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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010251 ID=TCONS_00010251|Name=TCONS_00010251|organism=Clytia hemisphaerica|type=transcript|length=954bp
CGTTTTTTTTCATCACTCTCttgtttttaaatcttaaagTTTTCTAGGCG
TAAGTCACAAAGTCCATAATAACAATTTCTGTATTAGGTACAGAATGGAT
GCAAACTATTCCATTCAAAAGTGgttcaaaacataaaattataatCAATG
CCAGTACAATTACTACTAAATCTTTGGATCGAAATACGGTCGAGGAAAGA
GAAGAGAGCTTTGCATCAGGTGATGGCGAAGGTGCGATGGTTGATCCGTC
GCTTGTTGATGATGAAGATGCTGAGAGTTCAGGAGTTGGAAGTGGTGATG
GTTCGTCCAATCAAAAGCCGGGAAACAAACAACCAAAAACTACTCCCCAG
ACCTTTATTGAAGATTCAACTGCCATTTCACCAACTGCAATAACAACTTC
ATCTTCATCAAGCAACAAAATCATCCCATTGGAATGGTCAAATATTATCA
TCACTAGCGTCCCAAAAACAACTAAACCACCCAAACTGAGTTTCTACAAC
GAAAAACGGATTGAACTACATTATTATGGTCCATGTATTTTCTGCAATAT
TCGAAGCAGTTTATTTTTCGGACAGTTTGAAAGAGAATTGAAACGAAAAC
AATTCCGGACAGTTCTACTAAATTACGATTTCGCTTTCTTGGTGCAAAAA
TACCCATCAGGAATTTTCGCTACAATATTATCCTTTGGTGTGGGGCATAC
TACATTTCCGATGTTTCACTACCTTGAAATAAACGCTCCATTATCTTGCA
GTTGTTTTGCAAACGCACCCAACACGAGATACATACTGGCGGGCTCCAAA
TACGCGGGAAAGTTGATTTTAAACGCGTTTTATCCATTGTACGAAGTGAA
CAATTTCAAAGACATTGAATTAATACAAGACGCTATgaagaaaacgaaag
cgatcaaattcaaataataaaCAATTTAGTTGCCGCTGAATATTTGTGTT
AAGN Run BLAST on NCBI protein sequence of TCONS_00010251-protein >TCONS_00010251-protein ID=TCONS_00010251-protein|Name=TCONS_00010251-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
MQTIPFKSGSKHKIIINASTITTKSLDRNTVEEREESFASGDGEGAMVDP
SLVDDEDAESSGVGSGDGSSNQKPGNKQPKTTPQTFIEDSTAISPTAITT
SSSSSNKIIPLEWSNIIITSVPKTTKPPKLSFYNEKRIELHYYGPCIFCN
IRSSLFFGQFERELKRKQFRTVLLNYDFAFLVQKYPSGIFATILSFGVGH
TTFPMFHYLEINAPLSCSCFANAPNTRYILAGSKYAGKLILNAFYPLYEV
NNFKDIELIQDAMKKTKAIKFK Run BLAST on NCBI transcript from alignment at sc0000104:94562..98726+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010251 ID=TCONS_00010251|Name=TCONS_00010251|organism=Clytia hemisphaerica|type=transcript|length=4165bp|location=Sequence derived from alignment at sc0000104:94562..98726+ (Clytia hemisphaerica)
CGTTTTTTTTCATCACTCTCttgtttttaaatcttaaagTTTTCTAGGCG
TAAGTCACAAAGTCCATAATAACAATTTCTGTATTAGGTACAGAATGGAT
GCAAACTATTCCATTCAAAAGTGgttcaaaacataaaattataatCAATG
CCAGTACAATTACTACTAAATCTTTGGATCGAAATACGGTCGAGGAAAGA
GAAGAGAGCTTTGCATCAGGTGATGGCGAAGGTGCGATGGTTGATCCGTC
GCTTGTTGATGATGAAGATGCTGAGAGTTCAGGTAAGGATAACCTCTATC
CAAATTCATTCGGATTTACAACTTACTAGAAGTGAAATCGAATGCACTTT
TTtgtcattgagtttcaagccctaaaccacttatttcccatccagaacgc
ccgtgcgtaatttttacacaaacgccggattgaaactaaaacaTATCGTC
AGAAtataaaaaatgtagtcctcgaAAACAAATTAACTTCTAGACACAAT
CCGGCGTCATGATTACATTGCGTTATAtgtgcgttttggatgggaaataa
gtggcaaATTTCTCTTGCTTGAGAAGGATTAAattttcgcctctagccct
tcgggcttgaaactcgatGCATTCTTGTACCTTTAGCTAAGAACTCCCCA
TTACTCAATCTCTTCATGACAAGAAGCAAATTTGTGTTATCTGTGTTCTA
GCCGCGAATACTAGCGAAACAATTACTTTGCATAGATAGACAGTTCAATG
TAGACTTAAAAGTTCACTAATAGTATCTGCGGGCGGTAATCAAACGCGTC
AAAAACTTCTTGGTATAAGAACTGTTGAAATTAAAAACTGTAAGAACTTG
ATCACCTAATCGATCATTAGAGTAGATCTACAGGCctggcggaagcgggg
agattggggagacttcagccttcccacttttgagcaattgagattttttt
cttgaattccTAATTCCTAtagaaaattttatctcatttcgAGCCTTCAG
TCTCCCCACTTTAACACTTGTTCCGCCTGGCTTGATCTAAAGTTGGGTCA
TTAATGAAGGCACATAAATCTCCTTATCAATCTGTTCGTTATTTAAAAGG
AGTTGGAAGTGGTGATGGTTCGTCCAATCAAAAGCCGGGAAACAAACAAC
CAAAAACTACTCCCCAGACCTTTATTGAAGATTCAACTGCCATTTCACCA
ACTGCAATAACAACTTCATCTTCATCAAGCAACAAAATCATCCCATTGGA
ATGGTCAAATATTATCATCACTAGCGTCCCAAAAACAACTAAACCACCCA
AACTGAGTTTCTACAACGAAAAACGGATTGAACTACGTAAGGAAGTTTGA
TGTTTTCCCAGCTGACGCATAGCGTCGTTTTTACGTTTATTTAATATTCA
CAACGTACTCTTGTTTCCCGAATAgacccccccgctaattgttaatcaaa
aaaaatccatcccccgcCCTTATTAATTAAAGTAATTAAAGTCGAGTAAT
TCAATATTTTCCTCTccgttagtattggttcttattttacgtgtttattt
gttaaagttgcttttttgttgttgaaattgatatcagttaaaaaattatG
TCTTCAAATTATCCCCCTCTCTTATTCCATCACCCCCGCTTatttgaatt
tagaaaattttcctacccccctgctTTATTTGGACCCCCctcccgtctat
tcgggagacaagagtacatAATGAGGCCCCTCagcagatttaagatttta
aagtgcgtgattgcgtgatcggaggaacaatcgtgataacgtgatttgga
aattttgtttgCGTTATTGCGTTattgcgtgatttgaaaggtgactggTG
AGCCTCgtcaacgttgaaacaacgttgtgtgccagatgGGAAATACTTTT
CAATTCATACTTGCTTTGGGAAAAAAGGTTACAGTTGGCTGATTATAAGC
TTTTAAAAGAAATAGTAAATTCTTCTGAGGGGTTAAGTGAAAACTTTTGT
CGATTGCCACTGCGAAATACTCTGGTTTTCTTTCCTGTGCTTTTGAGCTC
CATTTTTAGCATGTGGTCACATGTCAGATTCTTAAGAATttaaattaact
ttaaaatccttaaaaagccataaaatatcttgtcaaaaattgtgatttca
attaaattagattttttctNGCCATAAAAAATCTTATCACcgatattttt
gattttgagttgaatttaaattttctttttcaactttAGATTATTATGGT
CCATGTATTTTCTGCAATATTCGAAGCAGTTTATTTTTCGGACAGTTTGA
AAGAGAATTGAAACGAAAACAATTCCGGACAGTTCTACTAAATTACGATT
TCGGTaagcattttttttcattataatcttaaccctttgagtgccagggt
ctttttttctaagtttttttttaaaaatcgctagttcaaactttaagggc
ttatatctcctgatctagaaagaaTTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattt
ctaactcaaactgggcattacaggagggcttcgccctcctatatagccca
tgtcgtatatatacgacatcggcacttaaagggttaactaCATTAACTTT
ATCAACAACTATGGTTCCTTTTTTGATACAATATATAGTTTGATATCACA
CTCTCATTACCTTAATcagaaaataatcagaaatctaaaaatctcGGTTT
TGATTGAAGGGGCTAAATCTGTAGaattaagaaaaaatgaaagtttcaat
ttttattaAAGACTTTTCAAAGTTACTTTTTTTATCCTTTCTAGCTTTCT
TGGTGCAAAAATACCCATCAGGAATTTTCGCTACAATATTATCCTTTGGT
GTGGGGCATACTACATTTCCGATGTTTCACTACCTTGAAATAAACGCTCC
ATTATCTTGCAGTTGTTTTGCAAACGCACCCAACACGAGATACATACTGG
CGGGCTCCAAATACGCGGGAAAGTTGATTTTAAACGCGTTTTATCCATTG
TACGAAGTGAACAATTTCAAAGACATTGAATTAATACAAGACGCTATgaa
gaaaacgaaagcgatcaaattcaaataataaaCAATTTAGTTGCCGCTGA
ATATTTGTGTTAAGN Coding sequence (CDS) from alignment at sc0000104:94562..98726+ >TCONS_00010251 ID=TCONS_00010251|Name=TCONS_00010251|organism=Clytia hemisphaerica|type=CDS|length=819bp|location=Sequence derived from alignment at sc0000104:94562..98726+ (Clytia hemisphaerica)
ATGCAAACTATTCCATTCAAAAGTGgttcaaaacataaaattataatCAA
TGCCAGTACAATTACTACTAAATCTTTGGATCGAAATACGGTCGAGGAAA
GAGAAGAGAGCTTTGCATCAGGTGATGGCGAAGGTGCGATGGTTGATCCG
TCGCTTGTTGATGATGAAGATGCTGAGAGTTCAGGAGTTGGAAGTGGTGA
TGGTTCGTCCAATCAAAAGCCGGGAAACAAACAACCAAAAACTACTCCCC
AGACCTTTATTGAAGATTCAACTGCCATTTCACCAACTGCAATAACAACT
TCATCTTCATCAAGCAACAAAATCATCCCATTGGAATGGTCAAATATTAT
CATCACTAGCGTCCCAAAAACAACTAAACCACCCAAACTGAGTTTCTACA
ACGAAAAACGGATTGAACTACATTATTATGGTCCATGTATTTTCTGCAAT
ATTCGAAGCAGTTTATTTTTCGGACAGTTTGAAAGAGAATTGAAACGAAA
ACAATTCCGGACAGTTCTACTAAATTACGATTTCGCTTTCTTGGTGCAAA
AATACCCATCAGGAATTTTCGCTACAATATTATCCTTTGGTGTGGGGCAT
ACTACATTTCCGATGTTTCACTACCTTGAAATAAACGCTCCATTATCTTG
CAGTTGTTTTGCAAACGCACCCAACACGAGATACATACTGGCGGGCTCCA
AATACGCGGGAAAGTTGATTTTAAACGCGTTTTATCCATTGTACGAAGTG
AACAATTTCAAAGACATTGAATTAATACAAGACGCTATgaagaaaacgaa
agcgatcaaattcaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010251-exon-sc0000104-1491911889:94562..94843 | TCONS_00010251-exon-sc0000104-1491911889:94562..94843 | Clytia hemisphaerica | exon |
| TCONS_00010251-exon-sc0000104-1510915933:94562..94843 | TCONS_00010251-exon-sc0000104-1510915933:94562..94843 | Clytia hemisphaerica | exon |
| TCONS_00010251-exon-sc0000104-1575043694:94562..94843 | TCONS_00010251-exon-sc0000104-1575043694:94562..94843 | Clytia hemisphaerica | exon |
| TCONS_00010251-exon-sc0000104-1491911889:95661..95897 | TCONS_00010251-exon-sc0000104-1491911889:95661..95897 | Clytia hemisphaerica | exon |
| TCONS_00010251-exon-sc0000104-1510915933:95661..95897 | TCONS_00010251-exon-sc0000104-1510915933:95661..95897 | Clytia hemisphaerica | exon |
| TCONS_00010251-exon-sc0000104-1575043694:95661..95897 | TCONS_00010251-exon-sc0000104-1575043694:95661..95897 | Clytia hemisphaerica | exon |
| TCONS_00010251-exon-sc0000104-1491911889:96801..96914 | TCONS_00010251-exon-sc0000104-1491911889:96801..96914 | Clytia hemisphaerica | exon |
| TCONS_00010251-exon-sc0000104-1510915933:96801..96914 | TCONS_00010251-exon-sc0000104-1510915933:96801..96914 | Clytia hemisphaerica | exon |
| TCONS_00010251-exon-sc0000104-1575043694:96801..96914 | TCONS_00010251-exon-sc0000104-1575043694:96801..96914 | Clytia hemisphaerica | exon |
| TCONS_00010251-exon-sc0000104-1491911889:98406..98726 | TCONS_00010251-exon-sc0000104-1491911889:98406..98726 | Clytia hemisphaerica | exon |
| TCONS_00010251-exon-sc0000104-1510915933:98406..98726 | TCONS_00010251-exon-sc0000104-1510915933:98406..98726 | Clytia hemisphaerica | exon |
| TCONS_00010251-exon-sc0000104-1575043694:98406..98726 | TCONS_00010251-exon-sc0000104-1575043694:98406..98726 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000104 | supercontig | sc0000104:94562..98726 + |
Blast
The following BLAST results are available for this feature:
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