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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010267 ID=TCONS_00010267|Name=TCONS_00010267|organism=Clytia hemisphaerica|type=transcript|length=5452bp
caaattttgactttgtttttagAAATCACCAATCACAGTAAATGGCAAAA
ATCCCTTTATTAAGGTATGAATGAAACACAAAACCAAgtaaaatgtcttt
aaaaataactgaaaaaaaatagctaaaatgacTGAATTATGTAAATATAT
TTAAAGTTTACCCTGTCTAGGTATAAAAGTGTGTGAATGTGAAAACAAGC
TAACGGACTTTGCCAACTATAACAGACTTacaaaaaaacctaaaaattga
attatcaGTAAACATTATCagtaaaaagattttgttgCTAGTAATTAACA
ATGAACAGTTTTATTGTCCTCCAGGTTTTTAGATGAATTAAGGCCTGAGA
GCgtatgaaacaaaataaaataataaattcacCAGCCAATACTTTTGTCA
CCATGCGATTTCTTTGTCACTTTTTGTCAACAAACTTTCTACCAGTAAGG
TATGTAAAAGTATTATTGAAGTGGGGCAAACTAAATTTGTTCATATAGCA
TTCGGTATTAATTCTGATATAAATGTTTTCATTGTGATAAAAACTGTCTC
AAAAGCTCTAGGGGCAGAATCACAATAGATGTCAGAGGATCAACATGCCA
CAAACATGAGCTGAAAAAAGTGATCAGCTGGCTCCATTTAACTTGTTCTA
TGAAATCGAAAGGTTGATGTGTTTGAGGTGGTTCATAATATTTACACAAA
CCACATTCAAActcttttgaagaaaaatctAACATCTCTTTTTCATTCAA
GATTGAAAGTTTGTAGCGAATGTAATTGGATGCATCAGTGTCACAAATCT
TGTTTTCAAGCTTTGATGTCAGCGCTTTCAGCAAGTTAAGAGATTCTTCA
TCCCCAGTGATTCGATACAAAAGATAAGCACCGAAAAATGGTGGATAAAA
TCTGACTGCACCATGTATGTGGATTTCTTCGAAAACTCCTCGCAACAGCT
CATCTGACTGCAGGAAATTTGGACATCCCAAAATAGTATCACTGACAAAA
AGAATAGGAACTGAAACAAATTTTggcttcaaatttttcactgcAATGTC
TAcaaattgttttaaaatgtGCTCACTTTTGCCTTCATTTCCTACCACGT
AGTAATACAAAGCAAGATAAATTGCACCACTAACACAATTATCGTTCAAT
GGTTCAGGAAGCTCTACCTGGGAAAGAAACAAATTTTCCATATCCACCCA
TAACTTCCTGGTATCTTCTGCACTTCTATAATAATCTGGATCAAAATATC
TTGTCAATGCCGTCAATACTAGCCATCGAATCACGGTAATTTTTGCAAAT
CGCTGCAAGATGGGATCATTGGTCAGGAATTGTAGGGCTTTCATGACATT
GTTAGTCTCTTGTGACCTATGCAAGGGGATATCATTCTTCCAATACAAGG
TCTGGTGCCTATTTAGCGCAGATCTCAAGAATTCAAGCATGTAGACATGA
GCATGTTGATAAAACTTATTACTAATGAATGTTTCTTTATCCTcattatt
gaatttttcaacaaagcCATTTTCTAAGATAGAGCACAAGACACTATTCA
AAAGCTGTGCATCTCCTATTTTGACCTGTACTTTATAGATGGAAATAAAC
ACATTCATTTCTTCAATACTGAGAAAGTTACATGCCAATATCTTTCCAAA
CAAATCCTTGCGAACATTGTCAATTTTCGAGACAAGTTTTTTGGCATCTT
CTTGTGGGTAATGGTCAATCATATGATTCTCTGGTATGAAATAATTAGGG
CAgcacttttttaaaagatataCTTTCATGGTTTCTAATATCTCATCTAC
TAGTTCAATTGTAGTGTGTTTCTCCCAAAAATCTATTGGATTCTTCTCGT
TCATCCAGAAAATAATAGTCTTAGCAAAATAGGAGCAGAGGCCCTTCTCA
TTTTTGTTATCCCCTTGCAAATGGTTTTTGAACAGTTCTTTACACAAGAA
ATAGCATTTGAATTGTATAATACCCCACTTTTGAATCAATTGTTTTTCTA
TGAGTGAGAAAGAAAACCTGAACTCTATATCAGGGTTCTCACTTTGGGCA
TGGGCTACAGGAACAACATGGCAATCACTATTAAGAATCATAGGAACCTG
TTGCTGAAAACTGGGATGAAATTCTTTGTTGTCAAATCTCTTTTGTACAA
CATTATTAGATAGCATTTGGTAGCATTGCACCATATCTGTTTCTTTATTA
TCTGGTTTTGGAGTAATCATGAAAGCTGGTCCGTGTGGGATACCAATCCC
AAAATCATGTATATGTTGTGTTTGGTTAAAGGCTTTCATGCGATCCaagt
ataattttccattcaaacttgcatagccattaaaccttttgtcagCGCAT
TTCTGATGTACTAGCAATCTTGTATAGCCAGCATGGCAAAAATCTTGATC
AAGAACCAATACTCCATCCTTATAATTCTTTGGAATATCACTAGCTGATT
CTACAATGATGAACCTTTTGTCGATATACATAATATCATAATCTCCATGA
TTGGTAATACCTTCAGCAAAGCTTCCAGAATAAATAGTGTCAATTCTATC
ACCACATTGGTATTCACAATGAAACACAGTAACTAGGTTGTCAAAGAGAT
AACAAACTTCACGAATCTTTTCAATGACAACAAAGTCCAACATataattg
acaatttcatttttaatttctttaagCTTCATTTCCTATGTTTTTAACAA
TAGTTACATAGAAAAGAAAAGTATCACataaaaaaaagatgaaaatcaat
aaaaaataaacttagtttaaaattgcaccaaaatttgataaatgcaACTG
TTTTGATAGTAATCAGTGTTAGGCAAATTTAGTTCAGAAGATAAAATAAT
TGACAATTATCTTCCATGtttaaatcttatttttattttgttttctgttt
ttgaCCTTAAAATAACTAAGTCCCTTTGACCCTACTATATTGTTGGGctt
ctgggggtaaaaagtatATACCAATTTGTCTTTTTCCATTTAAACATATT
TAAACATATTACATCTGACATGACAAACTTGAGGAGAAAGGGAAAGTCCA
ACAAGAAGACTTATCAGATCAAAGAAGCAGTTATTTTTGCTTTCTACAGT
TTGGTCCCATATTTTACCCCAANCTTTTCAGCAAGTTAATAGATTCTTCA
TCCCCAGTGATTCGATACAAAAGATAAGCACCGAAGAATGGTGGATAAAA
TCTGACTGCACCATGTATGTGGATTTCTTCGAAAACTCCTCGCAACAGCT
CATCTGACTGCAGGAAATTTGGACATTCCAAAATAGTATCACTGACAAAA
AGAATAGGAACTGAAACAAATTTTGGCTTCAAATTTCTCACTGCAATGTC
TAcaaattgttttaaaatgtGCTCACTTTTGCCTTCATTTCCTACCACGT
AGTAATACAAAGCCAGATAAATTGCACCACTAACACAATTATCGTTCAAT
GGTTCAGGAAGCTCTACCTGGGAAAGAAACAAATTTTCCATATCCACCCA
TAACTTNAAAACACAAAACCAAgtaaaatgtctttaaaaataactgaaaa
aaaaatagctaaaatgacTGAATTATGTAAATATATTTAAAGTTTACCCT
GTCTAGGTATAAAAGTGTGTGAATGTGAAAACAAGCTAACGGACTTTGCC
AACTATAACAGACTTacaaaaaaacctaaaaattgaattatcaGTAAACA
TTATCagtaaaaagattttgttgCTAGTAATTAACAATGAACAGTTTTAT
TGTCCTCCAGGTTTTTAGATGAATTAAGGCCTGAGAGCgtatgaaacaaa
ataaaataataaattcacCAGCCAATACTTTTGTCACCATGCGATTTCTT
TGTCACTTTTTGTCAACAAACTTTCTACCAGTAAGGTATGNAGGTGCCTA
TTTAGCGCAGATCTCAAGAATTCAAGCATGTAGACATGAGCATGTTGATA
AAACTTATTACTAATGCATGTTTCTTTATCCTcattattgaatttttcaa
caaagcCATTTTCTAAGATAGAGCACAAGACACTATTCAAAAGCTGTGTA
TCTCCTATTTTGACCTGTACTTTATAGATGGAAATAAACACATTCATTTC
TTCAATACTGAGAAAGTTACATGCCAATATCTTTCCAAACAAATCCTTGC
GAACATTGTCAATTTTCGAGGCAAGTTTTTTGGCATCTTCTTGTGGGTAA
TGGTCAATCATATGATTCTCTGGTATGAAATAATTAGGGCAgcacttttt
taaaagatataCTTTCATGGTTTCTAATATCTCATCTACTAGTTCAATTG
TAGTGTGTTTCTCCCAAAAACCTATTGGATTCTTCTCGTTCATCCAGAAA
ATAATAGTCTTAGCAAAATAGGAGCAGAGGCCCTTCTCATTTTCGTTATC
CCCTTGCAAATGGTTTTTGAACAGTTCTTTACACAAGAAATAGCATTTGA
ATTGTATAATACCCCACTTTTGAATCAATTGTTTTTCTATGAGTGAGAAA
GAAAACCTGAACTCTATATCAGGGTTCTCACTTTGGGCATGGGCTACAGG
AACAACATGGCAATCACTATTAAGAATCATAGGAACCTGTTGCTGAAAAC
TGGGATGAAATTCTTTGTTGTCAAATCTCTTTTGTACAACATTATTAGAT
AGCATTTGGTAGCATTGCACCATATCTGTTTCTTTATTGTCTGGTTTTGG
AGTAATCATGAAAGCCGGTCCGTGTGGGATACCAATCCCAAAATCATGTA
TATGTTGTGTTTGGTTAAAGGCTTTCATACGATCCaagtataattttcca
ttcaaacttgcatagccattaaaccttttgtcagCGCATTTCTGATGTAC
TAGCAATCTTGTATAGCCAGCATGGCAAAAATCTTGATCAAGAACCAATA
CTCCATCCTTATAATTCTTTGGAATATCACTAGCTGATTCTACAATGATG
AACCTTTTGTCGATATACATAATATCATAATCTCCATGATTGGTAATACC
TTCAGCAAAGCTTCCAGAATAAATAGTGTCAATTCTATCACCACATTGGT
ATTCACAATGAAACACAGTAACTAGGTTGTCAAAGAGATAACAAACTTCA
CGAATCTTTTCAATGACAACAAAGTCCAACATataattgacaatttcatt
tttaatttctttaagCTTCATTTCCTATGTTTTTAACAATAGTTACATAG
AAAAGAAAAGTATCACataaaaaaaagatgaaaatcaataaaaaataaac
ttagtttaaaattgcaccaaaatttgataaatgcaACTGTTTTGATAGTA
ATCAGTGTTAGGCAAATTTAGTTGAGAAGATAAAGTAATTGACAATTATC
TTCCATGtttaaatcttatttttattttgttttctgtttttgaccttaaa
aacttaaaataactAAGTTCCTTTGATCCTACTACATTGTTGGGcttctg
gg Run BLAST on NCBI transcript from alignment at sc0000104:536796..542247+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010267 ID=TCONS_00010267|Name=TCONS_00010267|organism=Clytia hemisphaerica|type=transcript|length=5452bp|location=Sequence derived from alignment at sc0000104:536796..542247+ (Clytia hemisphaerica)
caaattttgactttgtttttagAAATCACCAATCACAGTAAATGGCAAAA
ATCCCTTTATTAAGGTATGAATGAAACACAAAACCAAgtaaaatgtcttt
aaaaataactgaaaaaaaatagctaaaatgacTGAATTATGTAAATATAT
TTAAAGTTTACCCTGTCTAGGTATAAAAGTGTGTGAATGTGAAAACAAGC
TAACGGACTTTGCCAACTATAACAGACTTacaaaaaaacctaaaaattga
attatcaGTAAACATTATCagtaaaaagattttgttgCTAGTAATTAACA
ATGAACAGTTTTATTGTCCTCCAGGTTTTTAGATGAATTAAGGCCTGAGA
GCgtatgaaacaaaataaaataataaattcacCAGCCAATACTTTTGTCA
CCATGCGATTTCTTTGTCACTTTTTGTCAACAAACTTTCTACCAGTAAGG
TATGTAAAAGTATTATTGAAGTGGGGCAAACTAAATTTGTTCATATAGCA
TTCGGTATTAATTCTGATATAAATGTTTTCATTGTGATAAAAACTGTCTC
AAAAGCTCTAGGGGCAGAATCACAATAGATGTCAGAGGATCAACATGCCA
CAAACATGAGCTGAAAAAAGTGATCAGCTGGCTCCATTTAACTTGTTCTA
TGAAATCGAAAGGTTGATGTGTTTGAGGTGGTTCATAATATTTACACAAA
CCACATTCAAActcttttgaagaaaaatctAACATCTCTTTTTCATTCAA
GATTGAAAGTTTGTAGCGAATGTAATTGGATGCATCAGTGTCACAAATCT
TGTTTTCAAGCTTTGATGTCAGCGCTTTCAGCAAGTTAAGAGATTCTTCA
TCCCCAGTGATTCGATACAAAAGATAAGCACCGAAAAATGGTGGATAAAA
TCTGACTGCACCATGTATGTGGATTTCTTCGAAAACTCCTCGCAACAGCT
CATCTGACTGCAGGAAATTTGGACATCCCAAAATAGTATCACTGACAAAA
AGAATAGGAACTGAAACAAATTTTggcttcaaatttttcactgcAATGTC
TAcaaattgttttaaaatgtGCTCACTTTTGCCTTCATTTCCTACCACGT
AGTAATACAAAGCAAGATAAATTGCACCACTAACACAATTATCGTTCAAT
GGTTCAGGAAGCTCTACCTGGGAAAGAAACAAATTTTCCATATCCACCCA
TAACTTCCTGGTATCTTCTGCACTTCTATAATAATCTGGATCAAAATATC
TTGTCAATGCCGTCAATACTAGCCATCGAATCACGGTAATTTTTGCAAAT
CGCTGCAAGATGGGATCATTGGTCAGGAATTGTAGGGCTTTCATGACATT
GTTAGTCTCTTGTGACCTATGCAAGGGGATATCATTCTTCCAATACAAGG
TCTGGTGCCTATTTAGCGCAGATCTCAAGAATTCAAGCATGTAGACATGA
GCATGTTGATAAAACTTATTACTAATGAATGTTTCTTTATCCTcattatt
gaatttttcaacaaagcCATTTTCTAAGATAGAGCACAAGACACTATTCA
AAAGCTGTGCATCTCCTATTTTGACCTGTACTTTATAGATGGAAATAAAC
ACATTCATTTCTTCAATACTGAGAAAGTTACATGCCAATATCTTTCCAAA
CAAATCCTTGCGAACATTGTCAATTTTCGAGACAAGTTTTTTGGCATCTT
CTTGTGGGTAATGGTCAATCATATGATTCTCTGGTATGAAATAATTAGGG
CAgcacttttttaaaagatataCTTTCATGGTTTCTAATATCTCATCTAC
TAGTTCAATTGTAGTGTGTTTCTCCCAAAAATCTATTGGATTCTTCTCGT
TCATCCAGAAAATAATAGTCTTAGCAAAATAGGAGCAGAGGCCCTTCTCA
TTTTTGTTATCCCCTTGCAAATGGTTTTTGAACAGTTCTTTACACAAGAA
ATAGCATTTGAATTGTATAATACCCCACTTTTGAATCAATTGTTTTTCTA
TGAGTGAGAAAGAAAACCTGAACTCTATATCAGGGTTCTCACTTTGGGCA
TGGGCTACAGGAACAACATGGCAATCACTATTAAGAATCATAGGAACCTG
TTGCTGAAAACTGGGATGAAATTCTTTGTTGTCAAATCTCTTTTGTACAA
CATTATTAGATAGCATTTGGTAGCATTGCACCATATCTGTTTCTTTATTA
TCTGGTTTTGGAGTAATCATGAAAGCTGGTCCGTGTGGGATACCAATCCC
AAAATCATGTATATGTTGTGTTTGGTTAAAGGCTTTCATGCGATCCaagt
ataattttccattcaaacttgcatagccattaaaccttttgtcagCGCAT
TTCTGATGTACTAGCAATCTTGTATAGCCAGCATGGCAAAAATCTTGATC
AAGAACCAATACTCCATCCTTATAATTCTTTGGAATATCACTAGCTGATT
CTACAATGATGAACCTTTTGTCGATATACATAATATCATAATCTCCATGA
TTGGTAATACCTTCAGCAAAGCTTCCAGAATAAATAGTGTCAATTCTATC
ACCACATTGGTATTCACAATGAAACACAGTAACTAGGTTGTCAAAGAGAT
AACAAACTTCACGAATCTTTTCAATGACAACAAAGTCCAACATataattg
acaatttcatttttaatttctttaagCTTCATTTCCTATGTTTTTAACAA
TAGTTACATAGAAAAGAAAAGTATCACataaaaaaaagatgaaaatcaat
aaaaaataaacttagtttaaaattgcaccaaaatttgataaatgcaACTG
TTTTGATAGTAATCAGTGTTAGGCAAATTTAGTTCAGAAGATAAAATAAT
TGACAATTATCTTCCATGtttaaatcttatttttattttgttttctgttt
ttgaCCTTAAAATAACTAAGTCCCTTTGACCCTACTATATTGTTGGGctt
ctgggggtaaaaagtatATACCAATTTGTCTTTTTCCATTTAAACATATT
TAAACATATTACATCTGACATGACAAACTTGAGGAGAAAGGGAAAGTCCA
ACAAGAAGACTTATCAGATCAAAGAAGCAGTTATTTTTGCTTTCTACAGT
TTGGTCCCATATTTTACCCCAANCTTTTCAGCAAGTTAATAGATTCTTCA
TCCCCAGTGATTCGATACAAAAGATAAGCACCGAAGAATGGTGGATAAAA
TCTGACTGCACCATGTATGTGGATTTCTTCGAAAACTCCTCGCAACAGCT
CATCTGACTGCAGGAAATTTGGACATTCCAAAATAGTATCACTGACAAAA
AGAATAGGAACTGAAACAAATTTTGGCTTCAAATTTCTCACTGCAATGTC
TAcaaattgttttaaaatgtGCTCACTTTTGCCTTCATTTCCTACCACGT
AGTAATACAAAGCCAGATAAATTGCACCACTAACACAATTATCGTTCAAT
GGTTCAGGAAGCTCTACCTGGGAAAGAAACAAATTTTCCATATCCACCCA
TAACTTNAAAACACAAAACCAAgtaaaatgtctttaaaaataactgaaaa
aaaaatagctaaaatgacTGAATTATGTAAATATATTTAAAGTTTACCCT
GTCTAGGTATAAAAGTGTGTGAATGTGAAAACAAGCTAACGGACTTTGCC
AACTATAACAGACTTacaaaaaaacctaaaaattgaattatcaGTAAACA
TTATCagtaaaaagattttgttgCTAGTAATTAACAATGAACAGTTTTAT
TGTCCTCCAGGTTTTTAGATGAATTAAGGCCTGAGAGCgtatgaaacaaa
ataaaataataaattcacCAGCCAATACTTTTGTCACCATGCGATTTCTT
TGTCACTTTTTGTCAACAAACTTTCTACCAGTAAGGTATGNAGGTGCCTA
TTTAGCGCAGATCTCAAGAATTCAAGCATGTAGACATGAGCATGTTGATA
AAACTTATTACTAATGCATGTTTCTTTATCCTcattattgaatttttcaa
caaagcCATTTTCTAAGATAGAGCACAAGACACTATTCAAAAGCTGTGTA
TCTCCTATTTTGACCTGTACTTTATAGATGGAAATAAACACATTCATTTC
TTCAATACTGAGAAAGTTACATGCCAATATCTTTCCAAACAAATCCTTGC
GAACATTGTCAATTTTCGAGGCAAGTTTTTTGGCATCTTCTTGTGGGTAA
TGGTCAATCATATGATTCTCTGGTATGAAATAATTAGGGCAgcacttttt
taaaagatataCTTTCATGGTTTCTAATATCTCATCTACTAGTTCAATTG
TAGTGTGTTTCTCCCAAAAACCTATTGGATTCTTCTCGTTCATCCAGAAA
ATAATAGTCTTAGCAAAATAGGAGCAGAGGCCCTTCTCATTTTCGTTATC
CCCTTGCAAATGGTTTTTGAACAGTTCTTTACACAAGAAATAGCATTTGA
ATTGTATAATACCCCACTTTTGAATCAATTGTTTTTCTATGAGTGAGAAA
GAAAACCTGAACTCTATATCAGGGTTCTCACTTTGGGCATGGGCTACAGG
AACAACATGGCAATCACTATTAAGAATCATAGGAACCTGTTGCTGAAAAC
TGGGATGAAATTCTTTGTTGTCAAATCTCTTTTGTACAACATTATTAGAT
AGCATTTGGTAGCATTGCACCATATCTGTTTCTTTATTGTCTGGTTTTGG
AGTAATCATGAAAGCCGGTCCGTGTGGGATACCAATCCCAAAATCATGTA
TATGTTGTGTTTGGTTAAAGGCTTTCATACGATCCaagtataattttcca
ttcaaacttgcatagccattaaaccttttgtcagCGCATTTCTGATGTAC
TAGCAATCTTGTATAGCCAGCATGGCAAAAATCTTGATCAAGAACCAATA
CTCCATCCTTATAATTCTTTGGAATATCACTAGCTGATTCTACAATGATG
AACCTTTTGTCGATATACATAATATCATAATCTCCATGATTGGTAATACC
TTCAGCAAAGCTTCCAGAATAAATAGTGTCAATTCTATCACCACATTGGT
ATTCACAATGAAACACAGTAACTAGGTTGTCAAAGAGATAACAAACTTCA
CGAATCTTTTCAATGACAACAAAGTCCAACATataattgacaatttcatt
tttaatttctttaagCTTCATTTCCTATGTTTTTAACAATAGTTACATAG
AAAAGAAAAGTATCACataaaaaaaagatgaaaatcaataaaaaataaac
ttagtttaaaattgcaccaaaatttgataaatgcaACTGTTTTGATAGTA
ATCAGTGTTAGGCAAATTTAGTTGAGAAGATAAAGTAATTGACAATTATC
TTCCATGtttaaatcttatttttattttgttttctgtttttgaccttaaa
aacttaaaataactAAGTTCCTTTGATCCTACTACATTGTTGGGcttctg
gg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010267-exon-sc0000104-1491911889:536796..542247 | TCONS_00010267-exon-sc0000104-1491911889:536796..542247 | Clytia hemisphaerica | exon |
| TCONS_00010267-exon-sc0000104-1510915933:536796..542247 | TCONS_00010267-exon-sc0000104-1510915933:536796..542247 | Clytia hemisphaerica | exon |
| TCONS_00010267-exon-sc0000104-1575043694:536796..542247 | TCONS_00010267-exon-sc0000104-1575043694:536796..542247 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000104 | supercontig | sc0000104:536796..542247 + |
Blast
The following BLAST results are available for this feature:
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