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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009907 ID=TCONS_00009907|Name=TCONS_00009907|organism=Clytia hemisphaerica|type=transcript|length=580bp
AGACTGTATTCTTAGTCGTTATGTCATTCATAATGGCGGGAATTTGTTTA
GCCGGTATTTTTGGTGCTGGATTTTCATACTGGAAAGATGGCTACCGTCA
AGTTGGAATTACCAAATGGAATAAGCATTGCGGAGATGTAGATGGTTTTT
GTGTTTGTGATGGTATCGAGACAATGCCGAAAGATAtgaaatgtgatgAT
ATGGACGATATGATCAATTTGATTTTCGTGGAAATTGCATTATCAGCACT
TGGTTTCATCATTTCCATCATGGGATTGTTTGTCTCTTTCATGGGGATAT
GTTGTACTCCATGGGTGTATTTTGAGATGTATGACCCACGTTACGATTAC
GATTTTGGTAACGAGACTCCTGGTTCTACTCCAATAAAATATTCACCTCA
TACTGGTAATGGTGGTCATGACAACCATGGATTCGGTGCCGGTGCAAAGA
ACACCGCTCCTTTctattaaagaaaaaatattaacttcccagctggcaca
caacgttgttttaacgttcatctaacgttatatgggcgttgtgaacatta
gatgaacgttaaaacaacgttgtgtgccag Run BLAST on NCBI protein sequence of TCONS_00009907-protein >TCONS_00009907-protein ID=TCONS_00009907-protein|Name=TCONS_00009907-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
TVFLVVMSFIMAGICLAGIFGAGFSYWKDGYRQVGITKWNKHCGDVDGFC
VCDGIETMPKDMKCDDMDDMINLIFVEIALSALGFIISIMGLFVSFMGIC
CTPWVYFEMYDPRYDYDFGNETPGSTPIKYSPHTGNGGHDNHGFGAGAKN
TAPFY Run BLAST on NCBI transcript from alignment at sc0000100:196814..200360+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009907 ID=TCONS_00009907|Name=TCONS_00009907|organism=Clytia hemisphaerica|type=transcript|length=3547bp|location=Sequence derived from alignment at sc0000100:196814..200360+ (Clytia hemisphaerica)
AGACTGTATTCTTAGTCGTTATGTCATTCATAATGGCGGGAATTTGTTTA
GCCGGTATTTTTGGTGCTGGATTTTCATACTGGAAAGATGGCTACCGTCA
AGTTGGAATTACCAAATGGAATAAGCATTGCGGAGATGTAGATGGTTTTT
GTGTTTGTGATGGTATCGAGACAATGCCGAAAGATAGTAAGTTGCATCCC
GGGGggaggtacttaggcaaatggagggtacggatgtgtgccgcccttaa
gggttccttttttggaccttcaaagtcccgctaagggtcacAAAAATCAC
AATATTTCTAATTTCAAAACCCTAAGGGTCACAAAAGAAGGCAAAAAGTC
TTGCTAAGGGTcttaaaatctacaaaatttagtttttttcttcgatttta
gACCCTAAAATTCccgtttttcgaaaatcgggcggCTCCACcccgtcatc
tcgcaaacctagNTCGATAAACATTGAAACggcgttgtgtgccagctgag
tCACTCAACCCTTTCCAGGTGGCAATGTTGAAGGGCATTGGAAAAGTCGG
TGGGACGGCTGTTCGCACTTAACATTGCCACTTGGGGGAGGGGGaccttt
ccattgttttctcaAACATCAAAGTACATGATTGTACTTGTACAGCCCTT
GGAACAATTGACTTAAGTTTAAATACGATGTGCCCAATACCAAGATTGAC
AGAGCTGCGTGATACTttaaaccgtcccagtccttttttcgcacctatag
acaatagaagaAAGTGTCGAATAGGATCGGATTGAATTTAGAAGGATAAT
TTTAAATATAATTAATTGGCACGCGTATAACTGATGAATATGATATACAA
AACCTTTTTGCTTTTTACGCATCCAGTCAATTGTGATGGATCATAAAATA
CaaaacttctttcttttcaCACATCCAGTGGAATTGCGATGGATTATAAt
tacaaaacttttttctttttatgcatccagtgaaatgtgatgATATGGAC
GATATGATCAATTTGATTTTCGTGGAAATTGCATTATCAGCACTTGGTTT
CATCATTTCCATCATGGGATTGTTTGTCTCTTTCATGGGGATATGTTGTA
CTCCATGGGTGGTAAGTAGAATCATGGTCGAAATTTATTGagaattctgt
ttattttaacgtttttcaagatttaaagtttcggcgagaaagtcgatttt
gggctatctctttaactcaatcgaatatttcaatttgagatgggttggca
gacttccaggctattttctgtgccttattggactatttttaaacttttgg
atcctcagatcctaaggtcctaagtcctaagtctagtgttaaaactctac
ccttcgaacctactttagacgacttacaaatcgattgtggtttcaaaact
tcctggggaatttcccttttttctcaaatattacgaccttgCTTGTAGAG
TCTTATTATCCATTGCAAAACTGTGTATATAGACCACTGAGCTGAgattc
ccttgagaacggacaTAGTCCGAAACATgccgggaaaaatcaaaatataa
tagccgcattctttttcaccgtccaacatatATACCACTGAGCTTTATAG
cacccccttctcgcagacccagtaggatattttcagccagtggggaagaa
agtaacaaaaaaaaactcGATGGGCATTGATATTCCTATAttctttatgg
ctggggatttcaattcttttattttaaagtcAGAAAACTCAATGATGATG
GGagaaatagcataatattttgcactGAGGATTGGCTTAttcgattattt
tcagtgaggaCAAAAGTTGGAggatatttttccaccggggacgatatttt
ggccaatttttccagtgggaagggatcccagtgagtctgtgagaaggggg
tggtTGTTTTATATAAACCATGTTGCCAGTTTGTCAACCCAGCTAAGCAA
ATTATCTTTGATAAGAGATTTTCTGAAAGTACATTAATGGTAgaactact
caatagcggtgtaaatttCCTTTGAATACTCGTGATGATGTAGTGCCGTT
TGATATNTATCCATTGCAAAACTGTGTATATAGACCACTGAGCTGAgatt
cccttgagaacggaccgagtccgaaacatgtcgggaaaaatcaaaatata
atagccgcattctttttcaccgtccaacatatAGACCACTGAGCtttata
acacccccttctcgcagacccagtaggatattttcagccagtggggaaga
aaataacaaaaaaaaactcgATGGGCATTGATATTCCTATAttctttatg
gctggggatttcaattcttttattttaaagtcAGAAAACTCAATGATGAT
GGGagaaatagcataatattttgcactGAGGATTGGCTTAttcgattatt
ttcagtgaggaCAAAAGTTGGAGGATATTTTTCCaccagggacgatattt
tggccaatttttccagtgggaagggatcccagtgagtctgtgagaagggg
gtggtTGTTTTATATAAACCATGTTGCCAGTGTCAATCCCAgctaagcaa
aatctttgataagAGATTTTCTGAAAGTACATTAATGGTAGAACTACTCA
ATAGAGGTGTAAATTTCCTTTGAATACTCGTGATGATGTAGAGCCGTTTG
ATATAAATTTTTAAGTATACTGAACgagttgaaaatcaaaacaaaaagtt
tcaaaccatctatttttaaagtcatttttttaCACACCGAATTATTATGC
TCTAAGATAAGAACAGTAATACCGTCttacttcaaataaacgcccggggc
gtttatttactttttttgattctagaaggggcgtttattcgaggggctgt
ttaaaaaaaggggggcgtttattagattATTTGAGTCTAACGTCGAataa
tatttagagcaaatctactttttgttttagttctatACCGGGATTTTAGT
GCATATTTCTTTGGGTCAGCGACTAAAATTGCATCAAAACTGATCTGGTT
ACAAAAAagactaaaatcttccttttcaatcCTAATCAAAACTTGTATCA
AAGTATTtaagtcacaagtttctaataaacgcccctcccctaGAGGGTGT
TCATTTGAAGGGGGCGTTCATTTGAGGGGGCGTTtgttaaataattttcc
tttgagGAAGGGTGTTCATTCGAGGGGGGGGGCGTTTTCGATGTAATATG
GTATACACTGAAGACCAAAATATACCTTTACATTGCAAGCCTGATTCAGT
GCGTATTCCTCTCATTTTTACCATTCCATTTTAGTATTTTGAGATGTATG
ACCCACGTTACGATTACGATTTTGGTAACGAGACTCCTGGTTCTACTCCA
ATAAAATATTCACCTCATACTGGTAATGGTGGTCATGACAACCATGGATT
CGGTGCCGGTGCAAAGAACACCGCTCCTTTctattaaagaaaaaatatta
acttcccagctggcacacaacgttgttttaacgttcatctaacgttatat
gggcgttgtgaacattagatgaacgttaaaacaacgttgtgtgccag Coding sequence (CDS) from alignment at sc0000100:196814..200360+ >TCONS_00009907 ID=TCONS_00009907|Name=TCONS_00009907|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at sc0000100:196814..200360+ (Clytia hemisphaerica)
ACTGTATTCTTAGTCGTTATGTCATTCATAATGGCGGGAATTTGTTTAGC
CGGTATTTTTGGTGCTGGATTTTCATACTGGAAAGATGGCTACCGTCAAG
TTGGAATTACCAAATGGAATAAGCATTGCGGAGATGTAGATGGTTTTTGT
GTTTGTGATGGTATCGAGACAATGCCGAAAGATAtgaaatgtgatgATAT
GGACGATATGATCAATTTGATTTTCGTGGAAATTGCATTATCAGCACTTG
GTTTCATCATTTCCATCATGGGATTGTTTGTCTCTTTCATGGGGATATGT
TGTACTCCATGGGTGTATTTTGAGATGTATGACCCACGTTACGATTACGA
TTTTGGTAACGAGACTCCTGGTTCTACTCCAATAAAATATTCACCTCATA
CTGGTAATGGTGGTCATGACAACCATGGATTCGGTGCCGGTGCAAAGAAC
ACCGCTCCTTTctattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009907-exon-sc0000100-1491911889:196814..196999 | TCONS_00009907-exon-sc0000100-1491911889:196814..196999 | Clytia hemisphaerica | exon |
| TCONS_00009907-exon-sc0000100-1510915933:196814..196999 | TCONS_00009907-exon-sc0000100-1510915933:196814..196999 | Clytia hemisphaerica | exon |
| TCONS_00009907-exon-sc0000100-1575043694:196814..196999 | TCONS_00009907-exon-sc0000100-1575043694:196814..196999 | Clytia hemisphaerica | exon |
| TCONS_00009907-exon-sc0000100-1491911889:197794..197924 | TCONS_00009907-exon-sc0000100-1491911889:197794..197924 | Clytia hemisphaerica | exon |
| TCONS_00009907-exon-sc0000100-1510915933:197794..197924 | TCONS_00009907-exon-sc0000100-1510915933:197794..197924 | Clytia hemisphaerica | exon |
| TCONS_00009907-exon-sc0000100-1575043694:197794..197924 | TCONS_00009907-exon-sc0000100-1575043694:197794..197924 | Clytia hemisphaerica | exon |
| TCONS_00009907-exon-sc0000100-1491911889:200098..200360 | TCONS_00009907-exon-sc0000100-1491911889:200098..200360 | Clytia hemisphaerica | exon |
| TCONS_00009907-exon-sc0000100-1510915933:200098..200360 | TCONS_00009907-exon-sc0000100-1510915933:200098..200360 | Clytia hemisphaerica | exon |
| TCONS_00009907-exon-sc0000100-1575043694:200098..200360 | TCONS_00009907-exon-sc0000100-1575043694:200098..200360 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000100 | supercontig | sc0000100:196814..200360 + |
Blast
The following BLAST results are available for this feature:
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