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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010107 ID=TCONS_00010107|Name=TCONS_00010107|organism=Clytia hemisphaerica|type=transcript|length=6583bpRun BLAST on NCBI transcript from alignment at sc0000102:253248..269912- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010107 ID=TCONS_00010107|Name=TCONS_00010107|organism=Clytia hemisphaerica|type=transcript|length=16665bp|location=Sequence derived from alignment at sc0000102:253248..269912- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00010107 vs. Swiss-Prot (Human)
Match: VWDE (von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens GN=VWDE PE=2 SV=4) HSP 1 Score: 166.777 bits (421), Expect = 5.214e-41 Identity = 144/511 (28.18%), Postives = 224/511 (43.84%), Query Frame = 1
Query: 850 NNQKRKRRSN----PNILIVPS---DDEEPYTYKPPQ-----VNITSDPKFPTKSGTTEQVAYNECNIAITQSTFGKACLRMYPDMDFTTLVDECVLDIKITDDIKASTSSAQNSFTAL---CKFVVIEEFTKNSTSTPQNNNGTKANSTTDKDETGPPVFIPPPILVENLCPNDCSGQGACVNSTCICNANFTSTDCSMEKGLPPTVRGISNGGLCDIRKRDCLRARII*FNFLDTDNLKSRSTKIDLTDTGYIKTNDIDYHDAYLLSISELVVEIPENDLKISGDIDGSPGKPMGGFSIAMSNDGVKYSTNESIFIVYDSKCLQCNANNIPICVRKNDSCNINGYCFNAGQDYPNNWCKMCDPSTNSFVNKTLKENSPPTFKNKTNHIAITNQVN-HYVILAEDPERKNQITYSTVGESNGFAISSTSGLLSYKPTKIGETRVTIRATDICGAFTDKEFTFEALKCPCEGLNGGSC----RFNETDRMQLECVCPQGCTGEKCDQPLPG 2322
N Q R +R N P + PS D E TY P+ V P +PT SG TE C + S+ G+ CL + ++++ CV D+ + DD+ S A+ L C+ ++EE N T+ T+ +D IL CPN CSG G C+ C C+ +F+S DCS P + + N G CD++K +C+ R+ F + ++K TK+ + ++ I Y + + ++P D++ +D GKP G + + +SNDG K+S N I ++YD C C C K + C I+G C+ G P + C +C P + F L+ N PP + + + N Y +A DPE + I ++ G ++SS +GL +K + ++T+R D C A T T E C+ LNGGSC F+ + L CVC G G C+ + G
Sbjct: 745 NRQNRWKRQNFHEFPPLFAFPSLSQTDLEELTYFFPEDHAEDVQQEFFPSWPTPSGLTEYSTLTLCQETLANSSIGRLCL-AFLGKRLDSVIEMCVKDVLLKDDL----SWAEAGVALLENECEKRIVEEGKYN----------TEEYGTSIED-----------ILSVLKCPNLCSGNGQCMEWGCACSPSFSSYDCSDSYDKAPEITELGNAGFCDVQKYNCMMVRVFGKGFKELPSIKCEVTKLQYNSSEWMPGEPI-YTQTVFHNSRAVDCQLP-TDVQQFDTMDLVGGKPTGKWQLKVSNDGYKFS-NPKITVIYDGACQVCGLYKNDSCTIKENVCIIDGLCYVEGDKNPTSPCLICRPKISRFTWSFLENNQPPVIQALQDKLQTFYGENFEYQFVAFDPEGSD-IHFTLDSGPEGASVSS-AGLFMWKTDLLTTQQITVRLNDDCDAET--RVTIEVTVKSCDCLNGGSCVSDRNFSPGSGVYL-CVCLPGFHGSLCEVDISG 1221 HSP 2 Score: 85.8853 bits (211), Expect = 2.770e-16 Identity = 61/204 (29.90%), Postives = 94/204 (46.08%), Query Frame = 1
Query: 73 VAIHIEKAPAKKCSATGDPHITTFDGLYYHVYHAGDYAMMGTEYGRVEVHMRTFQCGT---SVTCICGIAIRYGDDVIILDTCRGGLTPKFPSK--KKLNPAMKIIQLKGYNGLYYDIVTPDGVTIEFRGHLSGGWNPSYCNVYIKTPS-DYQNRTFGLCGNTNGKKDDELMSKDEETVFKSYENVIASLEYTNEWKLGPGDSL 666
+ I ++ P C DPHI TFDG Y + G + + + EVH+R + C + V+C CG + G D++ D C G L P K + I + Y G I G I R L G W S + I+ PS DY+N T GLCG + +++ K+ + +++ N +A + NEW++ PG S+
Sbjct: 413 IQIKVKDVPTAYCYTFTDPHIITFDGRVYDNFKTGTFVLYKSMSRDFEVHVRQWDCRSLHYPVSCNCGFVAQEGGDIVTFDMCNGQLRESQPYLFIKSQDVTRNIKISESYLGRKVTIWFSSGAFI--RADL-GEWGMS---LTIRAPSVDYRN-TLGLCGTFDENPENDFHDKNGMQIDQNFNNYVA---FINEWRILPGKSM 606 The following BLAST results are available for this feature:
BLAST of TCONS_00010107 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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