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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010167 ID=TCONS_00010167|Name=TCONS_00010167|organism=Clytia hemisphaerica|type=transcript|length=2388bp
AATTAGTTAAACATTTTCGTCAATGGTATATCAATGCATGGATTATATGT
TTCATGGTTTCAATCGGTAAATACTATAATCGTTAGTGAATAAATGCTAT
AATATGCTTAatcctttaagtgccacggtccttttttctaagcacggaaa
gggttaatcATTGTGCGTAAGGGGATTGGGTAACAGTGGTAATATTTTTG
CCTTGATCACATAGAGCATCTGACGTTTTTTATTTCGACTCGAGTGACAT
TCCAGACATTCGAGAATTTCACAATCTAATATCTTAGACCATGCACCATA
GCTACCAGATTGCATACAGCAAAGTTTTTCAGctaaatgaacaaattttt
aagtCAAGGAAAAAGGTACTGTCCGGCGGGACAAATTTACTTTAATACTA
CAAGTGATGGTGGAGTCATTTTCAAACCTCTTCTTTTAGGACCTCCCCTC
CCAAATAAAGCATTACCGCCATGAGCAGGTAGTTAAGCTTGGAAATGTAC
AAAGGGGCTTGCAAGCCCTTTTACTTCCGCCCGCGAACGCCCTTTTACAT
GAATCGAGCCAACTGTTCCGTTTGAGTGGTTCGGATGGTTGTCATCAAGC
TTACTAGAGAGTTCTGAGAGTTGGGTTGTGGCTGGTAGCTAGCATATTGT
GTGCTACTGTATTATGATTTGCCAGTATGTATTTCCTATGATAGATGGGT
TTAGTTCAAAGATATATTTCGTAAGTACAATTATTCTGCACCACCCTTCC
ATGGTTTATTCCCCTTCTCCAAACCCCCCGATAAGGTAGAGGAGGGACCT
AAAGGACCTAAAGCCCCCTTCCCTACTTTATAACAAAAAGAACTTGTCGA
ACCTATAACGTGACGTGAAATGAACTTACATCTAATTACAGTCTAACATC
TAATAagataataccgagtttatatATCGGATGATATCGAGGGCGACAGT
AATAGTCAAGTAGTCgcgcaaaacaaagtcgatagttgatgtacggctct
atatcgcctttgctcacctaaacagacgacggtattttggtgtttttacc
gtcgtcgtgCAAAGTGagcggtgattttggagacatgtcaactttgcttt
ataccgtccccctcgatttatctcgaatacataaactcgctaatgaatAA
GTATGTAAGGAAAGTTAATTGGAGGTCATATTGAAGGATGTCAAAAGTTA
AAGATATCATTTGTGCTTTTAATTGCGCGTTTAGCGAATGTAAATGAAAG
ATGAGATTAATCAACAACATATAtccccttttttataagagcattcaaaa
tttttggatgttcttaaattttcgaggtttttaagcctaaacatgttctt
attttcaccaatttgtgagtatttttgtccgttttcttAAGAAATAGGGT
ATTTTCGAGTTCGTAAttacttaaaatgttcctaactttttcttaaaatt
tcggccatcgaattcttatgttcttatgtagtttgttcttataaaaaaac
gtgcaggGAATTCCAGGGAAGCGGAAAATGATTAGAGACAAAATGACGTT
GAGTCgcaagtttgtttgttttctttgtcattacaaGATTGATGACGTCG
ATTTCCAATATGTTTCGAGTGAGTTCCTTCTATTTTCTAATCTTGTTTGA
TTTGTCGGTTTAAATCGAAATTGTcattttgttgttattttttcgtCGTA
AATAAGTACAAATTTTTGAGTTGAGTGTTAGATTTCAACCGTAATTTGAT
TGGATTTGATCTCGATTGTAGTTGATCACGTAATACAAGGCTACATATGG
TAAGGTTTTGTCTGACCAGAGTTTTTTCCAGATAAATCAAAATAGTGTTA
GTATACTTAGATGAAGGAGGTCGAAAtataaaaattgatatgaaGAATAA
CCATTTGAACGTACATAAATGATTCAAAACATTCTCATCTGAAGTATGAC
AATTCAAGAATATACTTCAGTGTTTCTTCTAGCTAAATAGATTGGAATTT
AAATGACAAAAAACCGCATGATAAGTTTTATGAAGGACTATATGTTACTC
GATCTCAGGTCATCTCTCGATGAAAGCGTGTACACAACAGATTTGTAGTG
CTGTTTTAGAAGTCATAAGTACACCTccctctcacagacccggtaggatt
ttttcagccagtggaaATAAGAATAACGGACTGAAATCTCGATTGGGATT
GATGTTCCCATATTTCTTATGgctttcaattcttttgttttcaagccaga
aaattcagtgaggatggGAAAAGTAGCATCAtatttttgcagtgaggatt
ggtttatttgattaatCTCAGTGGGGcagaaaaattggaggataattttc
caccggggacaatattttggacaatttttccagtgggc Run BLAST on NCBI transcript from alignment at sc0000103:178053..180440+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010167 ID=TCONS_00010167|Name=TCONS_00010167|organism=Clytia hemisphaerica|type=transcript|length=2388bp|location=Sequence derived from alignment at sc0000103:178053..180440+ (Clytia hemisphaerica)
AATTAGTTAAACATTTTCGTCAATGGTATATCAATGCATGGATTATATGT
TTCATGGTTTCAATCGGTAAATACTATAATCGTTAGTGAATAAATGCTAT
AATATGCTTAatcctttaagtgccacggtccttttttctaagcacggaaa
gggttaatcATTGTGCGTAAGGGGATTGGGTAACAGTGGTAATATTTTTG
CCTTGATCACATAGAGCATCTGACGTTTTTTATTTCGACTCGAGTGACAT
TCCAGACATTCGAGAATTTCACAATCTAATATCTTAGACCATGCACCATA
GCTACCAGATTGCATACAGCAAAGTTTTTCAGctaaatgaacaaattttt
aagtCAAGGAAAAAGGTACTGTCCGGCGGGACAAATTTACTTTAATACTA
CAAGTGATGGTGGAGTCATTTTCAAACCTCTTCTTTTAGGACCTCCCCTC
CCAAATAAAGCATTACCGCCATGAGCAGGTAGTTAAGCTTGGAAATGTAC
AAAGGGGCTTGCAAGCCCTTTTACTTCCGCCCGCGAACGCCCTTTTACAT
GAATCGAGCCAACTGTTCCGTTTGAGTGGTTCGGATGGTTGTCATCAAGC
TTACTAGAGAGTTCTGAGAGTTGGGTTGTGGCTGGTAGCTAGCATATTGT
GTGCTACTGTATTATGATTTGCCAGTATGTATTTCCTATGATAGATGGGT
TTAGTTCAAAGATATATTTCGTAAGTACAATTATTCTGCACCACCCTTCC
ATGGTTTATTCCCCTTCTCCAAACCCCCCGATAAGGTAGAGGAGGGACCT
AAAGGACCTAAAGCCCCCTTCCCTACTTTATAACAAAAAGAACTTGTCGA
ACCTATAACGTGACGTGAAATGAACTTACATCTAATTACAGTCTAACATC
TAATAagataataccgagtttatatATCGGATGATATCGAGGGCGACAGT
AATAGTCAAGTAGTCgcgcaaaacaaagtcgatagttgatgtacggctct
atatcgcctttgctcacctaaacagacgacggtattttggtgtttttacc
gtcgtcgtgCAAAGTGagcggtgattttggagacatgtcaactttgcttt
ataccgtccccctcgatttatctcgaatacataaactcgctaatgaatAA
GTATGTAAGGAAAGTTAATTGGAGGTCATATTGAAGGATGTCAAAAGTTA
AAGATATCATTTGTGCTTTTAATTGCGCGTTTAGCGAATGTAAATGAAAG
ATGAGATTAATCAACAACATATAtccccttttttataagagcattcaaaa
tttttggatgttcttaaattttcgaggtttttaagcctaaacatgttctt
attttcaccaatttgtgagtatttttgtccgttttcttAAGAAATAGGGT
ATTTTCGAGTTCGTAAttacttaaaatgttcctaactttttcttaaaatt
tcggccatcgaattcttatgttcttatgtagtttgttcttataaaaaaac
gtgcaggGAATTCCAGGGAAGCGGAAAATGATTAGAGACAAAATGACGTT
GAGTCgcaagtttgtttgttttctttgtcattacaaGATTGATGACGTCG
ATTTCCAATATGTTTCGAGTGAGTTCCTTCTATTTTCTAATCTTGTTTGA
TTTGTCGGTTTAAATCGAAATTGTcattttgttgttattttttcgtCGTA
AATAAGTACAAATTTTTGAGTTGAGTGTTAGATTTCAACCGTAATTTGAT
TGGATTTGATCTCGATTGTAGTTGATCACGTAATACAAGGCTACATATGG
TAAGGTTTTGTCTGACCAGAGTTTTTTCCAGATAAATCAAAATAGTGTTA
GTATACTTAGATGAAGGAGGTCGAAAtataaaaattgatatgaaGAATAA
CCATTTGAACGTACATAAATGATTCAAAACATTCTCATCTGAAGTATGAC
AATTCAAGAATATACTTCAGTGTTTCTTCTAGCTAAATAGATTGGAATTT
AAATGACAAAAAACCGCATGATAAGTTTTATGAAGGACTATATGTTACTC
GATCTCAGGTCATCTCTCGATGAAAGCGTGTACACAACAGATTTGTAGTG
CTGTTTTAGAAGTCATAAGTACACCTccctctcacagacccggtaggatt
ttttcagccagtggaaATAAGAATAACGGACTGAAATCTCGATTGGGATT
GATGTTCCCATATTTCTTATGgctttcaattcttttgttttcaagccaga
aaattcagtgaggatggGAAAAGTAGCATCAtatttttgcagtgaggatt
ggtttatttgattaatCTCAGTGGGGcagaaaaattggaggataattttc
caccggggacaatattttggacaatttttccagtgggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010167-exon-sc0000103-1491911889:178053..180440 | TCONS_00010167-exon-sc0000103-1491911889:178053..180440 | Clytia hemisphaerica | exon |
| TCONS_00010167-exon-sc0000103-1510915933:178053..180440 | TCONS_00010167-exon-sc0000103-1510915933:178053..180440 | Clytia hemisphaerica | exon |
| TCONS_00010167-exon-sc0000103-1575043694:178053..180440 | TCONS_00010167-exon-sc0000103-1575043694:178053..180440 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000103 | supercontig | sc0000103:178053..180440 + |
Blast
The following BLAST results are available for this feature:
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