TCONS_00010271 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010271
Unique NameTCONS_00010271
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length424

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010271 ID=TCONS_00010271|Name=TCONS_00010271|organism=Clytia hemisphaerica|type=transcript|length=424bp
CGCATTCTCATTAGTTTACATATTGTTTGAAGTCTGGTATACACGATGAT
GGACAGGACAATAGTTTATACGGCATTTGTTGCATCATTCATAGTATTAC
CTGTCATCAAAGGTCAAAACGGATCTAAGAATAATTTAGAATCAGAACCG
GGTAAGTCAACATAGGATGACCAGAAAATATGCAACTATAAgtttttctt
cacaaatttcGTTGAAAAAGAAACACTTCCAAATCAACGAGACATTAAAA
CATTACTCTCCGGTTCTTGCAACATTAACAATACTTGTGGAATTCATCCT
GCTGACGATTATCGTGGTTCACCATACACATATTTATCGTATGGTGAGAA
ACCAAAGGATAAAATCACCACTGGAATATGGAATATGGATTCCTTAGATT
TAGAAGGATGTTGGGGTTATATGN
Run BLAST on NCBI

transcript from alignment at sc0000104:563306..565811+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010271 ID=TCONS_00010271|Name=TCONS_00010271|organism=Clytia hemisphaerica|type=transcript|length=2506bp|location=Sequence derived from alignment at sc0000104:563306..565811+ (Clytia hemisphaerica)
CGCATTCTCATTAGTTTACATATTGTTTGAAGTCTGGTATACACGATGAT
GGACAGGACAATAGTTTATACGGCATTTGTTGCATCATTCATAGTATTAC
CTGTAAGTGGCCATGTTTACACCCCCTTCCCAAAGACCCGTTTGGATCTT
TTCAGCCAGTGAGGGTAAAAATAGCGGACTGAAACTTCATAGGGATTGAC
ATTTCCCTGTTTTTTAAAGCACCCATTTTTTAGCAATGACAATGCCTGGG
TCGTAATTTTGGCGAAACGAGAGAATTGATCAATCCTGCTTCAGCTTTGC
CTCAGTCAGTCTTCTCAACTGttatggaagaaaaaaattgcagtttttat
gtAATCTGAATCGCAAAATTAAGGAGGATCAAATTTTTTGGAGGATAGAA
GCAGTTCAGACTGAATGGAATTGCATATATGCGTGTAGACTCTAAAGGAC
TGATTAAATAGCAGTTTAAAAAAGAATATTATAGGATGTCCTTCAAAAAT
ATATCTCTTGCTTTTTTAGGTCATCAAAGGTCAAAACGGATCTAAGAATA
ATTTAGAATCAGAACCGGGTAAGTCAACATAGGGTATGTCAACAAAGTAT
GCGAGATCATTGATGTTCAGATTATTCTAATTTTGTTAAATGCTAGAAAA
TTGGTTGTGATTCGTCTATAATTGGGCTTATTGGGCTATTTCATTAAAAA
TCCAAACAAGAGGGAGCGGGTGGTAGACCTTTTCAAGTTACAAAAAAAGG
TTCTTGGAAATGTAtgaataccccctggaaaatggtaaAGAAACCCTTCG
AaacattcttttcataccttaaaatgACGGGGGACGAACTAGAATCAGTC
Tggaattttagaataactttttaccctctgggaaaatgaaaaaaaaatac
cccGAAAATTCTTCTCGGATTACTCCCTGGAGATTTTTGGCCACACCTCT
GTATATAAAATACAAAGTAAGAACCGATTTTTCTTCGTTGAATTTTCTAG
ATGACCAGAAAATATGCAACTATAAgtttttcttcacaaatttcGTTGAA
AAAGGTATATTACACATTCTTAAATTATAATTCAGTTCTTAATGTAATCG
ACCCTAAACCAGAAAGATATTATATAAGAGTTACATAAGAGTAgtctttc
ttatttttaccatggCCAGTCTGTCACTAGCACTGCAGGCACAATAATTC
TTTTGACGATCGCATAATAAGGGCCTGGaaggtgttcattcaaaagctAT
TTCAAGTTGACTTAAAATAGGTTAACTAAAGCACTTTCACCCCCTTCACC
TGACAGTTAAATCTTTATCCCTTAGCCGTAAAATAGTTTCCATTTTATTA
GCTATTATTTTGCACacctctgtgtcacagaccctcttggaccccagccc
cactggcaAAATTTTGATCCCtgatgggaaaataccctggaactTCAGCC
CCACCAGTAAATTTACACTCCCATTcgaaaatgtctaaaaattgcactcc
aaaaccatcccaactggattttttaaccttggaacaataaaatttctatc
cccattgggattttaataGGGATTTatatccccactgaaaaaaaagttcc
actggggctgtgagacaggggtgtttttgcATTCTCATGACATGTCAAGA
GAGACTAGTATCATTTTCCTGTCCTCCTTTCCATAACTAGAAACACTTCC
AAATCAACGAGACATTAAAACATTACTCTCCGGTTCTTGCAACATTAACA
ATACTTGTGGAATTCATCCTGCTGACGATTATCGTGGTTCACCATACACA
TATTTATCGTATGGTGAGAAACCAAAGGATAAAATCACCACTGGAATATG
GAATATGGATTCCTTAGATTTAGAAGGTTAGTGAGCACCCTTGTTTCCCT
TCAAGTTCAACAACGTTCATTTGACGTAACGACCGTATTGCCAAGCAAGA
TAGGGCATTCGGCTACAGAaaacaaaatggaaaatttttcccattttcac
cctgaaaagtggctaAAATAAGTAGacaaaaaatttgattattttataat
ttataccctgaaatttccaccctgtcaaaaataaacatcttgaaaattag
taaatttaagaccctgtcagatatcttcagagcctaaaaaagagacccaa
ttttgcctaagtgctcCCGGGGTCGCGTCATACCAAAGACTCTGTactta
ttactaaaaaaagGTACTTTTTGCCTCTCCTGCTTGATATTCAGCAATTA
AAAGAAGGATTAAATGTaaatggagcaatccagggagaaaagAGTAGCAG
cgttcaacgtttttctaacatttacaacgtccatataacgttagaaaaac
gttgaaacaacgttgtgtgccagctgggattacTCTCGATCAGCAATGTG
TAATATCTTGTATTAAGACTACCAAGGAGCTATAGTTACATATCTTAAAT
TATTTCTGATTGTCGAAATTGGTGATTTCATCTTGTAGGATGTTGGGGTT
ATATGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005775XLOC_005775Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010271-exon-sc0000104-1491911889:563306..563407TCONS_00010271-exon-sc0000104-1491911889:563306..563407Clytia hemisphaericaexon
TCONS_00010271-exon-sc0000104-1510915933:563306..563407TCONS_00010271-exon-sc0000104-1510915933:563306..563407Clytia hemisphaericaexon
TCONS_00010271-exon-sc0000104-1575043694:563306..563407TCONS_00010271-exon-sc0000104-1575043694:563306..563407Clytia hemisphaericaexon
TCONS_00010271-exon-sc0000104-1491911889:563825..563888TCONS_00010271-exon-sc0000104-1491911889:563825..563888Clytia hemisphaericaexon
TCONS_00010271-exon-sc0000104-1510915933:563825..563888TCONS_00010271-exon-sc0000104-1510915933:563825..563888Clytia hemisphaericaexon
TCONS_00010271-exon-sc0000104-1575043694:563825..563888TCONS_00010271-exon-sc0000104-1575043694:563825..563888Clytia hemisphaericaexon
TCONS_00010271-exon-sc0000104-1491911889:564306..564359TCONS_00010271-exon-sc0000104-1491911889:564306..564359Clytia hemisphaericaexon
TCONS_00010271-exon-sc0000104-1510915933:564306..564359TCONS_00010271-exon-sc0000104-1510915933:564306..564359Clytia hemisphaericaexon
TCONS_00010271-exon-sc0000104-1575043694:564306..564359TCONS_00010271-exon-sc0000104-1575043694:564306..564359Clytia hemisphaericaexon
TCONS_00010271-exon-sc0000104-1491911889:564996..565181TCONS_00010271-exon-sc0000104-1491911889:564996..565181Clytia hemisphaericaexon
TCONS_00010271-exon-sc0000104-1510915933:564996..565181TCONS_00010271-exon-sc0000104-1510915933:564996..565181Clytia hemisphaericaexon
TCONS_00010271-exon-sc0000104-1575043694:564996..565181TCONS_00010271-exon-sc0000104-1575043694:564996..565181Clytia hemisphaericaexon
TCONS_00010271-exon-sc0000104-1491911889:565794..565811TCONS_00010271-exon-sc0000104-1491911889:565794..565811Clytia hemisphaericaexon
TCONS_00010271-exon-sc0000104-1510915933:565794..565811TCONS_00010271-exon-sc0000104-1510915933:565794..565811Clytia hemisphaericaexon
TCONS_00010271-exon-sc0000104-1575043694:565794..565811TCONS_00010271-exon-sc0000104-1575043694:565794..565811Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:563306..565811 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.116041	0	0.314607	0	0	0	0	0	0	0	0.414218	1.46677	0.438445	5.51392	4.72893	0.459146	1.82606	0.632627	0.321164	0	0	0	0.281107	0	0	0.263242	0	0.659256	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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