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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009865 ID=TCONS_00009865|Name=TCONS_00009865|organism=Clytia hemisphaerica|type=transcript|length=1540bp
ACAGTTATTGATTTGGTAGATTCATTTTAATTGATTATATACAACATTTC
TGTATTACTGGACAACCATATTGCCAGGGCTTTAACCGCATTATAACCTT
ATTTTCACCAGCTTATTACCTTGTTACGTTATTATCAACATTATATAACA
ATCATATTACAACAAAGCAAGGATGGTTAAAACCAAAGCAAGTATGGCCT
TACTACTGCAGTTATTGCCACTACTGGTATTATACATTACGTTTTCAACG
GGACAGTTATTaacacaacaatatcaatctACTTGCTCGCCAGATGACTT
TTATCTGAAAAGGTATCCTAAACTTGGCTTTCATGCATTTGAACCTGTTA
CAAAGTACGGAAACAACATCACCCGTGAACAAGATTGCTTCAAGTATTGC
CGTAAGCATAACTGTACTATCATATTTGTATGGTCACGAGCGACAGGCTT
AAAATGCATACTTTACCATACTTTAAACGTTGATATTTTCACTGCAAGCG
GGCGAATCACGGCTCACCAAAATCATATAGCTTTTTATGCCAGAACATCG
TGTTCTCCTGTCCACCCTAACAAACAATTAGTGCCGGTGATATACGAAAA
AGCGGCATCTTGTTCTGATATCATTGAAGCCGGTGGTTCATACAGATCCG
GTATTTACCAAGTCGGCAATGCATACAGGCCCATTAATGACAGATATAAA
TTCATATTGTGCGATATGGAGGAATCTGGCGGTGGTTGGACAGTCATACA
AAACAACGAACCAATGGATGGACGAAGTTTATGGACGAGCTTTCTGAGAT
ATGGTAATGGGTTCGGGAATTTGCGAAATGTGTTTTGGGCGGGCAATAAG
TACATACACGATTGGACGAAAAATAATGATACTGAACTATTAATTAAATT
AGTTGCAGATAATGGAGATACATACAAAGCATTTTTTCGTACGTTTTATA
TTGGGAATGAAACAGAGGGCTACCCATTGACCATCGGTGAATATTCAGTC
GCAGATTCAACACTGGCCGGTGATTCTGATCTTATCCAAAGTTCGTTTGC
TTTTCACAATGGTCAAAGATTTTCCACCCCCATAGAAGATGTAGAAGATG
ATGAGAGATGTGCCAGAGAATCACAAGGCGGTTGGTGGTTTGGAACCTAT
CCAAACTGTACCAGAGTATTTCTTAATGCGAAACATGAAACTGACATTTG
CTTAGATCCTTTGAACGCATACAAAGCGATTTATTGGACACATACGACAC
CAACGTGTTATACTAAATCAACCATGATGATTCGAAGGCGACTCAAAGCT
ATCGATATTTGAAAACTGTATTTTGGTAACTTaacgttttgtttttaaat
aagagtgatatcgtttgctcaCTCATCGATTTAAATTCACAAACTTTTTA
ACATTGGATCGACACGGatatggagcaagattggtcgaaaagaggaaaag
aaaaacattgttttgcttatatcaacataatataacaataggcagacacg
tctgtcctgatatgaaatatgtgtctgatatgaaacggga Run BLAST on NCBI protein sequence of TCONS_00009865-protein >TCONS_00009865-protein ID=TCONS_00009865-protein|Name=TCONS_00009865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=379bp
MVKTKASMALLLQLLPLLVLYITFSTGQLLTQQYQSTCSPDDFYLKRYPK
LGFHAFEPVTKYGNNITREQDCFKYCRKHNCTIIFVWSRATGLKCILYHT
LNVDIFTASGRITAHQNHIAFYARTSCSPVHPNKQLVPVIYEKAASCSDI
IEAGGSYRSGIYQVGNAYRPINDRYKFILCDMEESGGGWTVIQNNEPMDG
RSLWTSFLRYGNGFGNLRNVFWAGNKYIHDWTKNNDTELLIKLVADNGDT
YKAFFRTFYIGNETEGYPLTIGEYSVADSTLAGDSDLIQSSFAFHNGQRF
STPIEDVEDDERCARESQGGWWFGTYPNCTRVFLNAKHETDICLDPLNAY
KAIYWTHTTPTCYTKSTMMIRRRLKAIDI Run BLAST on NCBI transcript from alignment at sc0000099:129190..130729 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009865 ID=TCONS_00009865|Name=TCONS_00009865|organism=Clytia hemisphaerica|type=transcript|length=1540bp|location=Sequence derived from alignment at sc0000099:129190..130729 (Clytia hemisphaerica)
tcccgtttcatatcagacacatatttcatatcaggacagacgtgtctgcc
tattgttatattatgttgatataagcaaaacaatgtttttcttttcctct
tttcgaccaatcttgctccatatCCGTGTCGATCCAATGTTAAAAAGTTT
GTGAATTTAAATCGATGAGtgagcaaacgatatcactcttatttaaaaac
aaaacgttAAGTTACCAAAATACAGTTTTCAAATATCGATAGCTTTGAGT
CGCCTTCGAATCATCATGGTTGATTTAGTATAACACGTTGGTGTCGTATG
TGTCCAATAAATCGCTTTGTATGCGTTCAAAGGATCTAAGCAAATGTCAG
TTTCATGTTTCGCATTAAGAAATACTCTGGTACAGTTTGGATAGGTTCCA
AACCACCAACCGCCTTGTGATTCTCTGGCACATCTCTCATCATCTTCTAC
ATCTTCTATGGGGGTGGAAAATCTTTGACCATTGTGAAAAGCAAACGAAC
TTTGGATAAGATCAGAATCACCGGCCAGTGTTGAATCTGCGACTGAATAT
TCACCGATGGTCAATGGGTAGCCCTCTGTTTCATTCCCAATATAAAACGT
ACGAAAAAATGCTTTGTATGTATCTCCATTATCTGCAACTAATTTAATTA
ATAGTTCAGTATCATTATTTTTCGTCCAATCGTGTATGTACTTATTGCCC
GCCCAAAACACATTTCGCAAATTCCCGAACCCATTACCATATCTCAGAAA
GCTCGTCCATAAACTTCGTCCATCCATTGGTTCGTTGTTTTGTATGACTG
TCCAACCACCGCCAGATTCCTCCATATCGCACAATATGAATTTATATCTG
TCATTAATGGGCCTGTATGCATTGCCGACTTGGTAAATACCGGATCTGTA
TGAACCACCGGCTTCAATGATATCAGAACAAGATGCCGCTTTTTCGTATA
TCACCGGCACTAATTGTTTGTTAGGGTGGACAGGAGAACACGATGTTCTG
GCATAAAAAGCTATATGATTTTGGTGAGCCGTGATTCGCCCGCTTGCAGT
GAAAATATCAACGTTTAAAGTATGGTAAAGTATGCATTTTAAGCCTGTCG
CTCGTGACCATACAAATATGATAGTACAGTTATGCTTACGGCAATACTTG
AAGCAATCTTGTTCACGGGTGATGTTGTTTCCGTACTTTGTAACAGGTTC
AAATGCATGAAAGCCAAGTTTAGGATACCTTTTCAGATAAAAGTCATCTG
GCGAGCAAGTagattgatattgttgtgttAATAACTGTCCCGTTGAAAAC
GTAATGTATAATACCAGTAGTGGCAATAACTGCAGTAGTAAGGCCATACT
TGCTTTGGTTTTAACCATCCTTGCTTTGTTGTAATATGATTGTTATATAA
TGTTGATAATAACGTAACAAGGTAATAAGCTGGTGAAAATAAGGTTATAA
TGCGGTTAAAGCCCTGGCAATATGGTTGTCCAGTAATACAGAAATGTTGT
ATATAATCAATTAAAATGAATCTACCAAATCAATAACTGT Coding sequence (CDS) from alignment at sc0000099:129190..130729 >TCONS_00009865 ID=TCONS_00009865|Name=TCONS_00009865|organism=Clytia hemisphaerica|type=CDS|length=1140bp|location=Sequence derived from alignment at sc0000099:129190..130729 (Clytia hemisphaerica)
TCAAATATCGATAGCTTTGAGTCGCCTTCGAATCATCATGGTTGATTTAG
TATAACACGTTGGTGTCGTATGTGTCCAATAAATCGCTTTGTATGCGTTC
AAAGGATCTAAGCAAATGTCAGTTTCATGTTTCGCATTAAGAAATACTCT
GGTACAGTTTGGATAGGTTCCAAACCACCAACCGCCTTGTGATTCTCTGG
CACATCTCTCATCATCTTCTACATCTTCTATGGGGGTGGAAAATCTTTGA
CCATTGTGAAAAGCAAACGAACTTTGGATAAGATCAGAATCACCGGCCAG
TGTTGAATCTGCGACTGAATATTCACCGATGGTCAATGGGTAGCCCTCTG
TTTCATTCCCAATATAAAACGTACGAAAAAATGCTTTGTATGTATCTCCA
TTATCTGCAACTAATTTAATTAATAGTTCAGTATCATTATTTTTCGTCCA
ATCGTGTATGTACTTATTGCCCGCCCAAAACACATTTCGCAAATTCCCGA
ACCCATTACCATATCTCAGAAAGCTCGTCCATAAACTTCGTCCATCCATT
GGTTCGTTGTTTTGTATGACTGTCCAACCACCGCCAGATTCCTCCATATC
GCACAATATGAATTTATATCTGTCATTAATGGGCCTGTATGCATTGCCGA
CTTGGTAAATACCGGATCTGTATGAACCACCGGCTTCAATGATATCAGAA
CAAGATGCCGCTTTTTCGTATATCACCGGCACTAATTGTTTGTTAGGGTG
GACAGGAGAACACGATGTTCTGGCATAAAAAGCTATATGATTTTGGTGAG
CCGTGATTCGCCCGCTTGCAGTGAAAATATCAACGTTTAAAGTATGGTAA
AGTATGCATTTTAAGCCTGTCGCTCGTGACCATACAAATATGATAGTACA
GTTATGCTTACGGCAATACTTGAAGCAATCTTGTTCACGGGTGATGTTGT
TTCCGTACTTTGTAACAGGTTCAAATGCATGAAAGCCAAGTTTAGGATAC
CTTTTCAGATAAAAGTCATCTGGCGAGCAAGTagattgatattgttgtgt
tAATAACTGTCCCGTTGAAAACGTAATGTATAATACCAGTAGTGGCAATA
ACTGCAGTAGTAAGGCCATACTTGCTTTGGTTTTAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009865-exon-sc0000099-1491911889:129190..130729 | TCONS_00009865-exon-sc0000099-1491911889:129190..130729 | Clytia hemisphaerica | exon |
| TCONS_00009865-exon-sc0000099-1510915933:129190..130729 | TCONS_00009865-exon-sc0000099-1510915933:129190..130729 | Clytia hemisphaerica | exon |
| TCONS_00009865-exon-sc0000099-1575043694:129190..130729 | TCONS_00009865-exon-sc0000099-1575043694:129190..130729 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000099 | supercontig | sc0000099:129190..130729 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00009865 vs. Swiss-Prot (Human)
Match: TENX (Tenascin-X OS=Homo sapiens GN=TNXB PE=1 SV=4) HSP 1 Score: 94.3597 bits (233), Expect = 4.482e-20 Identity = 65/207 (31.40%), Postives = 96/207 (46.38%), Query Frame = 2
Query: 629 AGGSYRSGIYQVGNAYRPINDRYKFILCDMEESGGGWTVIQNNEPMDGRS-LWTSFLRYGNGFGNLRNVFWAGNKYIHDWTKNNDTELLIKLVADNGDTYKAFFRTFYIGNETEGYPLTIGEYSVADSTLAGDSDLIQSSFAFHNGQRFSTPIEDVEDDE-RCARESQGGWWFGTYPNCTRVFLNAKHETDICLDPLNAYKAIYWTH 1243
AG S S I+ GN RP+N + CDME GGGW V Q MDG++ W + Y +GFGN+ FW GN+ +H T+ D + + L A + + A + +F++ + E Y L + Y AGD S ++H+G FS D CA +G WW Y NC LN + + + ++ + W H
Sbjct: 4036 AGASRTSTIFLNGNRERPLN-----VFCDMETDGGGWLVFQRR--MDGQTDFWRDWEDYAHGFGNISGEFWLGNEALHSLTQAGDYSMRVDLRAGDEAVF-AQYDSFHVDSAAEYYRLHLEGY----HGTAGD------SMSYHSGSVFSARDRDPNSLLISCAVSYRGAWW---YRNCHYANLNGLYGSTV------DHQGVSWYH 4215
The following BLAST results are available for this feature:
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