C ++ F CECP GF G C+ + CA++PC + C+D ++ G + C C PGY G +C ETN+ CSS PC++ G C D + Y CFC G G +CE C SSPC + G CLD GY+C+C G+ G C + ++ C +PC + G C D IN ++P +H D + +KC C +SG C++ C S PC + GTC D T +GY C C GF G NC+
Sbjct: 336 IDDCASAACFHGATCHDRVASFYCECPHGRTGLLCHLNDACISNPCNEGSNCDTNPVNGKAICTCPSGYTGPACSQDVDECSLGANPCEHAGKCINTL---GSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGY--EGVHCEVNTDECASSPCLHNGRCLDKIN--EFQCECPTGFTGHLCQYDVDECASTPCKNGAKCLDGPNTYTCVCTEGYTGTHCEVDIDECDPDPCHYGSCKDGVATFTCLCRPGYTGHHC-ETNINECSSQPCRHGGTCQDRDNA-----------YLCFCLKGTTGPNCEINLDDCASSPC-DSGTCLD---------KIDGYECACEPGYTGSMCNINID---ECAGNPCHNGGTCEDGINGFTCRCPEGYHDPTCLSEVNECNSNPCVHGACRDSLNGYKCDCDPGWSGTNCDINNNECESNPCVNGGTCKDMT---------SGYVCTCREGFSGPNCQ 789 HSP 5 Score: 153.68 bits (387), Expect = 9.165e-38 Identity = 153/513 (29.82%), Postives = 211/513 (41.13%), Query Frame = 2
Query: 2 LNPCDSNPCHNHGICVPRGELYQCQCVNGYGGNNCD-DPHPCLPNPCLHGGKCLLGRNTHGYLCDCTTEWRGQNCESRDLCSIHNPCLHGGVCVNSKDEDNKVTCKCRARFSGDRCENDKC----ANCDINAYCHHG----NCMCKPEFVGNGYVCKAIGDVCAPNPCENGGQCRHGVDGKLFSCECPHGFLGIRCE-LPNPCANSPCLHNGACID-------------------------ESSSKEKGILMADR-----------HDYKCFCTPGYRGKNCEETNLAACSSGPCKNNGFCFDASSESHKRHLAHPDDYECFCPNGFAGKDCEYEHYPCVSSPCMNGGHCLDAQKLPAVSFDAHGYKCSCNHGFAGRNCEVTVEGLG-----ACHSDPCMHDGRCVDIIN-----------------------TNDPDLHFDYD-----HEFKCFCSALYSGILCEVPYPACHSQPCQHNGTCFDKTTNMEILYDDTGYECKCSPGFEGKNCE 1303
+N C +PC + C Y+C C GY G NC+ D C PNPC +GG C G NT CDC +RG CE +PC +G C + D TC C A FSG CEN+ ++C C G C+C P F G+ C+ + C PC +GG C+ G + C CP G+ G C+ L + C +SPC + G C E +++ +G+ +A + + C C GY G CE+ + CS PC+N C D + Y C C G+ G +C E C+S PC NGG CLD LP + YKCSC G G +CE+ V+ S C ++G CVD + +N D + ++F C C A ++G CE C +PC++ GTC + G+ CKC GFEG CE
Sbjct: 870 INECVLSPCRHGASCQNTHGGYRCHCQAGYSGRNCETDIDDCRPNPCHNGGSCTDGINT--AFCDCLPGFRGTFCEEDINECASDPCRNGANCTDCVD---SYTCTCPAGFSGIHCENNTPDCTESSCFNGGTCVDGINSFTCLCPPGFTGS--YCQHDVNECDSQPCLHGGTCQDGCGS--YRCTCPQGYTGPNCQNLVHWCDSSPCKNGGKCWQTHTQYRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCVDAGNTHHCRCQAGYTGSYCEDL-VDECSPSPCQNGATCTD-----------YLGGYSCKCVAGYHGVNCSEEIDECLSHPCQNGGTCLD---LP------NTYKCSCPRGTQGVHCEINVDDCNPPVDPVSRSPKCFNNGTCVDQVGGYSCTCPPGFVGERCEGDVNECLSNPCDARGTQNCVQRVNDFHCECRAGHTGRRCESVINGCKGKPCKNGGTCAVASNTAR------GFICKCPAGFEGATCE 1346 HSP 6 Score: 144.436 bits (363), Expect = 6.613e-35 Identity = 142/480 (29.58%), Postives = 199/480 (41.46%), Query Frame = 2
Query: 5 NPCDSNPCHNHGIC--VPRGEL--YQCQCVNGYGGNNCDDP--HPCLPNPCLHGGKCLLGRNTHGYLCDCTTEWRGQNCESRDLCSIHNPCLHGGVCVNSKDEDNKVTCKCRARFSGDRCENDKCANCDINAYCHHG----------NCMCKPEFVGNGYVCKAIGDVCAPNPCENGGQCRHGVDGKLFSCECPHGFLGIRCEL-PNPCANSPCLHNGACIDESSS----------------------------KEKGILMADRHDYKCFCTPGYRGKNCEETNLAACSSGPCKNNGFCFDASSESHKRHLAHPDDYECFCPNGFAGKDCEYEHYPCVSSPCMNGGHCLDAQKLPAVSFDAHGYKCSCNHGFAGRNCEVTVE--GLGACHSDPCMHDGRCVDIINTNDPDLHFDYDHEFKCFCSALYSGILCEVPYPACHSQPCQHNGTCFDKTTNMEILYDDTGYECKCSPGFEGKNCE 1303
NPC S PC N G C V R + Y C C G+ G C P + CL NPC +GG C L T Y C C W G++C+ D C+ NPC +GG C+ + C C F G C D C HG C+C+ G C+ C+P+PC+NGG CR D C C GF G CE + C + C + GAC+D ++ + G Y C C G+ G++C E N+ C+S C + C D + + C CP+G G C C+S+PC G +C D + + C+C G+ G C V+ LGA +PC H G+C++ + + F+C C Y+G CE+ C S PCQ++ TC D+ ++C C PG+EG +CE
Sbjct: 61 NPCLSTPCKNAGTCHVVDRRGVADYACSCALGFSGPLCLTPLDNACLTNPCRNGGTCDLLTLTE-YKCRCPPGWSGKSCQQADPCA-SNPCANGGQCL---PFEASYICHCPPSFHGPTCRQDVNECGQKPGLCRHGGTCHNEVGSYRCVCRATHTGPN--CERPYVPCSPSPCQNGGTCRPTGD-VTHECACLPGFTGQNCEENIDDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCTEDVDECQLMPNACQNGGTCHNTHGGYNCVCVNGWTGEDCSE-NIDDCASAACFHGATCHDRVAS-----------FYCECPHGRTGLLCHLNDA-CISNPCNEGSNC-DTNPVNGKAI------CTCPSGYTGPACSQDVDECSLGA---NPCEHAGKCINTLGS------------FECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGE---------FQCICMPGYEGVHCE 488 HSP 7 Score: 135.961 bits (341), Expect = 3.555e-32 Identity = 132/445 (29.66%), Postives = 189/445 (42.47%), Query Frame = 2
Query: 2 LNPCDSNPCHNHGICVPRGELYQCQCVNGYGGNNCDD-PHPCLPNPCLHGGKCLLGRNTHG-YLCDCTTEWRGQNCE----------SRDLCSIHNPCLHGGVCVNSKDEDNKVTCKCRARFSGDRCEN--DKCAN--CDINAYC--HHGNCMCKPEFVGNGYVCKAIGDVCAPNPCENGGQCRHGVDGKLFSCECPHGFLGIRCEL--------PNPCANSP-CLHNGACIDE----SSSKEKGIL------------------------MADRHDYKCFCTPGYRGKNCEETNLAACSSGPCKNNGFCFDASSESHKRHLAHPDDYECFCPNGFAGKDCEYEHYPCVSSPCMNGGHCLDAQKLPAVSFDAHGYKCSCNHGFAGRNCEVTVEG--LGACHSDPCMHDGRCVDIINTNDPDLHFDYDHEFKCFCSALYSGILCEV 1165
+N CDS PC + G C Y+C C GY G NC + H C +PC +GGKC TH Y C+C + W G C+ R + C HGG+CV D N C+C+A ++G CE+ D+C+ C A C + G CK +G C D C +PC+NGG C + + C CP G G+ CE+ +P + SP C +NG C+D+ S + G + + +D+ C C G+ G+ CE + C PCKN G C AS+ + + C CP GF G CE + C S C+NGG C+ + P C C F G C+ LG +PC + G C +P + ++C C A ++G+LC +
Sbjct: 1022 VNECDSQPCLHGGTCQDGCGSYRCTCPQGYTGPNCQNLVHWCDSSPCKNGGKCW---QTHTQYRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCV---DAGNTHHCRCQAGYTGSYCEDLVDECSPSPCQNGATCTDYLGGYSCKCVAGYHGVNCSEEIDECLSHPCQNGGTCLDLPN--TYKCSCPRGTQGVHCEINVDDCNPPVDPVSRSPKCFNNGTCVDQVGGYSCTCPPGFVGERCEGDVNECLSNPCDARGTQNCVQRVNDFHCECRAGHTGRRCESV-INGCKGKPCKNGGTCAVASNTARG--------FICKCPAGFEGATCENDARTCGSLRCLNGGTCISGPRSPT---------CLCLGPFTGPECQFPASSPCLGG---NPCYNQGTC-------EPTSESPF---YRCLCPAKFNGLLCHI 1427 The following BLAST results are available for this feature:
BLAST of TCONS_00009711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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