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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010247 ID=TCONS_00010247|Name=TCONS_00010247|organism=Clytia hemisphaerica|type=transcript|length=1762bp
actGAAGGGCGCAAAAATGTAAGAGGCACAATTATAAGGGAATGAAGGTA
gttattcttgaaaaaattcaatgtgatagaagtaaaatttcaaatgcaaa
tttttttttcatttgtagaataaaagcttgaaaaaaatgaaatttttatc
agtAGGTAAAAGATTTTTCTCAAACCACAGTGCATTCAGAAGGATGCTGA
AGATGGGTGATATTTTGGAGGAACATTATCAAAATGGTTTGACCAATTAT
TCCAATCCACAAAATAAACAATTGATAAAAAATCTGATGGTTGAAAATGA
TCATGTGTTCAGTAGTGAAGACCAAATAAAGcGTTGGATCTATAGAAGGA
AAGCAAACGAAAAAAAGAATACACTTTCGTTTCCTCATACTCTTACAGAT
GGTACTCAGCAACCGAAACCAATTGATGTCACTTCACTAAATCTACCAGT
ATGGAAACACTATCTTGAAGACTGTCCAATGCAAGATAGAGACTGGGTAC
TAGACGGCATTCAAAATGGATTCTCTTTAGATTTTGATTCTACACCGTTG
TCAAGTGCCAGCAAGAACTTACTATCAGCTCATATCCAACCTGGTATCAT
TGATGACTACCTGGAGATGGAATTGAAACAAGGAACCATGTTGGGACCAT
ATAAAGATCCCCCTTATGATCAGTGTCAAATTAACCGGTTTGGTGTGATA
CCGAAATCAGATGGTAAATTCCGAATGATCACTGATCTGTCTTTTCCCCT
TGGCGAAAGTGTTAACGATGGAATATCTAAAGAAAATTCGACTGTTTCCT
ATACTGGACTTACTGCCGCAGTTAAAAAGATTCTAGCTCTCGGTAAAGGA
TGTTTGTTGGCAAAATTCGATATTCAACGAGCATATAGGATGATTCCATT
ACAAGAGGATGAACGTAATTTAGTTGTCATCAAATGGAAAGATTATTACT
TTGTTGATCTAGCATTACCATTCGGAGCTAGGAGTGCACCAAGAATATTT
ACTAGATTCTCCGATGTTTTAGAATGGATATTCCTGCAGAAAGGACCTGT
CAAACATATGCAACACTCTTTAGATGATTTTCTTGTACTAGGACTATCAC
AGTCTAATGATTGCCAAAAAGGTTTGGAGAACTCTTTAGGACTTTGCCAA
GAACTAGGTGTTCCTATTGAGCATCGAAAAACAATATACCCAACAACCAG
ACTCGTCTTTCTTGGCATGGAGATTGATACTGAAAAGATGGAGATGCGAA
TTCCAGaagaaaaattggataaaatcCGACAACTTTTAGATCAATGGGTT
CAGAAAAAGTCTGGTACAAAACGCTCATTATTATCTCTGATTGGTTCTTT
ATACTATTGTTGTCAAGCAGTGGTCGTTGGCAAGCCTTTTATGATTCGAT
TAACAAAGAAAGCATATTCAGTTGATAAGTTACATTTTTTAGTTAAATTG
GATGAAAAAGAAATCGAGGACTTGATGTGGTGGTATTATTTATTGAATTC
ATGGAATGGTAGAAGTTTGATGAGCAATTTTGATAAACACCGAAATGTTG
TGAAACTTCATTCATAGTTGTTGAACATCAATCATTTTTCAATGCTCATT
GATTTAAAAGGATTATAATAGCCTACGTGTAGCTCGATTTTTTAACTCAT
TTTTTCcagaactttttttatttactttgatACCTTATACATAATTGATA
TTTTCTAATTATTTTCTTATTGTTATGATATtatcttttttatgaaaatt
ataaaacCAAAC Run BLAST on NCBI protein sequence of TCONS_00010247-protein >TCONS_00010247-protein ID=TCONS_00010247-protein|Name=TCONS_00010247-protein|organism=Clytia hemisphaerica|type=polypeptide|length=476bp
MKFLSVGKRFFSNHSAFRRMLKMGDILEEHYQNGLTNYSNPQNKQLIKNL
MVENDHVFSSEDQIKRWIYRRKANEKKNTLSFPHTLTDGTQQPKPIDVTS
LNLPVWKHYLEDCPMQDRDWVLDGIQNGFSLDFDSTPLSSASKNLLSAHI
QPGIIDDYLEMELKQGTMLGPYKDPPYDQCQINRFGVIPKSDGKFRMITD
LSFPLGESVNDGISKENSTVSYTGLTAAVKKILALGKGCLLAKFDIQRAY
RMIPLQEDERNLVVIKWKDYYFVDLALPFGARSAPRIFTRFSDVLEWIFL
QKGPVKHMQHSLDDFLVLGLSQSNDCQKGLENSLGLCQELGVPIEHRKTI
YPTTRLVFLGMEIDTEKMEMRIPEEKLDKIRQLLDQWVQKKSGTKRSLLS
LIGSLYYCCQAVVVGKPFMIRLTKKAYSVDKLHFLVKLDEKEIEDLMWWY
YLLNSWNGRSLMSNFDKHRNVVKLHS Run BLAST on NCBI transcript from alignment at sc0000104:41668..45101+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010247 ID=TCONS_00010247|Name=TCONS_00010247|organism=Clytia hemisphaerica|type=transcript|length=3434bp|location=Sequence derived from alignment at sc0000104:41668..45101+ (Clytia hemisphaerica)
actGAAGGGCGCAAAAATGTAAGAGGCACAATTATAAGGGAATGAAGGTA
gttattcttgaaaaaattcaatgtgatagaagtaaaatttcaaatgcaaa
tttttttttcatttgtagaataaaagcttgaaaaaaatgaaatttttatc
agtAGGTAAAAGATTTTTCTCAAACCACAGTGCATTCAGAAGGATGCTGA
AGATGGGTGATATTTTGGAGGAACATTATCAAAATGGTTTGACCAATTAT
TCCAATCCACAAAATAAACAATTGATAAAAAATCTGATGGTTGAAAATGA
TCATGTGTTCAGTAGTGAAGACCAAATAAAGGTAGACAAAATATTGCTAG
CCATAATATATACAAAGTAGGCCTTGTTGAGAAACTTCATAACTCAATTT
AATAATTTAATAGGATGGTCTAAAATTGGGCTCTTATATCGTGCATATTG
AACTTAACTTGGCAAAAGTTATGTTACTTGAAAATGTTCTTCTTATTGCA
GCAGAAAATCACGTTTTCTTTTCTGCCAGTACTAGTAGGGGGCCAACTTT
TAGGATCTGCAGCATGTTTCTTGGGACGCAACTGCGTGTGATGCTGAGCA
AAAAGATATACTACAATAACTTGGACAGATGTGTCTCACGACGAAAGATA
CTACGGATCTGAAGGGTTTTCCTCCTACTATAAACCTTCTTCCATAATCC
AATTCCAATAATCTTTatactcaaagtttttgaaaattataccTTAGTTT
CGAATATaaatgttttagttttttttgtttatttctagcGTTGGATCTAT
AGAAGGAAAGCAAACGAAAAAAAGAATACACTTTCGTTTCCTCATACTCT
TACAGATGGTATACTTTGATCTACCTTAAAGGACAAAATTTTGGCTAGAT
TTAATTtagcggatggccgaaaaaattttcggagagaatttaatttggca
gatggcttGAAAAATTAAGTTTGATGGGAATtgatgaaagatatttttta
ccaaaaaattctgttaaattagaaaaaaacctgttttaaagctTGAAATA
GCACACACTTCGAGAATAAATACAATAACTACTTgcgggaaaaataaatt
tgatggATTTTAGCCAAttctgccaaattttctttccaccaTAAATTCTT
GTCTTAAGGTATTTCATTTTGATGCAACAAACTCATATTACTATTATTGC
TATCAGTACTAGTTGAATAACCAGTTGATTTCTCATAATATTATAATTCT
AAGTTAATCTCAGAAAATGTATTTGGTTGTAGGTTTCGAAGGCCTTTTTT
TGGAACTTTTAGAATTCGTTCAACTTGACTTAAAATAGTATCAAAATTTA
CGTAATTTACACTACATGTAGTAATTCCATGGTCAGTTCTTGAATGCTAC
AACCTCCCATCAAAACTAGTTGCTGAGGTAGAGTTTTGGcagtcggaacc
actacatGAAAAGttactattgccttaacgggaaatattaaCCGAACGGG
AAGGTAAAAATAACCcgaaaaggaaactgtttccagattgaaaatttcat
tacttttctgtttcccgttttggtcaagaacttttcatcgtccccgaacg
ggaaatataattttgtaaacaaagcagattttgtttcccgatcgagaaaa
agtttccaaatagggaagtttttaattgggaatCTGGAAATTAGAATTAA
AGAAGCGATAACCTggtggatttcttaactacctggtgaatattatttat
tttccctCCTTTACAAGAAGGATAAGTTTAAAACTTTCCACAGGAATTTC
CGGAGTGCTCAGAGGCCACTTTCCCGATAGGGAAACTGGTGAACTTCCCG
ATTTGGAAAGTCTATTCATTTCGGGAAGTTttccaccttcccgttcggga
aatatttcctgttaaggcaatagttgccttttCCATGTAGTGGTCCCGAC
TGTTTGGTGCTTTGAAGAGAATTTAAAATTGCTAAGATTGTCAACTGATA
ACACAGCTAGCACAGGAAGAACTTTTTAATAATTaacataagaaaaaaaa
ttatgatagcTTTTATATTCTAGGTACTCAGCAACCGAAACCAATTGATG
TCACTTCACTAAATCTACCAGTATGGAAACACTATCTTGAAGACTGTCCA
ATGCAAGATAGAGACTGGGTACTAGACGGCATTCAAAATGGATTCTCTTT
AGATTTTGATTCTACACCGTTGTCAAGTGCCAGCAAGAACTTACTATCAG
CTCATATCCAACCTGGTATCATTGATGACTACCTGGAGATGGAATTGAAA
CAAGGAACCATGTTGGGACCATATAAAGATCCCCCTTATGATCAGTGTCA
AATTAACCGGTTTGGTGTGATACCGAAATCAGATGGTAAATTCCGAATGA
TCACTGATCTGTCTTTTCCCCTTGGCGAAAGTGTTAACGATGGAATATCT
AAAGAAAATTCGACTGTTTCCTATACTGGACTTACTGCCGCAGTTAAAAA
GATTCTAGCTCTCGGTAAAGGATGTTTGTTGGCAAAATTCGATATTCAAC
GAGCATATAGGATGATTCCATTACAAGAGGATGAACGTAATTTAGTTGTC
ATCAAATGGAAAGATTATTACTTTGTTGATCTAGCATTACCATTCGGAGC
TAGGAGTGCACCAAGAATATTTACTAGATTCTCCGATGTTTTAGAATGGA
TATTCCTGCAGAAAGGACCTGTCAAACATATGCAACACTCTTTAGATGAT
TTTCTTGTACTAGGACTATCACAGTCTAATGATTGCCAAAAAGGTTTGGA
GAACTCTTTAGGACTTTGCCAAGAACTAGGTGTTCCTATTGAGCATCGAA
AAACAATATACCCAACAACCAGACTCGTCTTTCTTGGCATGGAGATTGAT
ACTGAAAAGATGGAGATGCGAATTCCAGaagaaaaattggataaaatcCG
ACAACTTTTAGATCAATGGGTTCAGAAAAAGTCTGGTACAAAACGCTCAT
TATTATCTCTGATTGGTTCTTTATACTATTGTTGTCAAGCAGTGGTCGTT
GGCAAGCCTTTTATGATTCGATTAACAAAGAAAGCATATTCAGTTGATAA
GTTACATTTTTTAGTTAAATTGGATGAAAAAGAAATCGAGGACTTGATGT
GGTGGTATTATTTATTGAATTCATGGAATGGTAGAAGTTTGATGAGCAAT
TTTGATAAACACCGAAATGTTGTGAAACTTCATTCATAGTTGTTGAACAT
CAATCATTTTTCAATGCTCATTGATTTAAAAGGATTATAATAGCCTACGT
GTAGCTCGATTTTTTAACTCATTTTTTCcagaactttttttatttacttt
gatACCTTATACATAATTGATATTTTCTAATTATTTTCTTATTGTTATGA
TATtatcttttttatgaaaattataaaacCAAAC Coding sequence (CDS) from alignment at sc0000104:41668..45101+ >TCONS_00010247 ID=TCONS_00010247|Name=TCONS_00010247|organism=Clytia hemisphaerica|type=CDS|length=1431bp|location=Sequence derived from alignment at sc0000104:41668..45101+ (Clytia hemisphaerica)
atgaaatttttatcagtAGGTAAAAGATTTTTCTCAAACCACAGTGCATT
CAGAAGGATGCTGAAGATGGGTGATATTTTGGAGGAACATTATCAAAATG
GTTTGACCAATTATTCCAATCCACAAAATAAACAATTGATAAAAAATCTG
ATGGTTGAAAATGATCATGTGTTCAGTAGTGAAGACCAAATAAAGcGTTG
GATCTATAGAAGGAAAGCAAACGAAAAAAAGAATACACTTTCGTTTCCTC
ATACTCTTACAGATGGTACTCAGCAACCGAAACCAATTGATGTCACTTCA
CTAAATCTACCAGTATGGAAACACTATCTTGAAGACTGTCCAATGCAAGA
TAGAGACTGGGTACTAGACGGCATTCAAAATGGATTCTCTTTAGATTTTG
ATTCTACACCGTTGTCAAGTGCCAGCAAGAACTTACTATCAGCTCATATC
CAACCTGGTATCATTGATGACTACCTGGAGATGGAATTGAAACAAGGAAC
CATGTTGGGACCATATAAAGATCCCCCTTATGATCAGTGTCAAATTAACC
GGTTTGGTGTGATACCGAAATCAGATGGTAAATTCCGAATGATCACTGAT
CTGTCTTTTCCCCTTGGCGAAAGTGTTAACGATGGAATATCTAAAGAAAA
TTCGACTGTTTCCTATACTGGACTTACTGCCGCAGTTAAAAAGATTCTAG
CTCTCGGTAAAGGATGTTTGTTGGCAAAATTCGATATTCAACGAGCATAT
AGGATGATTCCATTACAAGAGGATGAACGTAATTTAGTTGTCATCAAATG
GAAAGATTATTACTTTGTTGATCTAGCATTACCATTCGGAGCTAGGAGTG
CACCAAGAATATTTACTAGATTCTCCGATGTTTTAGAATGGATATTCCTG
CAGAAAGGACCTGTCAAACATATGCAACACTCTTTAGATGATTTTCTTGT
ACTAGGACTATCACAGTCTAATGATTGCCAAAAAGGTTTGGAGAACTCTT
TAGGACTTTGCCAAGAACTAGGTGTTCCTATTGAGCATCGAAAAACAATA
TACCCAACAACCAGACTCGTCTTTCTTGGCATGGAGATTGATACTGAAAA
GATGGAGATGCGAATTCCAGaagaaaaattggataaaatcCGACAACTTT
TAGATCAATGGGTTCAGAAAAAGTCTGGTACAAAACGCTCATTATTATCT
CTGATTGGTTCTTTATACTATTGTTGTCAAGCAGTGGTCGTTGGCAAGCC
TTTTATGATTCGATTAACAAAGAAAGCATATTCAGTTGATAAGTTACATT
TTTTAGTTAAATTGGATGAAAAAGAAATCGAGGACTTGATGTGGTGGTAT
TATTTATTGAATTCATGGAATGGTAGAAGTTTGATGAGCAATTTTGATAA
ACACCGAAATGTTGTGAAACTTCATTCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010247-exon-sc0000104-1491911889:41668..41998 | TCONS_00010247-exon-sc0000104-1491911889:41668..41998 | Clytia hemisphaerica | exon |
| TCONS_00010247-exon-sc0000104-1510915933:41668..41998 | TCONS_00010247-exon-sc0000104-1510915933:41668..41998 | Clytia hemisphaerica | exon |
| TCONS_00010247-exon-sc0000104-1575043694:41668..41998 | TCONS_00010247-exon-sc0000104-1575043694:41668..41998 | Clytia hemisphaerica | exon |
| TCONS_00010247-exon-sc0000104-1491911889:42456..42525 | TCONS_00010247-exon-sc0000104-1491911889:42456..42525 | Clytia hemisphaerica | exon |
| TCONS_00010247-exon-sc0000104-1510915933:42456..42525 | TCONS_00010247-exon-sc0000104-1510915933:42456..42525 | Clytia hemisphaerica | exon |
| TCONS_00010247-exon-sc0000104-1575043694:42456..42525 | TCONS_00010247-exon-sc0000104-1575043694:42456..42525 | Clytia hemisphaerica | exon |
| TCONS_00010247-exon-sc0000104-1491911889:43741..45101 | TCONS_00010247-exon-sc0000104-1491911889:43741..45101 | Clytia hemisphaerica | exon |
| TCONS_00010247-exon-sc0000104-1510915933:43741..45101 | TCONS_00010247-exon-sc0000104-1510915933:43741..45101 | Clytia hemisphaerica | exon |
| TCONS_00010247-exon-sc0000104-1575043694:43741..45101 | TCONS_00010247-exon-sc0000104-1575043694:43741..45101 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000104 | supercontig | sc0000104:41668..45101 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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