TCONS_00010031 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010031
Unique NameTCONS_00010031
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010031 ID=TCONS_00010031|Name=TCONS_00010031|organism=Clytia hemisphaerica|type=transcript|length=1357bp
caaaatcaaaacaaacatggaGTTCCTCAGGTTTGGAGGTGGTTAGAcct
tttttgaggttttttagatttttttttacatgTTGAAAGATTTATTGTTT
TGTGTGGTTTGTTATAGCAATGTACATTTATAATTCTTTGCCAATTATTT
TCACTTTACCAATCGCATTCTATTTTCATACGCATCCACCACCATCGAAA
TTTCACCAAGCTCAAAATGTTGaCACCCATCTCAATGGTCAACATCGATT
CAAGCTGCAAAATGATTTACTTTCACAacttttggaaaaaacttttgGAA
GGGAAGGTCGTCTCAACTTGTTCCTCTTTGataaaatgacacaaaaattT
CATTCCCTAAATAAAGGCAAAATGTTGGACCTTTGGTGGATTGTCACAGC
CTTCACCTCTCATACTCTATTTGCGCTCGCTTCTCTATTCATCTATGAAC
ATACTGTACTGGGTGTTTGCTGCAAAATCGTCGTCCGCAAGATGTCTCGA
AGTTCGAAACTGTTGTTGATGGTGACTCGAAAAGCATTGAATcgagaaaa
tattttgcaacGAGCAGACTCAATGTCATCAACAAACGAAGATGAATTGG
ACCTTTTCGTCGAATGCgaagaaacattcgaaaatcgaTTAGTGGCTCGC
GAAGAGAGTATTCCAAAGGCCAATCACAAGGATGAGAAAATGTTAGAAAA
TAATTCCGACCCTCTATCGAGTAATGACATCAACGAATCGATGCAAGTCG
AGAAACGAAAAGATTCGGGTGTTATTGTTCCGAATGCATCGATTGGAACG
ATGGTATCGAATGTCGATTTAGTCGAGAAATCGACCGAAACAACTACCGA
GGAATTGATAAGTGCAGCAAATATGATGGTTTTGAATTCAACTCTCGCTT
ATGGAATCGAATCGAGTCCTGAGAAATTTAAACGGTTTTTACACGAACGA
AACGAAGATGTTGATCGATTAGGAATCAGTTTCGATGAAGGATACCTCGA
TGAAAGCGATACTGATTTATCGAATGAAAATGATCGATCTCGACTCATgg
atatttttgatttatcaTCATTAGGTGAAACTGTGATGGAAAAAATCTCT
TTGCTTGTATGAATCTAAATATCGTTACTCTTTTAGTCCGGCTTATAAGA
AAGTACAACCAACTGTAATTTTAAATTAAGATAGTCTTACCAATAAATAC
CTTGAGATAGAAGTGTTTTAATGGtgcaatttttatttcaaaagacACTG
ACTGAGGCGAAATTTTACATTAGTGTAACATTAGAATCAAAGAAAACACC
AATTGGAATTTTATAATCGAAGATTTcctcaacaaaaacaaaaatttgct
aGGGCAG
Run BLAST on NCBI

protein sequence of TCONS_00010031-protein

>TCONS_00010031-protein ID=TCONS_00010031-protein|Name=TCONS_00010031-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
MYIYNSLPIIFTLPIAFYFHTHPPPSKFHQAQNVDTHLNGQHRFKLQNDL
LSQLLEKTFGREGRLNLFLFDKMTQKFHSLNKGKMLDLWWIVTAFTSHTL
FALASLFIYEHTVLGVCCKIVVRKMSRSSKLLLMVTRKALNRENILQRAD
SMSSTNEDELDLFVECEETFENRLVAREESIPKANHKDEKMLENNSDPLS
SNDINESMQVEKRKDSGVIVPNASIGTMVSNVDLVEKSTETTTEELISAA
NMMVLNSTLAYGIESSPEKFKRFLHERNEDVDRLGISFDEGYLDESDTDL
SNENDRSRLMDIFDLSSLGETVMEKISLLV
Run BLAST on NCBI

transcript from alignment at sc0000101:512909..516594-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010031 ID=TCONS_00010031|Name=TCONS_00010031|organism=Clytia hemisphaerica|type=transcript|length=3686bp|location=Sequence derived from alignment at sc0000101:512909..516594- (Clytia hemisphaerica)
CAAAATCAAAACAAACATGGAGTTCCTCAGGTTTGGAGGTGGTTAGACCT
TTTTTGAGGTTTTTTAGATTTTTTTTTACATGTTGAAAGATTTATTGTTT
TGTGTGGTTTGTTATAGCAATGTACATTTATAATTCTTTGCCAATTATTT
TCACTTTACCAATCGCATTCTATTTTCATACGCATCCACCACCATCGAAA
TTTCACCAAGCTCAAAATGTTGGTAAGTTTTTTGTGTTTTTTTCTTTTCT
CGAAATACTGTAATATCTGATTCAAAACCTCCCCCGATTGTTTTGCGTGA
TGGAGTGAGGTGGTCCTTCCTTTGGCGTGATCTTAAGCGTGAGACGTGAC
TGATAAAATAAATCTTTTTTGGCTGGCCCGACTGGCGTGCAGGGACTAGG
TGGGAGACCAGGTGCTTACACAACTTGAGTAAAATAATAACCTTTGTAAA
GTCTAGTGAGTAAGTAAGTATTTCCTTCGTCTTTGAAATACCAGAAAAGT
TTCGATTTCCTTTTCACACTCCGGGGAGGGGGGGGTTTAGGGTTGTAAGC
TGACGGACGGGATGCCGCCCGACTTTCGAACTTTGGACCCTTTCCGAGAC
TAAAAAGGAGAAAACAAATAAAAAAATTGGGAATTTTACGACCCTACGCG
GGACAAATTTGACCAATTTTGTCCAAATTTTGATTTTTCAGGGAGTAAAA
GGTTGAAATCTTTCTATTTTTCTGGCCCTTAGTGGGACTTTGGAAGTCCA
AAGAAGGTACCCTTTAAGGGCGGCACATACCGTACCCTCCATTTGCCTAA
GTACCCCCCGCCCCTGGGTTCACACTACAGTAAAGTTTCGGGAAAGTGAC
TGACTACCAACAAGCCGCCCTCAAGGAACATTTTAAGAAAAAAGACTTAC
CACCAGGGTTGCTATCATCAGATACACGTTTTTTTTTAAGAATCACACTT
TTAAGAAACATGAGGCTCAGAATGCCTAAAAACTAAAAAACATCTAAGAA
ACATGCTGAGGCTGAAAATGAAAAAATGACATTTTTAATTCGTTTTTTTT
AAGAACCTTCCAATCAAAACATGAAAAATAGGCTGATTATGTCAAAAAGT
TTAGAAACATGTAAGAAACATTTAAGGCTCAAAAGGCTGATTTCTCAAGA
AACATTGAGGCTGCTTGGTAAAACTAGTTTAAAAAAAAAAAAACGTGTAC
AAATTTTCCTCTCCTCCAGATAAAGTAAAGTATTTTGTGCGACCGCAGTC
GAGAGCAACCCGAAGGCTCCCTTTTCTCTAGTTGTCCACCCAAAGGTAGG
GGCCGCTACTCCTTTCCCTGGATTTCTCCACTTACCCTTGACCCTTCTTT
TTTGCATTAAGCAGAGCGGCATCAAGTACCATTCTGGAAATCTTTGGTAT
GACCCGGCTGGGGCTGGGCGGGGGTTGAACCCACGCCACTGTAGCTGGAT
GCTCTAACTTCGTGCCACAACACAAGGTGTCACTGCCGCTGAGGAGGCCC
AACTCTTGGACAGATGGAAATGCTGCAACCCCCTAGAATTCGAGGCAATT
GGAGGTTTAAACCCCTCTGGAATTCTGAATTTTTGTTTGAATTCTTTTTT
TAGACACCCATCTCAATGGTCAACATCGATTCAAGCTGCAAAATGATTTA
CTTTCACAACTTTTGGAAAAAACTTTTGGAAGGGAAGGTCGTCTCAACTT
GTTCCTCTTTGATAAAATGACACAAAAATTTCATTCCCTAAATAAAGGTA
ATTTTAGATTCTTTTACTTTTATGATAATTTCAAAATCTTATCCTTCTTC
TATTGCAGTCAGTTAGTGTTCTTTAAGCACTTGTGGTCCCCAGGTTTAAC
TAGGTAGTCAACCGTCCCAACCTTCTTAAAAACTAAGCAAAAGGCAAAAG
CCAACACTACTATCAAAGCAACACTTGAAAATTTAGCCTTGCACATGGCT
TCAAAAAATTAAAAATTTATCTCTATATACATACTTTTCTCCTTTCCTCA
GGCAAAATGTTGGACCTTTGGTGGATTGTCACAGCCTTCACCTCTCATAC
TCTATTTGCGCTCGCTTCTCTATTCATCTATGAACATACTGTACTGGGTG
TTTGCTGCAAAATCGTCGTGTAAGAAAAAAGCATTTTGTTAAACTTCTAA
ACAGTCGGGAAGTGTACTTATAGGTGCCTATTAAACTTTTCATTTTAACA
TTAAAGAGGGGGGTTTGTAGGGTTTCGAAATACTGTTTTCCCGTCAAAAT
CTTTGCTGAATCGTGGAATCCCGGAAATTGAAAAAGAAAATAACACCTTC
ACACCGGTTTGAAAAGCTTGAAATATCGAAATACTGACAAAAAATAAGGC
TAAATACCGTCACCGTCTGATTTTAAAATACCGTATTCCGTCTATTTTTT
CGTCAAATCCCGTAATACCGTACTAAGAAAGGGCCGATCCCGTCACACCA
TAAAAGTACAATCCCCCCCTAAAGAGACTCCACGGTACCATATTTTTATG
GTACACTATCCTCAGATACAGGCTTCAACTAATCAAATTCACAAAACACT
TCTTTTCTACAGCCGCAAGATGTCTCGAAGTTCGAAACTGTTGTTGATGG
TGACTCGAAAAGCATTGAATCGAGAAAATATTTTGCAACGAGCAGACTCA
ATGTCATCAACAAACGAAGATGAATTGGACCTTTTCGTCGAATGCGAAGA
AACATTCGAAAATCGATTAGTGGCTCGCGAAGAGAGTATTCCAAAGGCCA
ATCACAAGGATGAGAAAATGTTAGAAAATAATTCCGACCCTCTATCGAGT
AATGACAGCAATNCCGCAAGATGTCTCGAAGTTCGAAACTGTTGTTGATG
GTGACTCGAAAAGCATTGAATCGAGAAAATATTTTGCAACGAGCAGACTC
TATGTCATCAACAAACGAAGATGAATTGGACCTTTTCGTCGAATGCGAAG
AAACATTCGAAAATCGATTAGTGGCTCGCGAAGAGAGTATTCCAAAGGCC
AATCACAAGGATGAGAAAATGTTAGAACATAATTCCGACCCTCTATCGAG
TAATGACATCAACGAATCGATGCAAGTCGAGAAACGAAAAGATTCGGGTG
TTATTGTTCCGAATGCATCGATTGGAACGATGGTATCGAATGTCGATTTA
GTCGAGAAATCGACCGAAACAACTACCGAGGAATTGATAAGTGCAGCAAA
TATGATGGTTTTGAATTCAACTCTCGCTTATGGAATCGAATCGAGTCCTG
AGAAATTTAAACGGTTTTTACACGAACGAAACGAAGATGTTGATCGATTA
GGAATCAGTTTCGATGAAGGATACCTCGATGAAAGCGATACTGATTTATC
GAATGAAAATGATCGATCTCGACTCATGGATATTTTTGATTTATCATCAT
TAGGTGAAACTGTGATGGAAAAAATCTCTTTGCTTGTATGAATCTAAATA
TCGTTACTCTTTTAGTCCGGCTTATAAGAAAGTACAACCAACTGTAATTT
TAAATTAAGATAGTCTTACCAATAAATACCTTGAGATAGAAGTGTTTTAA
TGGTGCAATTTTTATTTCAAAAGACACTGACTGAGGCGAAATTTTACATT
AGTGTAACATTAGAATCAAAGAAAACACCAATTGGAATTTTATAATCGAA
GATTTCCTCAACAAAAACAAAAATTTGCTAGGGCAG

Coding sequence (CDS) from alignment at sc0000101:512909..516594-

>TCONS_00010031 ID=TCONS_00010031|Name=TCONS_00010031|organism=Clytia hemisphaerica|type=CDS|length=993bp|location=Sequence derived from alignment at sc0000101:512909..516594- (Clytia hemisphaerica)
ATGTACATTTATAATTCTTTGCCAATTATTTTCACTTTACCAATCGCATT
CTATTTTCATACGCATCCACCACCATCGAAATTTCACCAAGCTCAAAATG
TTGACACCCATCTCAATGGTCAACATCGATTCAAGCTGCAAAATGATTTA
CTTTCACAACTTTTGGAAAAAACTTTTGGAAGGGAAGGTCGTCTCAACTT
GTTCCTCTTTGATAAAATGACACAAAAATTTCATTCCCTAAATAAAGGCA
AAATGTTGGACCTTTGGTGGATTGTCACAGCCTTCACCTCTCATACTCTA
TTTGCGCTCGCTTCTCTATTCATCTATGAACATACTGTACTGGGTGTTTG
CTGCAAAATCGTCGTCCGCAAGATGTCTCGAAGTTCGAAACTGTTGTTGA
TGGTGACTCGAAAAGCATTGAATCGAGAAAATATTTTGCAACGAGCAGAC
TCAATGTCATCAACAAACGAAGATGAATTGGACCTTTTCGTCGAATGCGA
AGAAACATTCGAAAATCGATTAGTGGCTCGCGAAGAGAGTATTCCAAAGG
CCAATCACAAGGATGAGAAAATGTTAGAAAATAATTCCGACCCTCTATCG
AGTAATGACATCAACGAATCGATGCAAGTCGAGAAACGAAAAGATTCGGG
TGTTATTGTTCCGAATGCATCGATTGGAACGATGGTATCGAATGTCGATT
TAGTCGAGAAATCGACCGAAACAACTACCGAGGAATTGATAAGTGCAGCA
AATATGATGGTTTTGAATTCAACTCTCGCTTATGGAATCGAATCGAGTCC
TGAGAAATTTAAACGGTTTTTACACGAACGAAACGAAGATGTTGATCGAT
TAGGAATCAGTTTCGATGAAGGATACCTCGATGAAAGCGATACTGATTTA
TCGAATGAAAATGATCGATCTCGACTCATGGATATTTTTGATTTATCATC
ATTAGGTGAAACTGTGATGGAAAAAATCTCTTTGCTTGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005622XLOC_005622Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010031-proteinTCONS_00010031-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010031-exon-sc0000101-1575043694:516373..516594TCONS_00010031-exon-sc0000101-1575043694:516373..516594Clytia hemisphaericaexon
TCONS_00010031-exon-sc0000101-1575043694:514848..514991TCONS_00010031-exon-sc0000101-1575043694:514848..514991Clytia hemisphaericaexon
TCONS_00010031-exon-sc0000101-1575043694:514476..514593TCONS_00010031-exon-sc0000101-1575043694:514476..514593Clytia hemisphaericaexon
TCONS_00010031-exon-sc0000101-1575043694:513818..514032TCONS_00010031-exon-sc0000101-1575043694:513818..514032Clytia hemisphaericaexon
TCONS_00010031-exon-sc0000101-1575043694:512909..513566TCONS_00010031-exon-sc0000101-1575043694:512909..513566Clytia hemisphaericaexon
TCONS_00010031-exon-sc0000101-1510915933:516373..516594TCONS_00010031-exon-sc0000101-1510915933:516373..516594Clytia hemisphaericaexon
TCONS_00010031-exon-sc0000101-1510915933:514848..514991TCONS_00010031-exon-sc0000101-1510915933:514848..514991Clytia hemisphaericaexon
TCONS_00010031-exon-sc0000101-1510915933:514476..514593TCONS_00010031-exon-sc0000101-1510915933:514476..514593Clytia hemisphaericaexon
TCONS_00010031-exon-sc0000101-1510915933:513818..514032TCONS_00010031-exon-sc0000101-1510915933:513818..514032Clytia hemisphaericaexon
TCONS_00010031-exon-sc0000101-1510915933:512909..513566TCONS_00010031-exon-sc0000101-1510915933:512909..513566Clytia hemisphaericaexon
TCONS_00010031-exon-sc0000101-1491911889:516373..516594TCONS_00010031-exon-sc0000101-1491911889:516373..516594Clytia hemisphaericaexon
TCONS_00010031-exon-sc0000101-1491911889:514848..514991TCONS_00010031-exon-sc0000101-1491911889:514848..514991Clytia hemisphaericaexon
TCONS_00010031-exon-sc0000101-1491911889:514476..514593TCONS_00010031-exon-sc0000101-1491911889:514476..514593Clytia hemisphaericaexon
TCONS_00010031-exon-sc0000101-1491911889:513818..514032TCONS_00010031-exon-sc0000101-1491911889:513818..514032Clytia hemisphaericaexon
TCONS_00010031-exon-sc0000101-1491911889:512909..513566TCONS_00010031-exon-sc0000101-1491911889:512909..513566Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000101supercontigsc0000101:512909..516594 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0618079	0.0602725	0.034991	0	0.773663	0.518472	0	1.50114	0.589488	0.0677506	6.98084e-06	0	0.490984	0.831126	0	0	0	0	0	0	0	0.0437228	0.0708677	0.257716	38.308	51.5284	0.0847509	0	0.485219	0.878781
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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