TCONS_00010270 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010270
Unique NameTCONS_00010270
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1195

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010270 ID=TCONS_00010270|Name=TCONS_00010270|organism=Clytia hemisphaerica|type=transcript|length=1195bp
GAAAGCTAGAATTTggtaaaaacatttgaaattattgaaaaaaattatat
agaGGATTGAAGATCTCATACGATGTCCGATTTGACGATTCTATTCAGCA
TGGAGCAGTGTTAATGGGAAATAGGCAATTCTTTAACCCTAATCGCATTC
TCATTAGTTTACATATTGTTTGAAGTCTGGTATACACGATGATGGACAGG
ACAATAGTTTATACGGCATTTGTTGCATCATTCATAGTATTACCTGTCAT
CAAAGGTCAAAACGGATCTAAGAATAATTTAGAATCAGAACCGGGTAAGT
CAACATAGGATGACCAGAAAATATGCAACTATAAgtttttcttcacaaat
ttcGTTGAAAAAGAAACACTTCCAAATCAACGAGACATTAAAACATTACT
CTCCGGTTCTTGCAACATTAACAATACTTGTGGAATTCATCCTGCTGACG
ATTATCGTGGTTCACCATACACATATTTATCGTATGGTGAGAAACCAAAG
GATAAAATCACCACTGGAATATGGAATATGGATTCCTTAGATTTAGAAGG
ATGTTGGGGTTTTATATTTCTGGTCAAAGATTCTAAAGAAAATGTTGTGA
TGCATAAATATTATAACTTCAAAGATCTCAACAGGaATATAACTTTGgaa
tcattttcaaaagaatttatcaAATTCAATGCTTCGGCTTATGGAGAAGT
TTATACAGCCACTGGAATTCTTTTACCAACATCATCATTTACTGTTCAAA
AATCAACACTTTACCTACCAAAAAACGAATGTGAGACAACAGCATGGCAT
ATGGCGGTCAAATATTATTGGGCAATGTTTGATAAGCAACCAAAACAATG
CACTTTTTACAATTCGAATGCAATGTCCAACATAGCATCTGATTATTGTC
AACAATATAAATATCCATCAGATGAATACATTACAAAGAACATGGCAAGT
CAACTCCAAGAAAAACAATGTCATATCAGTGTTATGCCGCCACCATCATC
AAACGATTCACACAAAGGCCAACAAATAACTGACAAGTCTGTAATTTACA
CAGCCGTTTTTTCATGTATTGGATTTATACTTTTAGTACTTACTATTGTT
GGGATAGTTATGTTTTGCAAACGATATAAAACGGTTATTACTGTAAATGC
AAAAAACAGACCGAAAGTCTTTGATAACATTTAGTGCGAAAGCAN
Run BLAST on NCBI

transcript from alignment at sc0000104:563163..569223+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010270 ID=TCONS_00010270|Name=TCONS_00010270|organism=Clytia hemisphaerica|type=transcript|length=6061bp|location=Sequence derived from alignment at sc0000104:563163..569223+ (Clytia hemisphaerica)
GAAAGCTAGAATTTggtaaaaacatttgaaattattgaaaaaaattatat
agaGGATTGAAGATCTCATACGATGTCCGATTTGACGATTCTATTCAGCA
TGGAGCAGTGTTAATGGGAAATAGGCAATTCTTTAACCCTAATCGCATTC
TCATTAGTTTACATATTGTTTGAAGTCTGGTATACACGATGATGGACAGG
ACAATAGTTTATACGGCATTTGTTGCATCATTCATAGTATTACCTGTAAG
TGGCCATGTTTACACCCCCTTCCCAAAGACCCGTTTGGATCTTTTCAGCC
AGTGAGGGTAAAAATAGCGGACTGAAACTTCATAGGGATTGACATTTCCC
TGTTTTTTAAAGCACCCATTTTTTAGCAATGACAATGCCTGGGTCGTAAT
TTTGGCGAAACGAGAGAATTGATCAATCCTGCTTCAGCTTTGCCTCAGTC
AGTCTTCTCAACTGttatggaagaaaaaaattgcagtttttatgtAATCT
GAATCGCAAAATTAAGGAGGATCAAATTTTTTGGAGGATAGAAGCAGTTC
AGACTGAATGGAATTGCATATATGCGTGTAGACTCTAAAGGACTGATTAA
ATAGCAGTTTAAAAAAGAATATTATAGGATGTCCTTCAAAAATATATCTC
TTGCTTTTTTAGGTCATCAAAGGTCAAAACGGATCTAAGAATAATTTAGA
ATCAGAACCGGGTAAGTCAACATAGGGTATGTCAACAAAGTATGCGAGAT
CATTGATGTTCAGATTATTCTAATTTTGTTAAATGCTAGAAAATTGGTTG
TGATTCGTCTATAATTGGGCTTATTGGGCTATTTCATTAAAAATCCAAAC
AAGAGGGAGCGGGTGGTAGACCTTTTCAAGTTACAAAAAAAGGTTCTTGG
AAATGTAtgaataccccctggaaaatggtaaAGAAACCCTTCGAaacatt
cttttcataccttaaaatgACGGGGGACGAACTAGAATCAGTCTggaatt
ttagaataactttttaccctctgggaaaatgaaaaaaaaataccccGAAA
ATTCTTCTCGGATTACTCCCTGGAGATTTTTGGCCACACCTCTGTATATA
AAATACAAAGTAAGAACCGATTTTTCTTCGTTGAATTTTCTAGATGACCA
GAAAATATGCAACTATAAgtttttcttcacaaatttcGTTGAAAAAGGTA
TATTACACATTCTTAAATTATAATTCAGTTCTTAATGTAATCGACCCTAA
ACCAGAAAGATATTATATAAGAGTTACATAAGAGTAgtctttcttatttt
taccatggCCAGTCTGTCACTAGCACTGCAGGCACAATAATTCTTTTGAC
GATCGCATAATAAGGGCCTGGaaggtgttcattcaaaagctATTTCAAGT
TGACTTAAAATAGGTTAACTAAAGCACTTTCACCCCCTTCACCTGACAGT
TAAATCTTTATCCCTTAGCCGTAAAATAGTTTCCATTTTATTAGCTATTA
TTTTGCACacctctgtgtcacagaccctcttggaccccagccccactggc
aAAATTTTGATCCCtgatgggaaaataccctggaactTCAGCCCCACCAG
TAAATTTACACTCCCATTcgaaaatgtctaaaaattgcactccaaaacca
tcccaactggattttttaaccttggaacaataaaatttctatccccattg
ggattttaataGGGATTTatatccccactgaaaaaaaagttccactgggg
ctgtgagacaggggtgtttttgcATTCTCATGACATGTCAAGAGAGACTA
GTATCATTTTCCTGTCCTCCTTTCCATAACTAGAAACACTTCCAAATCAA
CGAGACATTAAAACATTACTCTCCGGTTCTTGCAACATTAACAATACTTG
TGGAATTCATCCTGCTGACGATTATCGTGGTTCACCATACACATATTTAT
CGTATGGTGAGAAACCAAAGGATAAAATCACCACTGGAATATGGAATATG
GATTCCTTAGATTTAGAAGGTTAGTGAGCACCCTTGTTTCCCTTCAAGTT
CAACAACGTTCATTTGACGTAACGACCGTATTGCCAAGCAAGATAGGGCA
TTCGGCTACAGAaaacaaaatggaaaatttttcccattttcaccctgaaa
agtggctaAAATAAGTAGacaaaaaatttgattattttataatttatacc
ctgaaatttccaccctgtcaaaaataaacatcttgaaaattagtaaattt
aagaccctgtcagatatcttcagagcctaaaaaagagacccaattttgcc
taagtgctcCCGGGGTCGCGTCATACCAAAGACTCTGTacttattactaa
aaaaagGTACTTTTTGCCTCTCCTGCTTGATATTCAGCAATTAAAAGAAG
GATTAAATGTaaatggagcaatccagggagaaaagAGTAGCAGcgttcaa
cgtttttctaacatttacaacgtccatataacgttagaaaaacgttgaaa
caacgttgtgtgccagctgggattacTCTCGATCAGCAATGTGTAATATC
TTGTATTAAGACTACCAAGGAGCTATAGTTACATATCTTAAATTATTTCT
GATTGTCGAAATTGGTGATTTCATCTTGTAGGATGTTGGGGTTATATGNG
TTACCTATCTTAAATTATTTCTGATTGTCGAAATTCATGATTTCATCTTG
TAGGATGTTGGGGTTTTATATTTCTGGTCAAAGATTCTAAAGAAAATGTT
GTGATGCATAAATATTATAACTTCAAAGATCTCAACAGGGTGAGCCCATG
TGTATAGTTTACAAGAATAATTCATGAGAATTTATAAAGACAAAAACGTT
TTCTAGTTTGAATTACAGACCTCTGTAGAGATTACGGGCCTAGTAAAGCA
TTCCAGAAATCTAAATAAATTTCCAGTCTAGTTATGAGCCCCCTCTCTAA
CAGTTAGCGTGATGTCGTGTTAGAGACATGATAACTAGAAGTAattttcg
tgattgcgtgatcgagGGTCAAAATGTGAAcgtgaattgaaaaacttttt
agtCTTGGCTTATTTTAAAGGGATGTGCTATTATCTAAGCTTTTGGCGAT
TGACAATACGAAATCAGAGAAGATCGTGATCAGTGTTACCCCTATTGGAG
CATCAGTTAAAACattcgaatatttttttatataaggaatacgtttataa
ggaacttgaggctgaataTGGTCCAAAAATTAAGGAATTGATAAGGAACT
GTTCAGGCTCAGAGTTTAAGGAACATTAAGGATTAAACTTGAACTTACCG
ACATATAAAATAACCTAAGATGAAATACCGCCTAAGTAAATAAGGAATTC
GGTAAGGAACTttcaggctgaaattctctggaaTAATAAGGAACTTCAGG
CTCGGAGCTAGCAGAAAGGTTCCTcatgaaaaaacgtgtactggtAATTT
ggtatttatgtttttttagaATATAACTTTGgaatcattttcaaaagaat
ttatcaAATTCAATGCTTCGGCTTATGGAGAAGTTTATACAGCCACTGGA
ATTCTTTTACCAACATCATCATTTACTGTTCAAAAATCAACACTTTACCT
ACCAAAAAGTAAGGTGAATCTGAATCTGATGGTATCCTAGCTAGTTCCGA
TGtttattttttcctctttctgaccaatcttgctccacatccgtgtcaat
ccaatttgaaaaaacttctgAATCAAAATTGACacaaacaatatcactct
tgtttaaaaacaaaacctttaaaactctTTTCTATTTCAGACGAATGTGA
GACAACAGCATGGCATATGGCGGTCAAATGTAAGTATTTTTAAAACCGGT
TAGATCCCATCCTAACGTTAATACTGAAAATCGTCCCTGGTGATAAAAAT
ACCCTGAAGATATAATAATTTTgtgaccctttcagagactccATAGCTAA
TTTATCggttttgtacccctttgagagacttttgagggttTAAAAAAAGA
GATCATTATGGCTTGCACACACCGACACCCATTTTGCCCAAGTAACCCCC
GGGCTTTCCTTTTATTCTTGAGTTCTCGAGTTCTTAACGGTAGACTTCAA
CGTTagctttttatttcaaaattggacaaAACCTAATACAATTATAAGCC
CTACAACAGGCATTATATTCTTTAACCTGACTTTCACTCATGATATGATT
TATATATGACGAAAGCACCCAAAATAGCCCAGaagtttaaaattcaaaat
attagtGGCAAAGTTTTTGGGTACTTCCTTACCTATATAACATTACttca
tgaatatcacgaattcCTGGATCTAGTAAAGTACatacattttatttttg
ctCCTTTCATTTTATAGATTATTGGGCAATGTTTGATAAGCAACCAAAAC
AATGCACTTTTTACAGTAAGTCTGTCTGACTATGAAATGAGATATACAGT
TGACTAACGTACTAATTTGAAATTGAACGGGAataatcttatttgttcga
attacagagagattcaaattatagaaaatattttaagagtctccttgacg
gggatttggaattagttcgaattatagaaaaggTTTGAATAACAGAACTT
CGACATTCTACTGTATTCAAATCAGATACTGAAATAGAAGCTCCTCATGC
TATCTCCAAGGGATAGGGGTGCTTTTACGAAGTAAATGTGAGGTACGTGC
ATGCCAGGTCTTCGAACCCTGACCCTTATTAGAGTTTACAGCCATCACGG
CggttaatgaaaaaaaaatagtgGTGGTAGAGCTTGGAACACCTCTACCA
TTGACTTCcgagcccgaagggctagaatcgagaCTCATGGATGGGATAAA
GGTAATTATTTCCCTTCCAGAACGCCCACGCgttgtttttacacaaacgc
tggattgaaagtaaaatctatccctaaatttcaaaagatgcaatcctcaa
aaacagaaaaaccgctagatacaatccgtcgttatgattgcggcgcgttc
taggcacgctctggatgggaaataagtggcttcactttttcttgcctggg
aaaggttagagagtctactctagcccttcgggatttaATTTCAATGACTT
CTACCATTGCTTACTCCATCCCAGGCTAAACATATTTTCTAATTTATCCC
ACCTCTTAGATtcggcttttccagaaaaaaaccctaTACCCCCttttgag
gaggtccatttccgttccaaggttTTGGAACTTAAGGTACTTTTTCTGTA
AGGTTTAATATGTGGCGAAactccatagggagatacaaaaatctgtcgaa
aataactggaattccatgggggtaggcttttaaatcctactaaaattcag
aattccagaggggtttaagcctgaaattgcccggaattccagggggttgc
agcatttccagccacaaaatgatggacctcctcaacaaggggtatacggt
ttttttctggaaaagcccattactCCCTTTTTAGTGaacttgtgtagacg
ataggattcataggcggttttagaccgcGTCAAACTTTCaaaggaagaga
tttgtaattgtaatttaattttattttaacgaACGTTGCACTCCCTCCCA
CGTGcgcttgctctattgtcttaaatccgccagtggGATCGACTAGACCT
CATTCTGCTAAATGCCATTTTCACTCTTCTTTGGATCTCCttgaaaacct
gaaaaaccTTTTTACGTTCTCTTATAGATTCGAATGCAATGTCCAACATA
GCATCTGATTATTGTCAACAATATAAATATCCATCAGATGAATACATTAC
AAAGAACATGGCAAGTCAACTCCAAGAAAAACAATGTCATATCAGTGTTA
TGCCGCCACCATCATCAAACGATTCACACAAAGGCCAACAAATAACTGAC
AAGTCTGTAATTTACACAGCCGTTTTTTCATGTATTGGATTTATACTTTT
AGTACTTACTATTGTTGGGATAGTTATGTTTTGCAAACGATATAAAACGG
TTATTACTGTAAATGCAAAAAACAGACCGAAAGTCTTTGATAACATTTAG
TGCGAAAGCAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005775XLOC_005775Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010270-exon-sc0000104-1491911889:563163..563407TCONS_00010270-exon-sc0000104-1491911889:563163..563407Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1510915933:563163..563407TCONS_00010270-exon-sc0000104-1510915933:563163..563407Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1575043694:563163..563407TCONS_00010270-exon-sc0000104-1575043694:563163..563407Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1491911889:563825..563888TCONS_00010270-exon-sc0000104-1491911889:563825..563888Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1510915933:563825..563888TCONS_00010270-exon-sc0000104-1510915933:563825..563888Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1575043694:563825..563888TCONS_00010270-exon-sc0000104-1575043694:563825..563888Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1491911889:564306..564359TCONS_00010270-exon-sc0000104-1491911889:564306..564359Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1510915933:564306..564359TCONS_00010270-exon-sc0000104-1510915933:564306..564359Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1575043694:564306..564359TCONS_00010270-exon-sc0000104-1575043694:564306..564359Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1491911889:564996..565181TCONS_00010270-exon-sc0000104-1491911889:564996..565181Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1510915933:564996..565181TCONS_00010270-exon-sc0000104-1510915933:564996..565181Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1575043694:564996..565181TCONS_00010270-exon-sc0000104-1575043694:564996..565181Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1491911889:565866..565951TCONS_00010270-exon-sc0000104-1491911889:565866..565951Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1510915933:565866..565951TCONS_00010270-exon-sc0000104-1510915933:565866..565951Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1575043694:565866..565951TCONS_00010270-exon-sc0000104-1575043694:565866..565951Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1491911889:566632..566770TCONS_00010270-exon-sc0000104-1491911889:566632..566770Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1510915933:566632..566770TCONS_00010270-exon-sc0000104-1510915933:566632..566770Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1575043694:566632..566770TCONS_00010270-exon-sc0000104-1575043694:566632..566770Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1491911889:566953..566991TCONS_00010270-exon-sc0000104-1491911889:566953..566991Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1510915933:566953..566991TCONS_00010270-exon-sc0000104-1510915933:566953..566991Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1575043694:566953..566991TCONS_00010270-exon-sc0000104-1575043694:566953..566991Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1491911889:567530..567577TCONS_00010270-exon-sc0000104-1491911889:567530..567577Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1510915933:567530..567577TCONS_00010270-exon-sc0000104-1510915933:567530..567577Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1575043694:567530..567577TCONS_00010270-exon-sc0000104-1575043694:567530..567577Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1491911889:568890..569223TCONS_00010270-exon-sc0000104-1491911889:568890..569223Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1510915933:568890..569223TCONS_00010270-exon-sc0000104-1510915933:568890..569223Clytia hemisphaericaexon
TCONS_00010270-exon-sc0000104-1575043694:568890..569223TCONS_00010270-exon-sc0000104-1575043694:568890..569223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:563163..569223 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0448721	0.0814802	0.0509725	0	0.153374	0.0462599	0.0877853	0.151605	0.150229	0	0.245167	8.73441	8.29239	8.52577	17.0206	4.3791	4.12161	0	1.33084	0.283624	0.356345	0.742602	1.439	0.309054	0.792992	0.189288	0.263273	1.71113	2.19271
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010270 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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