|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009802 ID=TCONS_00009802|Name=TCONS_00009802|organism=Clytia hemisphaerica|type=transcript|length=1524bp
TACAACTCACCTAGAAGAGAACAAAACAGTGGGTCGGAATAACAATTAGG
AAATATGACAATACGTTACGTTGAGGTAAGAAGCGATCATTGGTCTGATG
CTCCTTCTGCTATCATTGATAAACTCAAAAATCTTGGTGTGAAGAAGGGT
CAGATAGTATGGATTGATGCCCATTGCGCACATATTCATGATCAAGCAAT
TATTAGTGCATACTGGGATGACCACATTGCAAGCGAAGATCCACTTGACA
TTCGCTTTtatttgcaaaattatgacGAAAGTTGGGCAAGCGAGTACGAA
AATGCTGTGGATTTTGCCTCGAAGATACAACCACAAAACCTTATTTCGAT
TACTGGTAGTGgcaatataaaaaataaaagcgTCTGCATTGTCTTTTATT
ACGACGGTCCTGAGGCGAACCCACGACAAAATATCAGATGGAAAGAATCT
AGGTCAAGTAATTGGTCGAGTGTCGCAAATGACATCATTAAAGAATTGAA
GAATGCTGGTGCGAAACAAGGCCAAATAATTGGAATTGACGCACATGCCA
ACACCGATAAGGCCAATCCTACAATTCAAGTAGGTTTTTGGAATGCTTCC
CTTCCTGGTAATGGTGATTTGAATATAGAAtacaaaaTGAGGAATGACAA
AGATAGCTATGATACGCACTACAAATGGGCATGTAACTTAATCGATTCCC
AGAACGGAAACCCGAATATATATTCAGTCACTACCAGTCAAAATGATCAT
AATTCTGCAGCCACATTCGTCTATGGGGAACCAGACGAAATCTTGAGCAT
TGATTATGATTTGGATAATGGAAAAATTACGGATAGTAAACCAGAAGTGC
TTGAAACAATGGATAATAACAATGATTCACCCGCCGATCAAATCCTGACT
TTTACCTACAAAGAAACCACTGGCACAAGCACCGAAAACACATCAAGTTT
CAGTAATGAAGTTGGAGCATCATTCAAAGTCGGCACGAAGTTCTCCACCG
GGATTCCATTTATTGCCGAGGGCCAAATATCAATGGAATTGACGGCGTTA
TACAACCATACTTGGGGTAAAACAAAATCAATCTCAAATGATTTCAGTAC
AAGCTCTGCTGCCACAGCTTCTGTTAAAGCAAATCCATATACTAAAATCA
CATGTGCCTTCAGTGTTCAAAAATCAGATATGGATGTCCCTTATACAATG
ACCATGAAATCTGGGAAGAAATCCTCTGGAACGTGGAAGGGCGTGAACTG
CTGGGATTTCAAGGCTACTTTTAAAGAGGAACCATTGGAAGAGACTTCTT
GAAATCTTGTAGAGATTTTTAAACTTCACATCGCATCAACCTCCCTATTA
TCATGTTTTATCATATCATTTTGTTTTATCCATTTTCATACGTCATATTC
ACACCATCTCACCAACCTTCATATATTACATTATGTTACGTTTCATGTTT
ATGTTACGTTAAGAACGCGTTACGTTACAAATACCTAAAGTATACGTCCA
CTCAAATGAACTTTATTGTTTCAG Run BLAST on NCBI protein sequence of TCONS_00009802-protein >TCONS_00009802-protein ID=TCONS_00009802-protein|Name=TCONS_00009802-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp
MTIRYVEVRSDHWSDAPSAIIDKLKNLGVKKGQIVWIDAHCAHIHDQAII
SAYWDDHIASEDPLDIRFYLQNYDESWASEYENAVDFASKIQPQNLISIT
GSGNIKNKSVCIVFYYDGPEANPRQNIRWKESRSSNWSSVANDIIKELKN
AGAKQGQIIGIDAHANTDKANPTIQVGFWNASLPGNGDLNIEYKMRNDKD
SYDTHYKWACNLIDSQNGNPNIYSVTTSQNDHNSAATFVYGEPDEILSID
YDLDNGKITDSKPEVLETMDNNNDSPADQILTFTYKETTGTSTENTSSFS
NEVGASFKVGTKFSTGIPFIAEGQISMELTALYNHTWGKTKSISNDFSTS
SAATASVKANPYTKITCAFSVQKSDMDVPYTMTMKSGKKSSGTWKGVNCW
DFKATFKEEPLEETS Run BLAST on NCBI transcript from alignment at sc0000099:176909..182329+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009802 ID=TCONS_00009802|Name=TCONS_00009802|organism=Clytia hemisphaerica|type=transcript|length=5421bp|location=Sequence derived from alignment at sc0000099:176909..182329+ (Clytia hemisphaerica)
TACAACTCACCTAGAAGAGAACAAAACAGTGGGTCGGAATAACAATTAGG
AAATATGACAATACGTTACGTTGAGGTAAGAAGCGATCATTGGTCTGATG
CTCCTTCTGCTATCATTGATAAACTCAAAAATCTTGGTGTGAAGAAGGGT
CAGATAGTATGGATTGATGCCCATTGCGCACATATTCATGATCAAGCAAT
TATTAGTGCATACTGGGATGACCACATTGCAAGCGAAGATCCACTTGACA
TTCGCTTTtatttgcaaaattatgacGAAAGTTGGGCAAGCGAGTACGAA
AATGCTGTGGATTTTGCCTCGAAGATACAACCACAAAACCTTATTTCGAT
TACTGGTAGTGgcaatataaaaaataaaagcgTCTGCATTGTCTTTTATT
ACGACGGTCCTGAGGCGAACCCACGACAAAATATCAGATGGAAAGAATCT
AGGTCAAGTAATTGGTCGAGTGTCGCAAATGACATCATTAAAGAATTGAA
GAATGCTGGTGCGAAACAAGGCCAAATAATTGGAATTGACGCACATGCCA
ACACCGATAAGGCCAATCCTACAATTCAAGTAGGTTTTTGGAATGCTTCC
CTTCCTGGTAATGGTGATTTGAATATAGAAtacaaaagtgagtcttttag
ttttaaaattctttgtttttgtttcacaATTGCGATTAAAATTCTGCCCT
TATTATCAGCTCTTATTAGCTGACAAAAAGAAACGAGGTGTACAGCTTAG
CACACACAGAAAACATCTTGATATCACTTGCTTACTTCGTAGGAACTAAT
TACCGAAAGGTATATGGCTGTCTATAAGAGTTATTGATCTGATTCTTATA
AACTAGATGCTTATAAGAACAATTAACATGCTCATACTGTGTACTGTCCC
TTGTTTACTTTGTAAGAGCTAATTAACGAAAGATATATGGTTGTTTATCA
AGAAATATTGATGACATGAATAATCGTCTGCTCAGGCAAATTAAGGCACG
TCCAAATTTTTCTTTTAATTTTTTATCACCGTTTCCACTTGTCATAGCAT
ATCACTTCATACATCGAAAGAAGCCTATTGGAGTGTAGATCACTGGCCAT
AATTAATTTTTCCCCCCAAAAAAAGATATCTTTTTTGGGTGAAAAAATTA
ATAATGGCACACCAATTTTCACTTTACTGTATCCCTCTTTAAAGGAATTC
TACCAGGTGACCCACGAAAAAATTCATTATACTAGCCATAACTTTCATTA
AAGGTGCCACCGCAGCAAAGCGAACACACAGAGTTGAATTTgcgttcaaa
aggaatgatcttagccctacagtaatttttgttaagagtgacctctcatc
tgagacaaaattctttcaaatgctaacaaatctgtcaagggagtgattta
cagtctacttagagtgacatccgtgccttgtcttacacgttttttataag
aacaatttcataagaatacaaGGCTgcaatttggccaaaacctaagaaca
aattaagaagaatctgaacctctgatttcagaaattactgagaaatacat
gtttccattttaattaatattgacatttaaggctgaaaaagcAGCCCAGC
Ctgaatcatatgacttactggtttttccaataaaaagcgtatatatctga
agatactgctcttcacatgtgattttactaatgtacacgtttagtaacat
aactgttcgaatactttgagtatagtaatatttttaccttatgaagagcg
cttaataactacttgttgTATGGTATAAAAAGGAAAAGTACGACCCCTAG
CATTAATACAGCGACGAGACCTAGAAATAATTCCATCGAAAGCGTCTCTG
ATCATTTGCTGATCTAAGTTGTTACAAGCTCTGACGATTGCTGCTTTCAA
CTGATTGATGGTTTGGGGTTGCTGATTGACAGGAACATTCCAAATGGTGT
GTTTTAAATGGCCCCACAGAAAAAAAccgcttatttttttcttaatgaAA
CTTTTAAGACAAAGAAATAGCAAATGATCAAAGGAAAGATGTTTGTTCTG
ATTCAAATTTGATACTGTCTTTTATGAcgtttttcaactgttttttataa
tgacttttgactttatacctccatatctcgataactacttttccaaaatt
aaaaaatgacacatcaaaatttaagtttgcctttcctctttatcatgaaa
aaagaattcagttaaaattcaattctttttcggacacagttaccctccaa
actcttatactttttcTTGGGTCACCCGCCGGTACTGCACgcagaaaaaa
tgaaataaaatgattgtaaagtttttaacaaTCAGTTACAGCTAGAGATG
ACTCTTTGTTATCATAATGTGTAATCAATGAATCGTAAAAATATATTACA
ATGATACATTATTAATGATATATTATTTATACATCACCCCCGGTTTCACg
agaaaagtgaaaatttgagttttttccAATCTGGTCCATAAGAATGCTaa
tatttcaaaacatatttatttttaaaaacgcaaaattatattttttttgg
atttggcTAAGATTGGGCTTTTTCATGATATAAAATCTTTGTTCCTAAAC
TACGTAGATAAAAAGTtaaacattttcatcttcatttttcaaccttttcc
ttttcattttcgtgatatttttttaactctAAATGTTCCACTCGGCATta
tctttcaaacaaaaaaataattactaaATTTCTTTCCGTGCCGCTTAAAA
AGTTATATCAGACTTTAAGAATATACTGGGGGAATCCTCCTTTCTATCCC
GGGAGGGGGTACTAGTGCAAAATGCGTTACAGGGATGCACCGCtggtaag
ggtaccttttttcacctccaccagtcccacgtagggtcgcaaaaacacca
aaatagaaaaatcagtccctcgtaggcaGTGCCGTAGACACAAATTATAT
TTTAGGGGGGGCCCTATATGTTTAGTAtctaaggaggccccaccatcACG
CCTATCATAGGCTATTTAGActattttatataggctatttagccgaaaat
cgataaaaacctcgatttctgacgaaatataaatagtcgcgtcttctCTA
AGGAATACATGGTTTCTCATTGTTAGAGAAATGttcatgacaaattttga
ctCTGTGTTAATTTTGGTTTAGGAAAATATTCCACTTTGGTACTGCGCAT
GCGTGCGCATGCGCAGGGTAAGAAAATCgggctttttgaaaaaaaaattt
tttctaacAAACATGTGTTTTTGTACACGGCACTGTGTTTCATtctgttt
ccaaaattgaatgttaaaaagattcttttggctttgggcaatgaaataat
ggtgaaaaatagacgcgactatttatatttcgtcagaaatcgaggttttt
atcgattttcggccaaatagcctatataaaatagtctaaatagcctatga
tggGCTAATCAGCCtataggctaatcagcctatgataggctaatttgaag
gtgttcttgactTATATATGTTTTGAATAGAAAGAAGCGATTGCTCTCTT
TTTATGTCTTGattcattactttttttttgttcgtactcactttttcata
cttttttttgttcgtactcactttaatcgtagaacttttagcgagactaa
tgttagcgttttagcgagtttttcCTATTTTCGCTGAAacaaatctcgct
aaaacaagCCGtaccgacagatcgctaaaatctATCCAcccgaaatttct
ggttatattgtcttgtgatacatttttatcaatagttAGGGTTTCAGtac
aaagaaatgctagaaaacaaattcagtcaataatgtaatacgagtattcg
ctaaaataaatccaaaaaaaattaagattttcctgactcgctaatatacc
ataaaattagtctcgctaaaatttctacgattaaagtagctGTTATCGCA
CCTTTTATGacattaaaaaaatgttatttttgcgTTTACACTATGTGCTA
AGAAAAAGGTTCATCATGTTTTATCATACGCACTATGTTTATCACTTTTT
TATCGCATTTTTCGACAAGTGTGAACTACGCTACAGGTTCTACTTATCGA
GCAATTCGGATTTATTGAACTTATAAGTGAAACATTCGATAAGTGGAACC
ATTTTATCAATTTACCGAACAAAATATCGAACAAAACTTAGTGGGAcaaa
attttagtcacctccaAAAAAATTGGTCACTTTTGCCCGACTAAGTTTTG
TCCGATAAGGTATCAAGAGTAGACTGTATAGTCAAATGCCATACTCAAGA
ACCTCACTAATTTTACAATTCGTCAATAAAAATTCCCATCATTCCAAGAT
GCAAACCACTAGTGGGGGGATTAAGTGGAATTGTGTCACTGACCCCACCC
TAGTTtaagttttcataatttttggtcGAGCTTTATTTACTAAGCATTTG
GAAAGAGTAGCCTTGGAATTTCATCCTTTTGACACAGACTTTAGTCTTGT
ATGCTTTACTgtttttatttctcattatatTTAGTGAGGAATGACAAAGA
TAGCTATGATACGCACTACAAATGGGCATGTAACTTAATCGATTCCCAGA
ACGGAAACCCGAATATATATTCAGTCACTACCAGTCAAAATGATCATAAT
TCTGCAGCCACATTCGTCTATGGGGAACCAGACGAAATCTTGAGCATTGA
TTATGATTTGGATAATGGAAAAATTACGGATAGTAAACCAGAAGTGCTTG
AAACAATGGATAATAACAATGATTCACCCGCCGATCAAATCCTGACTTTT
ACCTACAAAGAAACCACTGGCACAAGCACCGAAAACACATCAAGTTTCAG
TAATGAAGTTGGAGCATCATTCAAAGTCGGCACGAAGTTCTCCACCGGGA
TTCCATTTATTGCCGAGGGCCAAATATCAATGGAATTGACGGCGTTATAC
AACCATACTTGGGGTAAAACAAAATCAATCTCAAATGATTTCAGTACAAG
CTCTGCTGCCACAGCTTCTGTTAAAGCAAATCCATATACTAAAATCACAT
GTGCCTTCAGTGTTCAAAAATCAGATATGGATGTCCCTTATACAATGACC
ATGAAATCTGGGAAGAAATCCTCTGGAACGTGGAAGGGCGTGAACTGCTG
GGATTTCAAGGCTACTTTTAAAGAGGAACCATTGGAAGAGACTTCTTGAA
ATCTTGTAGAGATTTTTAAACTTCACATCGCATCAACCTCCCTATTATCA
TGTTTTATCATATCATTTTGTTTTATCCATTTTCATACGTCATATTCACA
CCATCTCACCAACCTTCATATATTACATTATGTTACGTTTCATGTTTATG
TTACGTTAAGAACGCGTTACGTTACAAATACCTAAAGTATACGTCCACTC
AAATGAACTTTATTGTTTCAG Coding sequence (CDS) from alignment at sc0000099:176909..182329+ >TCONS_00009802 ID=TCONS_00009802|Name=TCONS_00009802|organism=Clytia hemisphaerica|type=CDS|length=1248bp|location=Sequence derived from alignment at sc0000099:176909..182329+ (Clytia hemisphaerica)
ATGACAATACGTTACGTTGAGGTAAGAAGCGATCATTGGTCTGATGCTCC
TTCTGCTATCATTGATAAACTCAAAAATCTTGGTGTGAAGAAGGGTCAGA
TAGTATGGATTGATGCCCATTGCGCACATATTCATGATCAAGCAATTATT
AGTGCATACTGGGATGACCACATTGCAAGCGAAGATCCACTTGACATTCG
CTTTtatttgcaaaattatgacGAAAGTTGGGCAAGCGAGTACGAAAATG
CTGTGGATTTTGCCTCGAAGATACAACCACAAAACCTTATTTCGATTACT
GGTAGTGgcaatataaaaaataaaagcgTCTGCATTGTCTTTTATTACGA
CGGTCCTGAGGCGAACCCACGACAAAATATCAGATGGAAAGAATCTAGGT
CAAGTAATTGGTCGAGTGTCGCAAATGACATCATTAAAGAATTGAAGAAT
GCTGGTGCGAAACAAGGCCAAATAATTGGAATTGACGCACATGCCAACAC
CGATAAGGCCAATCCTACAATTCAAGTAGGTTTTTGGAATGCTTCCCTTC
CTGGTAATGGTGATTTGAATATAGAAtacaaaaTGAGGAATGACAAAGAT
AGCTATGATACGCACTACAAATGGGCATGTAACTTAATCGATTCCCAGAA
CGGAAACCCGAATATATATTCAGTCACTACCAGTCAAAATGATCATAATT
CTGCAGCCACATTCGTCTATGGGGAACCAGACGAAATCTTGAGCATTGAT
TATGATTTGGATAATGGAAAAATTACGGATAGTAAACCAGAAGTGCTTGA
AACAATGGATAATAACAATGATTCACCCGCCGATCAAATCCTGACTTTTA
CCTACAAAGAAACCACTGGCACAAGCACCGAAAACACATCAAGTTTCAGT
AATGAAGTTGGAGCATCATTCAAAGTCGGCACGAAGTTCTCCACCGGGAT
TCCATTTATTGCCGAGGGCCAAATATCAATGGAATTGACGGCGTTATACA
ACCATACTTGGGGTAAAACAAAATCAATCTCAAATGATTTCAGTACAAGC
TCTGCTGCCACAGCTTCTGTTAAAGCAAATCCATATACTAAAATCACATG
TGCCTTCAGTGTTCAAAAATCAGATATGGATGTCCCTTATACAATGACCA
TGAAATCTGGGAAGAAATCCTCTGGAACGTGGAAGGGCGTGAACTGCTGG
GATTTCAAGGCTACTTTTAAAGAGGAACCATTGGAAGAGACTTCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009802-exon-sc0000099-1491911889:176909..177545 | TCONS_00009802-exon-sc0000099-1491911889:176909..177545 | Clytia hemisphaerica | exon |
| TCONS_00009802-exon-sc0000099-1510915933:176909..177545 | TCONS_00009802-exon-sc0000099-1510915933:176909..177545 | Clytia hemisphaerica | exon |
| TCONS_00009802-exon-sc0000099-1575043694:176909..177545 | TCONS_00009802-exon-sc0000099-1575043694:176909..177545 | Clytia hemisphaerica | exon |
| TCONS_00009802-exon-sc0000099-1491911889:181443..182329 | TCONS_00009802-exon-sc0000099-1491911889:181443..182329 | Clytia hemisphaerica | exon |
| TCONS_00009802-exon-sc0000099-1510915933:181443..182329 | TCONS_00009802-exon-sc0000099-1510915933:181443..182329 | Clytia hemisphaerica | exon |
| TCONS_00009802-exon-sc0000099-1575043694:181443..182329 | TCONS_00009802-exon-sc0000099-1575043694:181443..182329 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000099 | supercontig | sc0000099:176909..182329 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005830 | Aerolysn |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009405 | pathogenesis |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0009405 |
pathogenesis |
| cellular_component |
GO:0005576 |
extracellular region |
Blast
The following BLAST results are available for this feature:
|
