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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010273 ID=TCONS_00010273|Name=TCONS_00010273|organism=Clytia hemisphaerica|type=transcript|length=2032bp
GTTAATAAGACGTTGAGAAGGTTCAGTGctggtaaaaagaaaaagaaagG
TTACTCGGACACCATTTACAATGAGTTGAGAATCGTTCTGATTGGTCGAA
CAGGATCTGGTAAAAGCAGTACTGGGAATACACTTCTTGGTCGAAAAGCC
TTCGATGATGGAATCGGATTCGATGCAAAAACATCCGTCACGCGTTTAGA
GCAAACAGAACGTGATGGCCGGAGAATTACGGTCGTTGATACACCCGGAC
TACTAGATACCCGGAAGGAGTTTACGGAAGAACATACTATTCGGGAGATC
CTGAAATGTATCGCCCTGACAAGCCCTGGTATACATTCAGTATGTCTTGT
TGTTGAAGTTGGTCGTTTTACCGAGGAAAATGCAAAGGTATTTGAAACGT
TGATTAAACTTTTTGGAGAGGGccttaaaaattatttaattgtCATTTTC
ACACATGGTGACCAGTTGAGAAGGAGTAAAATGAATATCGAAGAATTGGT
CAAACAATCACAAAGTCCAGAGCTGAGGAATATAATTAATAACTATTCAC
AAGATTATATTGCAGTTGATAACACTAAAGATTACGAGTCGAATCCGGAC
GCTAGTCGaattctgatgaaaattgaCGAGTTAGTCCAACGTAATGGGGG
TCAATTTTATACAAGCGAAAGTTACCAAATTGCTGAAGAGTTCTTTAAAG
AAACGATGCTaaataagaagaaaaaaccACCAAGAAAACCACCAAGAAAG
AATAAGAAACAACCAGAAACTAAAGAACCAACCAAGATCGAATCACGACC
GTTACCAAGACTATACGAAGAGCATTCGTATGGTTTTTCAAGAGATGGGA
AAGTCTCTCATACATCATATTCAGGAGAAAACGTATACGACCGACCACCT
ACAAGAGCTACCGTTAAGAAGAAGGAATCAGACCGAAACTATGGTTCAGC
ATCTGGTCAATATGAAGCAGTGACCGAAAGTCCTCAACAACCAACTTGGT
CAGATTCGAATCCTTACGAGAGTAGATATTCACATATCCCTCTTCCATCG
TTGTATGAGCGTGATATTCAAACACCATTCACCAGTACTGCTTTGGATGG
ATCAAACTTATCGGTTCAACAAAGTGTAGAATCACCATATCAATCAATGC
ATAGCCCTGATAATGCCTACAAAGCTCAAACACCACTAGCAATCTTCAGA
GCTGTTCAATGTCCTCAATACGAGAAAATATCTTTAGTAGGCAATGCTGC
TGAAAGTCCAAAAGCTGAAGAAAGAAAGGTCGAAAATCAGCAGGTTGCCA
AACCACGTAAGCCACGTAAAGAAGAAAGCAAGATCCAGTATATGGCATGG
TTGACAGATAAAAAACCATCTGGAACAAGCAGCAAAGAAGAAGAGGAGGA
TTCGAACCAATCTCAAATCGAAATGGACCAGCGTAATAGATTTAACTCGC
AGTTCATTGAATCTCAGATTGCTTACATGAAGAAACTAGAAGAATCACGA
CTTCAGACGCTTAAACCCAAGGATGACGTTAAGAAACAGGTAGCACCTCA
ACATCTTCTTCAGGAGCAGGAGGAAGACCCAGTGGACCAGGCTCCGGATC
AAGCTGCAGAAGGGGTTGATCCAGAACAAGCCAGATATGAAGAAGAAGCT
AGAGCCGATTTTAGAGATCAAGTTCAAAATGACGATGGAGGATTTTTAGA
TAAAttgcaaaagaaatttgaaaatcttcaaaaaggaTTTAAAGATATTT
GCAAAAAGATAGCAAACATTTTTCGTAAAAAACGAGGTGAAGCTGATATT
GAATAGCTTTTAAATAGTAGGGGATGAAAAGTCTGACTGGGACTGTATTT
TTAGGAAGTATTGTATTAATTTTTCGTTGgtgattttgatttaaattttc
actggagttgatattttgaaatgaaatattaCTTGGGTATAAGTTATTTC
ATTCATCCGttcttaaaaagtaaaaaaaaatttattactgATATCATTTT
TTGACGAAtccattttaaattttaaatgttct Run BLAST on NCBI transcript from alignment at sc0000104:573739..578126+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010273 ID=TCONS_00010273|Name=TCONS_00010273|organism=Clytia hemisphaerica|type=transcript|length=4388bp|location=Sequence derived from alignment at sc0000104:573739..578126+ (Clytia hemisphaerica)
GTTAATAAGACGTTGAGAAGGTTCAGTGctggtaaaaagaaaaagaaagg
taGGAAGTTTATCATGAATTCAAGTCTTGATAAAGGACCATAAAGGTAGT
GGTCCCCTTTAATAAAGAGTAAACAACTTTATACTATCATTTGCAATCGT
TGACTAAATATAAGTATCTTGTAAGTGAAAATATTCCAATCTCTTTTATC
TCCGTTCTTCGGGTACTAAACGCTGACAGCGGGTTGTGATTAATAAGTCT
CAAGTCTcataaaaaagctctattccGAGCAAAATCTATCAACAACACTT
TTCCTTGTTACCACATAATTCATTTATGGAGACTTTAGAATAAAAATGTA
ATTTGTAGAAAAGGGGAATAAATGGTACTGAAACCCGGGAAATGATAgtt
actaggtttgcgaggtgacgtgTATGTCCgagacaaaagttgaaaatcga
cccttagagagaggaaaaattggcgtttttgggacccttataGAGACGAT
TTTCATTCGATTTTTatccatattttggaaaaacacgaccctttgagaga
ggaaatttcGATTCTCATGAATTTTgcacccttacagagactccatttgc
tttttaatggtttttgtacccctttgagcgACTTTCGAGGTTGCGAAAAA
Agaacccttatggctcgcacatacccggcacccattttgcctaagtaccc
accCCCCAAAACTTACAGTATAGGTTTCAAATTTCCCTATTGAAACCCTC
CTAcggtatttaaaaaaaggtttaaacGCCGAATTCTGAGGATTTTTGAT
CCTTATAacctaaaataataaaaaacaaagtactttcagttttgttttct
tttcatttctttgatCAAATTTTCAGATACAACACAGTTAGTTGTTGCTC
AATCGAACGTTGGAGCAAATGCAGTTGAGGAAATGGAAGGTAAATTCATT
AATGTTATTGGGCTGTctcattaaaaaaccatacatggggggggggtggt
TTACGAACCTTTTCAGCTCAAAATGTAATTATTGAAAGTGTGtgggatac
cccctggaaaatggcaataCCCTTGGACAagttcttttcataccttaaag
tgagggtagacgaactaaaatcagtcttttaccccctggaaattttagaa
taactttttatcccgttggaaaaatgggaaaatacagcccctggaaattt
ttctcggattacactctggaaatgttcgtccaccccctgaatggatataa
aatggaatggcccattaaaGATCCTGTTGTCTTGGTGCTATGGTGGAAAC
TTCAAACTCTTGTTTCAAGGCCCTCTCTCAAGCCCTGGTATGAGATCTCA
CATCCCAGTATCAGTATCCCGATGGTAGATTTGTCAGTGTTACAGTAGAA
TatttacacccctgtatcaataTTCTGGTAAAACCTTCACTCCCCTGTCT
TACAGTCCCAAATGGAACATGCACTTCTCTGTTTCACTACCTCTGTGGAA
AATTTATACCATGTCTTACTGCCTCGATGGAATCTTCACACACCTGTCCC
AGTGCTCGATGGAACCTTGGTACGGTTTCCATTAGGACCGTCTCACTCCT
GTCTTGGAACCTTtatacccctgtatcagtgcCTTGTTAGATCGGATAGA
TCCCTCATACTCCTGTCTCAGCGCCTTTAAGAACctttcacccctgtctc
aatgccCTGATGGAACCTTCTCATCTCCTTCGAAACCCTACCTCcacgct
tcttttttttataagaatacactttataacaatgctctaaaaatggcatt
cttagcttaaCTACCAAAATTCCATGAAGGCGATTTtattagcattattc
ttaatgtTCCATTGTTATCaaggacattcttataaattgtattcttataa
aaaaagaagcgtgtatgATATTAGATGGACGTTTGTCGACTGGGGCGGGG
ACTGTTTAAGAAATTAGATAGCACGCTGATAATTAATTAATTCGAGCTCA
CAAAGAATTACGAAGAGTCTTTTATATCCCACTTCCAAGATGAGTGAATG
AATATATTACTCTGAATTATATAGAAGTTTAGAATTAAAGCgtttcaaat
tataaaagttTAACTATTAATTTAAATAATAAaagcgaccgtagcatgaa
ggtagagcatccagctacggtgcgtaAGGTTGTGAGTTCGATCCccagct
gggtcataccaaatggtacttgatgcctctctgcttgatgatcagtaact
aaagagacggattaagggtaagtggagaaatccagggaaaggagtggcgc
cctacCTTActttcgggtagacagctagagaaaagggagcctttgggtcg
cccttgactgcggtcgcaaacttacttacttacttattcaATATTTCATT
TGCAGGTTACTCGGACACCATTTACAATGAGTTGAGAATCGTTCTGATTG
GTCGAACAGGATCTGGTAAAAGCAGTACTGGGAATACACTTCTTGGTCGA
AAAGCCTTCGATGATGGAATCGGATTCGATGCAAAAACATCCGTCACGCG
TTTAGAGCAAACAGAACGTGATGGCCGGAGAATTACGGTCGTTGATACAC
CCGGACTACTAGATACCCGGAAGGAGTTTACGGAAGAACATACTATTCGG
GAGATCCTGAAATGTATCGCCCTGACAAGCCCTGGTATACATTCAGTATG
TCTTGTTGTTGAAGTTGGTCGTTTTACCGAGGAAAATGCAAAGGTATTTG
AAACGTTGATTAAACTTTTTGGAGAGGGccttaaaaattatttaattgtC
ATTTTCACACATGGTGACCAGTTGAGAAGGAGTAAAATGAATATCGAAGA
ATTGGTCAAACAATCACAAAGTCCAGAGCTGAGGAATATAATTAATAACT
ATTCACAAGATTATATTGCAGTTGATAACACTAAAGATTACGAGTCGAAT
CCGGACGCTAGTCGaattctgatgaaaattgaCGAGTTAGTCCAACGTAA
TGGGGGTCAATTTTATACAAGCGAAAGTTACCAAATTGCTGAAGAGTTCT
TTAAAGAAACGATGCTaaataagaagaaaaaaccACCAAGAAAACCACCA
AGAAAGAATAAGAAACAACCAGAAACTAAAGAACCAACCAAGATCGAATC
ACGACCGTTACCAAGACTATACGAAGAGCATTCGTATGGTTTTTCAAGAG
ATGGGAAAGTCTCTCATACATCATATTCAGGAGAAAACGTATACGACCGA
CCACCTACAAGAGCTACCGTTAAGAAGAAGGAATCAGACCGAAACTATGG
TTCAGCATCTGGTCAATATGAAGCAGTGACCGAAAGTCCTCAACAACCAA
CTTGGTCAGATTCGAATCCTTACGAGAGTAGATATTCACATATCCCTCTT
CCATCGTTGTATGAGCGTGATATTCAAACACCATTCACCAGTACTGCTTT
GGATGGATCAAACTTATCGGTTCAACAAAGTGTAGAATCACCATATCAAT
CAATGCATAGCCCTGATAATGCCTACAAAGCTCAAACACCACTAGCAATC
TTCAGAGCTGTTCAATGTCCTCAATACGAGAAAATATCTTTAGTAGGCAA
TGCTGCTGAAAGTCCAAAAGCTGAAGAAAGAAAGGTCGAAAATCAGCAGG
TTGCCAAACCACGTAAGCCACGTAAAGAAGAAAGCAAGATCCAGTATATG
GCATGGTTGACAGATAAAAAACCATCTGGAACAAGCAGCAAAGAAGAAGA
GGAGGATTCGAACCAATCTCAAATCGAAATGGACCAGCGTAATAGATTTA
ACTCGCAGTTCATTGAATCTCAGATTGCTTACATGAAGAAACTAGAAGAA
TCACGACTTCAGACGCTTAAACCCAAGGATGACGTTAAGAAACAGGTAGC
ACCTCAACATCTTCTTCAGGAGCAGGAGGAAGACCCAGTGGACCAGGCTC
CGGATCAAGCTGCAGAAGGGGTTGATCCAGAACAAGCCAGATATGAAGAA
GAAGCTAGAGCCGATTTTAGAGATCAAGTTCAAAATGACGATGGAGGATT
TTTAGATAAAttgcaaaagaaatttgaaaatcttcaaaaaggaTTTAAAG
ATATTTGCAAAAAGATAGCAAACATTTTTCGTAAAAAACGAGGTGAAGCT
GATATTGAATAGCTTTTAAATAGTAGGGGATGAAAAGTCTGACTGGGACT
GTATTTTTAGGAAGTATTGTATTAATTTTTCGTTGgtgattttgatttaa
attttcactggagttgatattttgaaatgaaatattaCTTGGGTATAAGT
TATTTCATTCATCCGttcttaaaaagtaaaaaaaaatttattactgATAT
CATTTTTTGACGAAtccattttaaattttaaatgttct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010273-exon-sc0000104-1491911889:573739..573787 | TCONS_00010273-exon-sc0000104-1491911889:573739..573787 | Clytia hemisphaerica | exon |
| TCONS_00010273-exon-sc0000104-1510915933:573739..573787 | TCONS_00010273-exon-sc0000104-1510915933:573739..573787 | Clytia hemisphaerica | exon |
| TCONS_00010273-exon-sc0000104-1575043694:573739..573787 | TCONS_00010273-exon-sc0000104-1575043694:573739..573787 | Clytia hemisphaerica | exon |
| TCONS_00010273-exon-sc0000104-1491911889:576144..578126 | TCONS_00010273-exon-sc0000104-1491911889:576144..578126 | Clytia hemisphaerica | exon |
| TCONS_00010273-exon-sc0000104-1510915933:576144..578126 | TCONS_00010273-exon-sc0000104-1510915933:576144..578126 | Clytia hemisphaerica | exon |
| TCONS_00010273-exon-sc0000104-1575043694:576144..578126 | TCONS_00010273-exon-sc0000104-1575043694:576144..578126 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000104 | supercontig | sc0000104:573739..578126 + |
Blast
BLAST of TCONS_00010273 vs. Swiss-Prot (Human)
Match: GIMA4 (GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 1.138e-36 Identity = 79/209 (37.80%), Postives = 127/209 (60.77%), Query Frame = 1
Query: 70 NELRIVLIGRTGSGKSSTGNTLLGRKAFDDGIGFDAKTSVTRLEQTERDGRRITVVDTPGLLDTRKEFTEEHTIREILKCIALTSPGIHSVCLVVEVGRFTEENAKVFETLIKLFGEGLKNYLIVIFTHGDQLRRSKMNIEELVKQSQSPE-LRNIINNYSQDYIAVDN-TKDYESNPDASRILMKIDELVQRNGGQFYTSESYQIAEE 690
++LRIVL+G+TG+GKS+TGN++LGRK F G + T + + VVDTPG+ DT E T +EI++CI LTSPG H++ LVV +GR+TEE K E ++K+FGE ++++I+IFT D L N+ + ++ ++PE ++++++ + Y A++N E +++L I +V+ N YT+ YQ AEE
Sbjct: 29 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDT--EVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDL--GDTNLHDYLR--EAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEE 231
The following BLAST results are available for this feature:
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