TCONS_00009854 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009854
Unique NameTCONS_00009854
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length903

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009854 ID=TCONS_00009854|Name=TCONS_00009854|organism=Clytia hemisphaerica|type=transcript|length=903bp
TAGCGATTATCAGCTTCGTTtggctgttcttgtggattTTCCTGGTTCAT
GACTCGCCAAGTCAACATCCTACAATTTCACAAGAGGAAAAGACAATGAT
AGAAACCAGTGTCAAGAAAGCTACTGATGCTGATAAGAATGGATTTTTAT
CAGCCCTTCCATACATTGCTGGAATGATTTTCCAATTCGTTGGAGGATTT
TTAGCGGATTTTCTGCAAAACAACAAACTCTCCAAACAAACAACTAAAAG
AATTATGACCGTCTTTGGATTTTATCCAACGGCTGTGTTATTACTATTGA
CCAGTTATACGAAATGTGACGAAGTTTATTTATCTGTTACTTATATGGTC
ATTGCTACAGGGTTGCTCTCCTTGAACAACTCTGGATACAACATCAACCA
CTTAGATTTGGCACCTCGTTACAGTGGCATTTTATACGGTATCGAAAACC
TAGCCGGAACAATCCCGGGAGGTGTGGCACCTGCCATCACAGGCTACTTA
ACAAATGATGACCCATCTCGTGAGAATTATCGTAAAGTGTTTGCGATCGC
CGCCTCGCTTGCCGCCTTTGGTGGAACGTTCTTCATTATCNGAAAACCTA
GCCGGAACAATCCCGGGAGGTGTGGCACCTGCCATCACAGGCTACTTAAC
AAATGATGACGTAAGCAAGTTACGAATCAAAATATGGTTCGCTCGAACTA
CGTATTGAGTTTTTGAAGTACNTTTCTGTTCCGGTGAAAAACAGAGTTGG
AACGATCCGGAAAACCATGGGATGAGTCCGGAAGAGAAATTAAAGGAAGC
CAATAAGAAAGAGATGCACGGAATTACAAATGAAGTTTATGCTATGGATG
CGACAAATTTGTAAATCATCAATTGTAAAGTCTTCACAAATTCAATTTAA
AGT
Run BLAST on NCBI

transcript from alignment at sc0000099:405507..409905-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009854 ID=TCONS_00009854|Name=TCONS_00009854|organism=Clytia hemisphaerica|type=transcript|length=4399bp|location=Sequence derived from alignment at sc0000099:405507..409905- (Clytia hemisphaerica)
TAGCGATTATCAGCTTCGTTTGGCTGTTCTTGTGGATTTTCCTGGTTCAT
GACTCGCCAAGTCAACATCCTACAATTTCACAAGAGGAAAAGACAATGAT
AGAAACCAGTGTCAAGAAAGCTACTGATGCTGATAAGGTAAGTGGAAACC
ACACTAAAGGAACAATTTAGAATTTAAGGGTTGGTTTCTAATTAAGAATC
ATTGATAATATAGAAACCAGCGTCAAGAGAGCAGGAGGACCCAGGGGTAC
TAGGTTTGCAAGATGACGGTTATGTTCGAGCCAAAGTTCGAAAATCGACC
CTCAGAGAGACTGAATCTCAAAAATTTTGTCCATTTTTTGAGATACTATT
TGCCTAAAATTTCATCAAACGTTTTGCAAATCTTAGTCAAAGTTTCAAGA
ATATTGTTGATTTTTAATTTTCGTGATCTTGGAACCCTTACAGGGACTCA
ATTGCTTTTTAATGGTTTTTGTACCCCTTTGAGGGACTTTTTTGAGGGTG
AGAAAATGGTACCCTTATGACTCGTACCCGGCACCATACTCCCTCCCCTC
GGTGAAAACAACAGACACGTATAAATTATTCAGCATTTGCTGATCAAATT
TGAGTTTTTCCCCTTTGACAAAGATCATAGCCCTTGATCTATCCCTCTAA
ACATGCAACACTGAAAGCAAATAAAAACAACGTACTACAGTCCACTCTCT
CTAATTCGAGCTTCAAGGGAGAAAAGGTTTTATTCGAATTAGAGAAAGAT
TCGAATGACAAAGAGTAACCACTTTCAAGGTTTTAGATTCTTCGCACTAA
GTTTTCTATAAAAGTGGTCCAGCAACCTGACTAAAGCTGAAGGAACCAAT
AATTTAGTTCGAATTATAGAAAGATTCGAATAATAGAGATTCGAATTAGA
GAGAGTCGACTGCACTGTAGCACGGTCTTTCACCGATCTTTTATTCACAA
GCTTCAATGTCAAATATTTTAAAATGTACTCTATAAAAATCAGTAAGATT
AAAATTGATCTGACTGTTAAAAAAATCAAAAAATTTTACATTCCGATGAA
AGCTTTTCACTATTTCAGAACTTGGTGTACCCATGGCGTGCTATTTTCTC
ATCGATTCATGTTTGGGCCATTATTATAACTCATATTTGCAAAAACTGGG
TTTGGTACATGGTTTTAACTGGTTTACCGTCATACTTCAAAAATGTTCTT
AATTTCGACATTAAAAAGGTGAGTGTTAAAATATGTCAACTATGAAAATT
ATTGATGAGAAACTTCTTAAAGACAACTTGTTGATTTAGTAGCTTGAATT
TGGGACTGTATTTGATCAACCGAGAGTGTGCTCGACCATAGTCCGTATAA
AAAACCCCGATCTGGAAGCCTTTTGTTTTTTTTTCATTGTTCCTACAAAT
TGAACTTGCGTTTGAGTTTGTTTTGCTCGCTTTTTGATCATGTGATTAAA
TCTCAAACCAATCTCAAGAGGAGTACTTGGTAACATGATCAAAAACTGAT
CAAATCAATTTTTATCTTTTGATATTAACAAAGGAAAAAGCTAACAAAAA
ATTGAAGCAATAAGCTTCCACACCAGAGTTTTTGTATGGATTATGGCTCT
ACAGACTGTACTGTGATTTTGAGAGTATCAACAAAATTCCCTTATTTCAT
AGAATGGATTTTTATCAGCCCTTCCATACATTGCTGGAATGATTTTCCAA
TTCGTTGGAGGATTTTTAGCGGATTTTCTGCAAAACAACAAACTCTCCAA
ACAAACAACTAAAAGAATTATGACCGTCTTTGGTGAGTAGATTTTATTAT
TGGATCGTCTAATGACCAAATGACCAATCGAAACCAAGCTGGCACACAAC
GTTGTTTCAATATTCATCCAACGTTGCATGGACATGAGATGAGCGTTGAA
ACTATGGTGTTTGACAGCTGGGAGTTAAACTTTTAATTTTAAAACTAAGG
GCACAATAGACAAGCGTATAGATATGAAAAGGCCTTCAAAGGGGTTCCCA
AGATTATTGCAATGCAACCCCCAAAGTCCGACTATTTTTTAATAGTAGTT
GGAAATTGTGTCACGGGACAAAATAATCTTCTATTGATGATTAGCTTTAT
TCTTTGAATCTTGCATTGCGCTCTTCTAGAACAAATTAGAATATGGGGGG
GGGGTGAGAAATATAACATTTTTTGGAAATTTACCCCCCGGATCTTGTGA
ATTTTGACCCCCCGGACAACGGATTTCACCCCCGGACAACCATCAGTTGA
CCCCCGAACATTCAAAATCACCCCTAATCAGAGCAAGTTTGCCCCTAAAA
CAAGGCAAATTTCACAGATTCTTCACTACCACCCAGACAAAATATCCAAT
ACTTCCTCCACCCCCAATGTACAAATATTTCCTGAAAGGTAGCCCAGCGC
AATCACCTTTTTCAAAATAAAAAACTTTCTAAGAACAAAAGGCTTCGATG
ATCAAAATATCAAGAACAGATAAAGAACATTTTAAAGCTTTGTGGACTAA
AAAAAACACAGTTTTTGCACACAGATTGCACGAAATTACTCTAATGGTGA
AAATAGGCTTTAAAAACTTTTGACGTTCTTATGAAAAAGCGCACACAGAG
ACTCTTTCAGAGAACCAATGATTTCAAACAATATTGTTTTTCCATTCTTT
AGGATTTTATCCAACGGCTGTGTTATTACTATTGACCAGTTATACGAAAT
GTGACGAAGTTTATTTATCTGTTACTTATATGGTCATTGCTACAGGTAGG
ATAACTTTTAAGGGGTACTCAAAGCAAGTGATTGACCTTTTTTAAGTACA
TAGCCCTTAAAGGGTTTGTTTTTAAATATTGATATCGTTTGCTTACTAAC
CAATTTTAATTTCAAGCTTTTTTCATATTGTATTGACACGTATGTGGAGC
AAGATTGGTCAGATAAAGAGGAAAAGAAAAATATTTTTTCGCTTATATCA
GCATAATATAACAAAAGGCAGGCACTTTCCTGATATGAAATACGTTTCTG
AAACAAGATCACTTATGTAAAAATAAAAGCTTAAGTGCACTGCATGTATT
CTATGGGTGTAAACAGCTAACTTTTGATAATCTTTGCGGACCTTCGGGGT
GAGTTTTTCAGGATTCCCAAAGTACACTGTGTAAGGGTGTGAAAAGTAAG
AAAAACTAAAATTTTTGCATTCATTTTGAAGTTAAAATGCATGAAATATA
TTAAAACCGTTTTCAAATGTTCTTACTGATATTGCCAATTTATCTTTTGA
TAGGGTTGCTCTCCTTGAACAACTCTGGATACAACATCAACCACTTAGAT
TTGGCACCTCGTTACAGTGGCATTTTATACGGTATCGAAAACCTAGCCGG
AACAATCCCGGGAGGTGTGGCACCTGCCATCACAGGCTACTTAACAAATG
ATGACGTAAGCAAGTTACGAATCAAAATATGGTTCGCTCGAACTACGTAT
TGAGTTTTTGAAGTACAAAGGTCTAAGAGAGGAAGGAATCTTCGTCCTTT
CTCAAGCAAGAAAAATGTGAAGCCTTAATGTTTGCGCCACCTTTGGAACG
GTTTTTTTTCACGCGGCAATTTTATCGAAATATGGCGATGGAAGTTACCT
TCTGCGAAAATCACACAGATTACGAGTTTTGGATAGTAAAATAAGAGGCT
CCACTTCCTATTCAAGAGTTTCCTCTCTAGCTCCTCCGGGCCTTTAAACT
CAATTGTTTGCGAACAGTACAAGCTTTAAAAAATGAGCTAATTTTGTTTC
ATATAAACCAATCTTTAAATCGTTTTTATAATACCATAGCTTCTATAGAG
CCAACAGTTAGAAAATTTCTGCATGCCTCTTTTAGAGAACCCTTTTTTAA
AACACTGAACATTTTTTGGCAATGTTAGTAAGGCACCCGAATTTACCATC
GTCCCGTTGTGACCACATTGGCTAAACATGGTACTGATTTTCAGTGGCCT
ACTGAGTTTGAAATAAGGCTGTTTTTCATTTTTTCATCGTGTTATTATCT
AATTTCAGCCATCTCGTGAGAATTATCGTAAAGTGTTTGCGATCGCCGCC
TCGCTTGCCGCCTTTGGTGGAACGTTCTTCATTATCNGAAAACCTAGCCG
GAACAATCCCGGGAGGTGTGGCACCTGCCATCACAGGCTACTTAACAAAT
GATGACGTAAGCAAGTTACGAATCAAAATATGGTTCGCTCGAACTACGTA
TTGAGTTTTTGAAGTACNTTTCTGTTCCGGTGAAAAACAGAGTTGGAACG
ATCCGGAAAACCATGGGATGAGTCCGGAAGAGAAATTAAAGGAAGCCAAT
AAGAAAGAGATGCACGGAATTACAAATGAAGTTTATGCTATGGATGCGAC
AAATTTGTAAATCATCAATTGTAAAGTCTTCACAAATTCAATTTAAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005511XLOC_005511Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009854-exon-sc0000099-1575043694:409769..409905TCONS_00009854-exon-sc0000099-1575043694:409769..409905Clytia hemisphaericaexon
TCONS_00009854-exon-sc0000099-1575043694:408124..408253TCONS_00009854-exon-sc0000099-1575043694:408124..408253Clytia hemisphaericaexon
TCONS_00009854-exon-sc0000099-1575043694:407161..407253TCONS_00009854-exon-sc0000099-1575043694:407161..407253Clytia hemisphaericaexon
TCONS_00009854-exon-sc0000099-1575043694:406501..406652TCONS_00009854-exon-sc0000099-1575043694:406501..406652Clytia hemisphaericaexon
TCONS_00009854-exon-sc0000099-1575043694:405507..405897TCONS_00009854-exon-sc0000099-1575043694:405507..405897Clytia hemisphaericaexon
TCONS_00009854-exon-sc0000099-1510915933:409769..409905TCONS_00009854-exon-sc0000099-1510915933:409769..409905Clytia hemisphaericaexon
TCONS_00009854-exon-sc0000099-1510915933:408124..408253TCONS_00009854-exon-sc0000099-1510915933:408124..408253Clytia hemisphaericaexon
TCONS_00009854-exon-sc0000099-1510915933:407161..407253TCONS_00009854-exon-sc0000099-1510915933:407161..407253Clytia hemisphaericaexon
TCONS_00009854-exon-sc0000099-1510915933:406501..406652TCONS_00009854-exon-sc0000099-1510915933:406501..406652Clytia hemisphaericaexon
TCONS_00009854-exon-sc0000099-1510915933:405507..405897TCONS_00009854-exon-sc0000099-1510915933:405507..405897Clytia hemisphaericaexon
TCONS_00009854-exon-sc0000099-1491911889:409769..409905TCONS_00009854-exon-sc0000099-1491911889:409769..409905Clytia hemisphaericaexon
TCONS_00009854-exon-sc0000099-1491911889:408124..408253TCONS_00009854-exon-sc0000099-1491911889:408124..408253Clytia hemisphaericaexon
TCONS_00009854-exon-sc0000099-1491911889:407161..407253TCONS_00009854-exon-sc0000099-1491911889:407161..407253Clytia hemisphaericaexon
TCONS_00009854-exon-sc0000099-1491911889:406501..406652TCONS_00009854-exon-sc0000099-1491911889:406501..406652Clytia hemisphaericaexon
TCONS_00009854-exon-sc0000099-1491911889:405507..405897TCONS_00009854-exon-sc0000099-1491911889:405507..405897Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:405507..409905 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0222608	0.0661045	0	0	0.173835	0	0	0	0.395549	0.57518	1.02425	1.93259	0	0	0	0.00147704	0.250988	0	0.983081	0	0	1.17067	1.09086	0.396055	0	0	0	0
Blast
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BLAST of TCONS_00009854 vs. Swiss-Prot (Human)
Match: VGLU2 (Vesicular glutamate transporter 2 OS=Homo sapiens GN=SLC17A6 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.168e-33
Identity = 84/276 (30.43%), Postives = 128/276 (46.38%), Query Frame = 3 
Query:   18 VWLFLWIFLVHDSPSQHPTISQEEKTMIETSVKKAT-----------------------------------------------------DADKNGFLSALPYIAGMIFQFVGGFLADFLQNNK-LSKQTTKRIMTVFGFYPTAVLLLLTSYTKCDEVYLSVTYMVIATGLLSLNNSGYNINHLDLAPRYSGILYGIENLAGTIPGGVAPAITGYLTNDDPSRENYRKVFAIAASLAAFGGTFFII----------XKPSRNNPGRCGTCHHRLLNK 653
            VW   W+ + ++SP++HPTI+ EE+  IE S+ ++                                                      +  K G LSA+P++   I   +GG +ADFL++ + LS  T ++IM   GF   A LLL+  Y+    V  +++++V+A G      SG+N+NHLD+APRY+ IL GI N  GT+ G V P I G +T +  SRE ++ VF IAA L  +GG  F              P   +  +CG  H   L++
Sbjct:  255 VWYMFWLLVSYESPAKHPTITDEERRYIEESIGESANLLGAMEKFKTPWRKFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGMLSAVPHLVMTIIVPIGGQIADFLRSKQILSTTTVRKIMNCGGFGMEATLLLVVGYSHTRGV--AISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTKNK-SREEWQYVFLIAA-LVHYGGVIFYAIFASGEKQPWADPEETSEEKCGFIHEDELDE 526
The following BLAST results are available for this feature:
BLAST of TCONS_00009854 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VGLU26.168e-3330.43Vesicular glutamate transporter 2 OS=Homo sapiens ... [more]
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