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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010268 ID=TCONS_00010268|Name=TCONS_00010268|organism=Clytia hemisphaerica|type=transcript|length=2627bp
CTTTATTAAGGTATGAATGAAACACAAAACCAAgtaaaatgtctttaaaa
ataactgaaaaaaaatagctaaaatgacTGAATTATGTAAATATATTTAA
AGTTTACCCTGTCTAGGTATAAAAGTGTGTGAATGTGAAAACAAGCTAAC
GGACTTTGCCAACTATAACAGACTTacaaaaaaacctaaaaattgaatta
tcaGTAAACATTATCagtaaaaagattttgttgCTAGTAATTAACAATGA
ACAGTTTTATTGTCCTCCAGGTTTTTAGATGAATTAAGGCCTGAGAGCgt
atgaaacaaaataaaataataaattcacCAGCCAATACTTTTGTCACCAT
GCGATTTCTTTGTCACTTTTTGTCAACAAACTTTCTACCAGTAAGGTATG
TAAAAGTATTATTGAAGTGGGGCAAACTAAATTTGTTCATATAGCATTCG
GTATTAATTCTGATATAAATGTTTTCATTGTGATAAAAACTGTCTCAAAA
GCTCTAGGGGCAGAATCACAATAGATGTCAGAGGATCAACATGCCACAAA
CATGAGCTGAAAAAAGTGATCAGCTGGCTCCATTTAACTTGTTCTATGAA
ATCGAAAGGTTGATGTGTTTGAGGTGGTTCATAATATTTACACAAACCAC
ATTCAAActcttttgaagaaaaatctAACATCTCTTTTTCATTCAAGATT
GAAAGTTTGTAGCGAATGTAATTGGATGCATCAGTGTCACAAATCTTGTT
TTCAAGCTTTGATGTCAGCGCTTTCAGCAAGTTAAGAGATTCTTCATCCC
CAGTGATTCGATACAAAAGATAAGCACCGAAAAATGGTGGATAAAATCTG
ACTGCACCATGTATGTGGATTTCTTCGAAAACTCCTCGCAACAGCTCATC
TGACTGCAGGAAATTTGGACATCCCAAAATAGTATCACTGACAAAAAGAA
TAGGAACTGAAACAAATTTTggcttcaaatttttcactgcAATGTCTAca
aattgttttaaaatgtGCTCACTTTTGCCTTCATTTCCTACCACGTAGTA
ATACAAAGCAAGATAAATTGCACCACTAACACAATTATCGTTCAATGGTT
CAGGAAGCTCTACCTGGGAAAGAAACAAATTTTCCATATCCACCCATAAC
TTCCTGGTATCTTCTGCACTTCTATAATAATCTGGATCAAAATATCTTGT
CAATGCCGTCAATACTAGCCATCGAATCACGGTAATTTTTGCAAATCGCT
GCAAGATGGGATCATTGGTCAGGAATTGTAGGGCTTTCATGACATTGTTA
GTCTCTTGTGACCTATGCAAGGGGATATCATTCTTCCAATACAAGGTCTG
GTGCCTATTTAGCGCAGATCTCAAGAATTCAAGCATGTAGACATGAGCAT
GTTGATAAAACTTATTACTAATGCATGTTTCTTTATCCTcattattgaat
ttttcaacaaagcCATTTTCTAAGATAGAGCACAAGACACTATTCAAAAG
CTGTGTATCTCCTATTTTGACCTGTACTTTATAGATGGAAATAAACACAT
TCATTTCTTCAATACTGAGAAAGTTACATGCCAATATCTTTCCAAACAAA
TCCTTGCGAACATTGTCAATTTTCGAGGCAAGTTTTTTGGCATCTTCTTG
TGGGTAATGGTCAATCATATGATTCTCTGGTATGAAATAATTAGGGCAgc
acttttttaaaagatataCTTTCATGGTTTCTAATATCTCATCTACTAGT
TCAATTGTAGTGTGTTTCTCCCAAAAACCTATTGGATTCTTCTCGTTCAT
CCAGAAAATAATAGTCTTAGCAAAATAGGAGCAGAGGCCCTTCTCATTTT
CGTTATCCCCTTGCAAATGGTTTTTGAACAGTTCTTTACACAAGAAATAG
CATTTGAATTGTATAATACCCCACTTTTGAATCAATTGTTTTTCTATGAG
TGAGAAAGAAAACCTGAACTCTATATCAGGGTTCTCACTTTGGGCATGGG
CTACAGGAACAACATGGCAATCACTATTAAGAATCATAGGAACCTGTTGC
TGAAAACTGGGATGAAATTCTTTGTTGTCAAATCTCTTTTGTACAACATT
ATTAGATAGCATTTGGTAGCATTGCACCATATCTGTTTCTTTATTGTCTG
GTTTTGGAGTAATCATGAAAGCCGGTCCGTGTGGGATACCAATCCCAAAA
TCATGTATATGTTGTGTTTGGTTAAAGGCTTTCATACGATCCaagtataa
ttttccattcaaacttgcatagccattaaaccttttgtcagCGCATTTCT
GATGTACTAGCAATCTTGTATAGCCAGCATGGCAAAAATCTTGATCAAGA
ACCAATACTCCATCCTTATAATTCTTTGGAATATCACTAGCTGATTCTAC
AATGATGAACCTTTTGTCGATATACATAATATCATAATCTCCATGATTGG
TAATACCTTCAGCAAAGCTTCCAGAATAAATAGTGTCAATTCTATCACCA
CATTGGTATTCACAATGAAACACAGTAACTAGGTTGTCAAAGAGATAACA
AACTTCACGAATCTTTTCAATGACAACAAAGTCCAACATataattgacaa
tttcatttttaatttctttaagCTTCA Run BLAST on NCBI transcript from alignment at sc0000104:536850..541965+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010268 ID=TCONS_00010268|Name=TCONS_00010268|organism=Clytia hemisphaerica|type=transcript|length=5116bp|location=Sequence derived from alignment at sc0000104:536850..541965+ (Clytia hemisphaerica)
CTTTATTAAGGTATGAATGAAACACAAAACCAAgtaaaatgtctttaaaa
ataactgaaaaaaaatagctaaaatgacTGAATTATGTAAATATATTTAA
AGTTTACCCTGTCTAGGTATAAAAGTGTGTGAATGTGAAAACAAGCTAAC
GGACTTTGCCAACTATAACAGACTTacaaaaaaacctaaaaattgaatta
tcaGTAAACATTATCagtaaaaagattttgttgCTAGTAATTAACAATGA
ACAGTTTTATTGTCCTCCAGGTTTTTAGATGAATTAAGGCCTGAGAGCgt
atgaaacaaaataaaataataaattcacCAGCCAATACTTTTGTCACCAT
GCGATTTCTTTGTCACTTTTTGTCAACAAACTTTCTACCAGTAAGGTATG
TAAAAGTATTATTGAAGTGGGGCAAACTAAATTTGTTCATATAGCATTCG
GTATTAATTCTGATATAAATGTTTTCATTGTGATAAAAACTGTCTCAAAA
GCTCTAGGGGCAGAATCACAATAGATGTCAGAGGATCAACATGCCACAAA
CATGAGCTGAAAAAAGTGATCAGCTGGCTCCATTTAACTTGTTCTATGAA
ATCGAAAGGTTGATGTGTTTGAGGTGGTTCATAATATTTACACAAACCAC
ATTCAAActcttttgaagaaaaatctAACATCTCTTTTTCATTCAAGATT
GAAAGTTTGTAGCGAATGTAATTGGATGCATCAGTGTCACAAATCTTGTT
TTCAAGCTTTGATGTCAGCGCTTTCAGCAAGTTAAGAGATTCTTCATCCC
CAGTGATTCGATACAAAAGATAAGCACCGAAAAATGGTGGATAAAATCTG
ACTGCACCATGTATGTGGATTTCTTCGAAAACTCCTCGCAACAGCTCATC
TGACTGCAGGAAATTTGGACATCCCAAAATAGTATCACTGACAAAAAGAA
TAGGAACTGAAACAAATTTTggcttcaaatttttcactgcAATGTCTAca
aattgttttaaaatgtGCTCACTTTTGCCTTCATTTCCTACCACGTAGTA
ATACAAAGCAAGATAAATTGCACCACTAACACAATTATCGTTCAATGGTT
CAGGAAGCTCTACCTGGGAAAGAAACAAATTTTCCATATCCACCCATAAC
TTCCTGGTATCTTCTGCACTTCTATAATAATCTGGATCAAAATATCTTGT
CAATGCCGTCAATACTAGCCATCGAATCACGGTAATTTTTGCAAATCGCT
GCAAGATGGGATCATTGGTCAGGAATTGTAGGGCTTTCATGACATTGTTA
GTCTCTTGTGACCTATGCAAGGGGATATCATTCTTCCAATACAAGGTCTG
GTGCCTATTTAGCGCAGATCTCAAGAATTCAAGCATGTAGACATGAGCAT
GTTGATAAAACTTATTACTAATGAATGTTTCTTTATCCTcattattgaat
ttttcaacaaagcCATTTTCTAAGATAGAGCACAAGACACTATTCAAAAG
CTGTGCATCTCCTATTTTGACCTGTACTTTATAGATGGAAATAAACACAT
TCATTTCTTCAATACTGAGAAAGTTACATGCCAATATCTTTCCAAACAAA
TCCTTGCGAACATTGTCAATTTTCGAGACAAGTTTTTTGGCATCTTCTTG
TGGGTAATGGTCAATCATATGATTCTCTGGTATGAAATAATTAGGGCAgc
acttttttaaaagatataCTTTCATGGTTTCTAATATCTCATCTACTAGT
TCAATTGTAGTGTGTTTCTCCCAAAAATCTATTGGATTCTTCTCGTTCAT
CCAGAAAATAATAGTCTTAGCAAAATAGGAGCAGAGGCCCTTCTCATTTT
TGTTATCCCCTTGCAAATGGTTTTTGAACAGTTCTTTACACAAGAAATAG
CATTTGAATTGTATAATACCCCACTTTTGAATCAATTGTTTTTCTATGAG
TGAGAAAGAAAACCTGAACTCTATATCAGGGTTCTCACTTTGGGCATGGG
CTACAGGAACAACATGGCAATCACTATTAAGAATCATAGGAACCTGTTGC
TGAAAACTGGGATGAAATTCTTTGTTGTCAAATCTCTTTTGTACAACATT
ATTAGATAGCATTTGGTAGCATTGCACCATATCTGTTTCTTTATTATCTG
GTTTTGGAGTAATCATGAAAGCTGGTCCGTGTGGGATACCAATCCCAAAA
TCATGTATATGTTGTGTTTGGTTAAAGGCTTTCATGCGATCCaagtataa
ttttccattcaaacttgcatagccattaaaccttttgtcagCGCATTTCT
GATGTACTAGCAATCTTGTATAGCCAGCATGGCAAAAATCTTGATCAAGA
ACCAATACTCCATCCTTATAATTCTTTGGAATATCACTAGCTGATTCTAC
AATGATGAACCTTTTGTCGATATACATAATATCATAATCTCCATGATTGG
TAATACCTTCAGCAAAGCTTCCAGAATAAATAGTGTCAATTCTATCACCA
CATTGGTATTCACAATGAAACACAGTAACTAGGTTGTCAAAGAGATAACA
AACTTCACGAATCTTTTCAATGACAACAAAGTCCAACATataattgacaa
tttcatttttaatttctttaagCTTCATTTCCTATGTTTTTAACAATAGT
TACATAGAAAAGAAAAGTATCACataaaaaaaagatgaaaatcaataaaa
aataaacttagtttaaaattgcaccaaaatttgataaatgcaACTGTTTT
GATAGTAATCAGTGTTAGGCAAATTTAGTTCAGAAGATAAAATAATTGAC
AATTATCTTCCATGtttaaatcttatttttattttgttttctgtttttga
CCTTAAAATAACTAAGTCCCTTTGACCCTACTATATTGTTGGGcttctgg
gggtaaaaagtatATACCAATTTGTCTTTTTCCATTTAAACATATTTAAA
CATATTACATCTGACATGACAAACTTGAGGAGAAAGGGAAAGTCCAACAA
GAAGACTTATCAGATCAAAGAAGCAGTTATTTTTGCTTTCTACAGTTTGG
TCCCATATTTTACCCCAANCTTTTCAGCAAGTTAATAGATTCTTCATCCC
CAGTGATTCGATACAAAAGATAAGCACCGAAGAATGGTGGATAAAATCTG
ACTGCACCATGTATGTGGATTTCTTCGAAAACTCCTCGCAACAGCTCATC
TGACTGCAGGAAATTTGGACATTCCAAAATAGTATCACTGACAAAAAGAA
TAGGAACTGAAACAAATTTTGGCTTCAAATTTCTCACTGCAATGTCTAca
aattgttttaaaatgtGCTCACTTTTGCCTTCATTTCCTACCACGTAGTA
ATACAAAGCCAGATAAATTGCACCACTAACACAATTATCGTTCAATGGTT
CAGGAAGCTCTACCTGGGAAAGAAACAAATTTTCCATATCCACCCATAAC
TTNAAAACACAAAACCAAgtaaaatgtctttaaaaataactgaaaaaaaa
atagctaaaatgacTGAATTATGTAAATATATTTAAAGTTTACCCTGTCT
AGGTATAAAAGTGTGTGAATGTGAAAACAAGCTAACGGACTTTGCCAACT
ATAACAGACTTacaaaaaaacctaaaaattgaattatcaGTAAACATTAT
CagtaaaaagattttgttgCTAGTAATTAACAATGAACAGTTTTATTGTC
CTCCAGGTTTTTAGATGAATTAAGGCCTGAGAGCgtatgaaacaaaataa
aataataaattcacCAGCCAATACTTTTGTCACCATGCGATTTCTTTGTC
ACTTTTTGTCAACAAACTTTCTACCAGTAAGGTATGNAGGTGCCTATTTA
GCGCAGATCTCAAGAATTCAAGCATGTAGACATGAGCATGTTGATAAAAC
TTATTACTAATGCATGTTTCTTTATCCTcattattgaatttttcaacaaa
gcCATTTTCTAAGATAGAGCACAAGACACTATTCAAAAGCTGTGTATCTC
CTATTTTGACCTGTACTTTATAGATGGAAATAAACACATTCATTTCTTCA
ATACTGAGAAAGTTACATGCCAATATCTTTCCAAACAAATCCTTGCGAAC
ATTGTCAATTTTCGAGGCAAGTTTTTTGGCATCTTCTTGTGGGTAATGGT
CAATCATATGATTCTCTGGTATGAAATAATTAGGGCAgcacttttttaaa
agatataCTTTCATGGTTTCTAATATCTCATCTACTAGTTCAATTGTAGT
GTGTTTCTCCCAAAAACCTATTGGATTCTTCTCGTTCATCCAGAAAATAA
TAGTCTTAGCAAAATAGGAGCAGAGGCCCTTCTCATTTTCGTTATCCCCT
TGCAAATGGTTTTTGAACAGTTCTTTACACAAGAAATAGCATTTGAATTG
TATAATACCCCACTTTTGAATCAATTGTTTTTCTATGAGTGAGAAAGAAA
ACCTGAACTCTATATCAGGGTTCTCACTTTGGGCATGGGCTACAGGAACA
ACATGGCAATCACTATTAAGAATCATAGGAACCTGTTGCTGAAAACTGGG
ATGAAATTCTTTGTTGTCAAATCTCTTTTGTACAACATTATTAGATAGCA
TTTGGTAGCATTGCACCATATCTGTTTCTTTATTGTCTGGTTTTGGAGTA
ATCATGAAAGCCGGTCCGTGTGGGATACCAATCCCAAAATCATGTATATG
TTGTGTTTGGTTAAAGGCTTTCATACGATCCaagtataattttccattca
aacttgcatagccattaaaccttttgtcagCGCATTTCTGATGTACTAGC
AATCTTGTATAGCCAGCATGGCAAAAATCTTGATCAAGAACCAATACTCC
ATCCTTATAATTCTTTGGAATATCACTAGCTGATTCTACAATGATGAACC
TTTTGTCGATATACATAATATCATAATCTCCATGATTGGTAATACCTTCA
GCAAAGCTTCCAGAATAAATAGTGTCAATTCTATCACCACATTGGTATTC
ACAATGAAACACAGTAACTAGGTTGTCAAAGAGATAACAAACTTCACGAA
TCTTTTCAATGACAACAAAGTCCAACATataattgacaatttcattttta
atttctttaagCTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010268-exon-sc0000104-1491911889:536850..538199 | TCONS_00010268-exon-sc0000104-1491911889:536850..538199 | Clytia hemisphaerica | exon |
| TCONS_00010268-exon-sc0000104-1510915933:536850..538199 | TCONS_00010268-exon-sc0000104-1510915933:536850..538199 | Clytia hemisphaerica | exon |
| TCONS_00010268-exon-sc0000104-1575043694:536850..538199 | TCONS_00010268-exon-sc0000104-1575043694:536850..538199 | Clytia hemisphaerica | exon |
| TCONS_00010268-exon-sc0000104-1491911889:540689..541965 | TCONS_00010268-exon-sc0000104-1491911889:540689..541965 | Clytia hemisphaerica | exon |
| TCONS_00010268-exon-sc0000104-1510915933:540689..541965 | TCONS_00010268-exon-sc0000104-1510915933:540689..541965 | Clytia hemisphaerica | exon |
| TCONS_00010268-exon-sc0000104-1575043694:540689..541965 | TCONS_00010268-exon-sc0000104-1575043694:540689..541965 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000104 | supercontig | sc0000104:536850..541965 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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