|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009852 ID=TCONS_00009852|Name=TCONS_00009852|organism=Clytia hemisphaerica|type=transcript|length=465bp
GCTTCCACTATCACCATCACCAAATTCTTTCATATCATATTCCAATGATA
AATTCGAAACCAAATAAAAATCCAGTAATTGAATCACCATGAAAATAACA
CTTAGTACCAGCCCAGGTGCGTTAGCGTACGAAATCGGGAATCCAAAAAG
CGAGAAATTTTCATTTGCAAAAGGAATATTCAATAATGGTCCGAAAACGA
ATCCAAGTGCAAATGAAAGCCCGATTGATGAAAATTTCCCACTTAATTCC
GATTTGGGATAAGCGCGGACAATTTCGGCCGTCATGATAGAGCGAAGACA
CCCACCACCGCCAGAGATGAGACGCCCAGTGAACAAATACCACGGAGAGT
AGGGTATAGTGTAGAGAATGTTACCTGAGATGATACACAAGTTTCCAATA
AGGATCATGAGGCGGGCGTTTCGATAATGGTCGAATAAAGCACCGAATAA
CACCGACATTGCAAC Run BLAST on NCBI transcript from alignment at sc0000099:368295..375609- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009852 ID=TCONS_00009852|Name=TCONS_00009852|organism=Clytia hemisphaerica|type=transcript|length=7315bp|location=Sequence derived from alignment at sc0000099:368295..375609- (Clytia hemisphaerica)
GCTTCCACTATCACCATCACCAAATTCTTTCATATCATATTCCAATGATA
AATTCGAAACCAAATAAAAATCCAGTAATTGAATCACCATGAAAATAACA
CTTAGTACCAGCCCAGGTGCGTTAGCGTACGAAATCGGGAATCCAAAAAG
CGAGAAATTTTCATTTGCAAAAGGAATATTCAATAATGGTCCGAAAACGA
ATCCAAGTGCAAATGAAAGCCCGATTGATGAAAATTTCCCACTTAATTCC
GATTTGGGATAAGCGCGGACAATTTCGGCCGTCATGATAGAGCGAAGACA
CCCACCACCGCCAGAGATGAGACGCCCAGTGAACAAATACCACGGAGAGT
AGGGTATAGTGTAGAGAATGTTACCTGAGATGATACACAAGTTTCCAATA
AGGATCATGAGGCGGGCGTTTCGATGATGGTCGAATAAAGCACCGAATAA
CACCGACATTGCAACCTATAAGAGAATTCAACAATTCGAATAATGATATC
GTAAAGAATCAACTTGACTCACCAAATGATAGCCTGAATTGAAAGATGCT
AGGTATGTGCGTGCTTGACCTCCAAACATTACTCTTAGGGCCGGTCTCCA
CTTGCGCGCGCTTCGATCGTACCTTTTTCGAGCAAAGCTTTCACACTATT
GTGGTAAAAAGGAAAATGAAGCAACTCCATTGGCGCGATCTAACGTAACG
GTTGAAAAAAGTTGAAGCGTGTGCGATCACAGTGCGCGCAAGTGGAGACC
GACCTTTATAGAGGCTGATTTTTGCTGAAAAAGTGGACGTCACTCTTTCT
TTCACTCGAGTTTGTGAAAAAAAACAGACCCTTAGAAGAGACCAATTTAA
ATTTATCTGATTTTTGAAACCCTTAGGCTTAGAGAGACTTTGGAAGGTGA
AAAACCCGAGCCTTAATAAGGCACACACATAGCAAAAACACCCATTTTTG
CCTAAGTATCCCCCCAGGAATGATAGGCTATATTGGAAAATATAGGAAGA
AATCTTTACCTGTGATATGAGATAGATAACCGAGATCGAACTGTAAAATA
AATTCAAATCATCTGTTTGTATTACATCTTTCAGGTACATCCAAAGTGTT
ATGAAAGTCAACGAATATTCCATTCCCAGTGCGCATGTCTCGATCAAATA
TGCGACGAATGTTTTCCGACGTTTTTGAAGCCAACTTTCATGGTTTTTGC
CATCCATTAATACCATTTCAAAAATTGATTTAAATCGTAGTAACAATGCC
AAGATTATTTATTTTTAGAGTATTATCAGCGTTCCAAGATTGTATGCCTA
GCGCAGGCTAATTTTGTCTAGACTCCTTTCTGAGACAATTCTGGAGTCTA
ATGTATATTGAGCTGATCAAAATTAGCTTTCACCGATATTCAGCATTACA
TAGTTCATGTGACAATCGGAAATTGATATTTAGAAGTTCAACTGACCAAA
ACTATTTAGCATCCCTCTCAACAAAAACGTTTGATCACTTTCTTCGAGCT
TCACTATTTTCAACTAATTCGACTCACGCACGAACTGAAGCCAAGTATCA
TTAAAAAGTGAGTTCTGCTATCTAGAGATTGCGTCAACGACATGAAACAG
TTAAAAACTGTCTTCAATTCTCTCGAGGATTTGTAAAAATATTAACAACA
TAACAGATGACACTCAATTCCATAGAGGTTGCACGAAAAGTCATTGTTAA
AAATCGAGATACAGCCAAAAGAGTAATTTCAAGTCCCTCGTGGGAGCGTA
AAAACTTCTGTTTATAAAGAAAATCGATCCCGATAGACCTCTTCACTGCT
AGTCCGGGAGCCAAATCCTATATCTCCTTAAATAAGCACTTTTCCAGTCT
TATAAAGTGTCAAAATTCATTGAAAATACCCATATTTTCCCTATTGACCC
TCAGGTAAACCGCCAAAAATAATTTTTCGCAAAAGTTTTTTGCCATTGAT
GATCACCAATCTATCTTGAAACTTTTGGCAATAATGCTTATTATTATTTT
GGTTATTTTCCAGGGGGTTAACGATTTTTGTTCAAAAGTGGATATCCAAG
GGGCTAAATATCTTTAAGGGAGCGGATATACAGGGGTTACAGTGTCTTTT
CAAGTAAAAAATACGATATCCAGGGGTAAGCATCTTTATAAGAGAGGATA
TCCAGGGGGTTGAACATATAATTAAGAGTGGATACCCAGGGTCTTTACTA
ATAAAGTAGGATATCCAGGGGTTCGATACTTCGAAAAATATCCTCAACAG
TGGGGGTAAAATTCTTTCTGGAAAAGTCCATTTGAGAAATTTATACTTTA
GTGGATAGGGCATGTATTCAATATTTCATTATTATATTTATTGGGTATCT
ATTCGAAAGGAACGTAAGTGTTGCGCGGATTTTTATAGAATTTCATAGAG
ATTTTCTGAATTTTCGCGAATTATTATATTTATTGGGTATCTATTCGAAA
GGAACGTAAGTTTTGCGCGGATTCTTATAAAATTTCATAGAGATTTTTCA
TAGTCGAATGCTCTACCACTGAGCTATATCCCCATGTCAGATTATTTTTG
ATAATTATGGTAATTTTTTTCCAAATTTACGACGAAGTACTCCTGCCATA
AGGGAACTAATTTTGGCAGTAACTAATTTTCGCGTTTTTGGTTGTCTATC
GCCAAAATTAGTTCCGCATAAAAACGCAAATTTGGTACCCTCACTTCGTA
CTTTAAGGTAGTCTCTTCACTCGACAATGCAAAGTTCAGACTCTAGTCTA
AATACCACGAAGCTCTGAAATATGATGAACTAAGTCAAAAAAATTTAAAA
CTTAGGGGACACCCGGGTTTGAACCGGGGACCTCTCGATCTGCAGTCGAA
TGCTCTACCACTGAGCTATATCCCCATGTCAGATGACATTAGAATCATAT
CTCTATCAGTTTCATGACGGAAATGTTCAGTCTCGCTAAGCTTATATTTA
TTACTCAAATCAAAAAATAATTGCTTACTTCCGTATTAAAAAATGCATCT
TAATAATGAAAAAAAAACCGCACATAATTTGAAAGCTTTTCTAGTTGGTT
GTAAAGCATTCTCCGTTTTTTTCATATTCAATCCAGAATAATTGACTATG
TTTAAAAATTCTAAACCTGTGCAAGAAAACAAATTGAACTGAAAAAAACG
TAGCATTCATTAAGCACTCTTTGATGCATTCATCCACTTCTTATTAAACC
TTTTTGACTTTGGTGCGCAGTTTTTTGAAATTAAAAATTCCAAAGTGCAA
TTAACAACTTGTAGCTTGAGAGTTTTATGTTATGTTCAGGTCCGGCGGAA
CAACCGTAAAAGTGGATGGGGAGGCTAAAGCCTCAAAATGAGATAAAATT
CGCTAGAAATTTTAGAAAAAATCTCATTTACTCAAAAGGTCTCCCGGTAT
CGCCGGGCCTGATGTTTATCTCCCTTCGATTTTATTGAAAATTGAATTGA
GGAATTACAATAGAACACTAAGCAATTTAGTTTGAATTTATTGCAAAATT
TAAAAATATCAATTTTTGCTCATAGACTTCTTAAAAAGGATTTTCAGACT
TTTTCGTAATAATATTTTTTGTTCACTGGAAGGTATTCTTTCCNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTATGACGTCATTTTG
CCTTATTTCCTTAATATCTCCTGATATATTCATTTTCAGATATAGGTTGT
GACCTTTTTCTTTATCAGTATTTCATGCTCTTTTTTTCTTTGAATGAAAC
AAATTTTTTTCAATTTTGACGACTTTTTATTTTAGTTGCCATAGTAACCA
ATGACGTCAGTTTCCATGGCAACGGGTGGTCACAGCCGGCCCCACCTCTC
AAATTTTGATCTTTTACATTCAAGGAACAATATTCAAGCATAAAATCCTT
TGCACAAGCTGCTCCACACGGGAAGCTTTTTCGCGACATAGTGGCCCCTA
CTAATACATTGTAATATCCCAAAGGGTTTATTCTCAGCAGGTGCCTTATC
AAGATGGGTTTCCTGTTTGTTGTGAACGATTATTCAAACACCCCCCCCTC
CGGATCTTATCAGGATCCTAATACAGTATATTAGTTTCTGAAAATATTTA
CTGCTGCTAAAGGAACAAGTGATACTTTTATGAACCTACCTGGTTATGCA
TTTAACACATATATAATTGATATCTACGTGAACATGAACGTTATTTAACA
ATCGTTCAGAACACAAATAGTGACGATCTTTTAAAATTAGTCGTTTGTTT
CTTATAAGAAAAACGTTTAGAAACGAAAATTTCATGCTCTTGAAATATTC
TTTTATATTCAAGACTTCGTGAGCATAAAAAGACATCTATCTCATCAAAA
AATTGAGTAATTTGGCTAAGAACATTGATGTATTCTTATTAATAGTGATT
CCTATAGATAAACATGCCTTTTTTGAGCTGAAAAGTTATTTTCCAAAAAT
CTGCTTGACCCATCTTTTACCTACTTTCATGCAAAAAATCAGAAAAAAAC
AACGATCCAATATTTCACAAAGTCCAAAAAACCCTTTTTTAGCCGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCATTCGAGGGTTTATAGTTATGCATCTTTGTGCAAAAAGTC
TTAAAGAATGAAAGAGCCAATCTCGAGAAAAGCTAATACCTTAGTAATTG
ATAATGTACTTATAAAAAATATCGAATTTGGCCAGTTTTTCTATAAAAAC
ACGCCAAGCAACCAAAATTTCATGTCTAAACACACATATGCTTCAAAAGT
AAGCCCACGTGAGCAAAACAAACATCTATCTCATAAAAAATTGAGTAATT
TGACTAAGAACATGTATGCTTATCAATAGTGATTCTTATAGATAAACATG
CGTTTTTTAAGCCAAATAAATTTTTTTGCAAAAATCTGCTTGAGCCATCT
TTTACCTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGGTACCCTACTTTCATGCAAAAAATCAGAAAAAATTAA
TGATCCAATTTTTCACAAAGTCCAAAAATCCCGTTTTTTAGCCGTTTTTT
GGCCCAAATATGCCCAAAAATTTTTTTTTTCGAAAATCGGGATCCGTCAC
ATTTTGGCTACTACCATTTTGCACCTTTTTACCAAAAATCAAATGATTCC
TATGATTCAATCTCGAGAAAAGCTGGTAACGAACGGACGGACGGACAGAG
GTGAATTTATATGACCTCCACCCCACCGGGGTAGGTCCAAAAACTGAAAA
GCTTTATCTTAAACTTGATTTTGGGGTATGGAGAATTATAATTTCGAACT
CCAACAGCAATTAAGCCCTATCGTTCATTAGAATTCGAGAATTTTTCAAC
CCCTTGAATGAATGAATATATGTTGAATATGCATCTAAGAGTATTTCCTA
TCTTACAAGAACCCTTTCCTCACTCAACCTTTTGTGCATTACAATTAGAA
ATATTAAGGAGATAAATAATAAAGAAATACAAATGGAACATGTTATTGTG
ATCCAACTAAAAGCACTCGCTGCTGACGTCAGAGCTAAAATCGCCCCAGT
CCTTGAACAAGCCAATCGGATGCTTTCTGTGGTAGTTTGAACACGTGATC
CAACCTTTGTTGCTAGGGTTACTATAAGAAATATTTCCTCCATCGCAATG
ATATTTGCTGCTAAAAAATCCCAAATGGCCAATAATACTATGTTTACAGT
ATGGTTGCCATGGAAATGTCGCAATACAACAAAGATGGCATAATCTAGCA
TCATTCCAACGATACAAAACATCGCAAAATAAATCAGTAAATGTTGGGGA
ATGGGTCTAAATGTAAACACGATCAATTGGACAACTGCACATGCACCAAA
TCCAAGAATGACGTAATTGATTTCAGTGACACCATATTGGAGATATTCGG
TTGCAGTCATTGGTAACCATAAATCAAACAAAACCATACAATACATGAAA
AGAAGGGATAAGAAAAGGATGAAACAGATTTGGACATTGTGTATCATTTT
GAAGAATATATACCATTGGTGTCTTGGTTGATCATCCGAATCTTCGTCGC
CAATGGTGAAAGGAAGTAGTCGGCTGGATGAATCTGAAATTATAGAAAAT
ACAATGAAAACGACACTTACGAAAGTTTTTCTATTAGGACCTGATGATTG
TCGTGCAAAGACATGAAACTCAGAGTACTTAAGAGAATGCAGTAGTTGTT
TTTTTTCTTGATAATAACTCTTAAAGTAGAAAAGCGTGGAAAGTTTAAAG
ACATAAAGGGTGTATATCAATGATTCCTACAAGGTAATAGCAAGCATACG
ATCAAAATTGAATGAATGAAACTTACCAAGATCATCTTTAATCTGACTTT
CCTCATAGCCGTCATCACCAATGATTGAATATTGACTTTTACCACCACCA
TCAACACCGCCATCTTCGCCACTGCTATCATTACTAATGATTGAATATTG
GCTTCCACTATCACCATCACCAAATTCTTTCATATCATATTCCAATGATA
AATTCGAAACCAAATAAAAATCCAGTAACTGAATCACCATGAAAATAACA
CTTAGTACCAGCCCAGGTGCGTTAGCGTACGAAATCGGGATTCCAAAAAG
TAAGAAATTTTCATTTGCGAAAGGAATATTCAGTAATGGTCCAAAAACAA
ATCCAAGTGCAAATGAAAGCCCGATTGATGAAAATTTCCCACTTAATTCC
AATTCGGGATAAGCGCGGACAATTTCGGCCGTCATGATAGAGCGAAGACA
CCCACCACCGCCAGAGATGAGACGCCCAGTGAACAAATACCACGGAGAGA
AGGGTATAGTGTAGAGAATGTTACCTGAGATGATACATAGGTTTCCAATA
AGGATCATGAGGCGGGCGTTTCGATAATGGTCGAATAAAGCACCGAATAA
CACCGACATTGCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009852-exon-sc0000099-1575043694:375199..375609 | TCONS_00009852-exon-sc0000099-1575043694:375199..375609 | Clytia hemisphaerica | exon |
| TCONS_00009852-exon-sc0000099-1575043694:368295..368348 | TCONS_00009852-exon-sc0000099-1575043694:368295..368348 | Clytia hemisphaerica | exon |
| TCONS_00009852-exon-sc0000099-1510915933:375199..375609 | TCONS_00009852-exon-sc0000099-1510915933:375199..375609 | Clytia hemisphaerica | exon |
| TCONS_00009852-exon-sc0000099-1510915933:368295..368348 | TCONS_00009852-exon-sc0000099-1510915933:368295..368348 | Clytia hemisphaerica | exon |
| TCONS_00009852-exon-sc0000099-1491911889:375199..375609 | TCONS_00009852-exon-sc0000099-1491911889:375199..375609 | Clytia hemisphaerica | exon |
| TCONS_00009852-exon-sc0000099-1491911889:368295..368348 | TCONS_00009852-exon-sc0000099-1491911889:368295..368348 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000099 | supercontig | sc0000099:368295..375609 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
|
