TCONS_00010294 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010294
Unique NameTCONS_00010294
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2176

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010294 ID=TCONS_00010294|Name=TCONS_00010294|organism=Clytia hemisphaerica|type=transcript|length=2176bp
CCTTACAGACTTTACTCTATATCTCGAAACTTCCTTAACTCGGACAAGTC
GGTGTCCCCCTTGGTATGTGTCCGAATTTAGACTCCACTGAAAAATCTTA
CTTTATTCCTCAGCGCTAATATtgacatcagcaaaaaaatatttagtatc
GAGTTATGAAAATACTAATGTGATAAacgatacacgctttttttatttat
aagaatacactttataagaatgtccatgatgaaaatggccaaaaaattaa
gaatatggtaagaatatcaccatcatggaatttaacaactgaacctaaga
atgccgtTTTTAATGCATTTCAACCTGTacattgccaatttcgatctaac
cctaagaatgttgtaagaatatttttggatgattttcgccaaaaagttaa
gaatatccatgatgaaatgaaaaaacaccattcttataaaaaaaaaaaag
cgtgtaaccgATAATAATTGACAGACCGAAGAAGAAGCACAATGTCGGAA
AGAACCACCAACACTAAGGTGGTTCTGATAGCCATCGATTCCAGCAATAC
TTTATTGTTAAAATGTTGTATTGaaatgctgaagatgagtaaattAGGTG
ATTATCATTTCCATTTGACTACTGTAAGTCAGGATGAAGAAACGCTGTCA
AACCTGGTTGTTTTGAAGGAATTGAACCATCGGTTATTTTTCCATCAAAC
AGATGTCCGAAGTGACGATTCTGTCCGACAAACCATTCACAATGTCCTAC
AAATCGAATCCCGTATAGACGTCCTTGGTACTAAGAAATGAAATATTACC
TATCCATACCCATCATCTTATATCAATAACTAGTCTGCCACATTGAGAAT
CGAACGATAGTCGACGCATGCAGTACAAACTCAAATACTGTCAATCACGT
ATTGGAAGAAAACTTTTATCCAAATTTTCGTTTTATTACAAACATTATCG
AACACATGAAATCATCGTCTAAGGGTGGTTTAGAAAATGATGAAAAGGGC
GGTAATGATGGCGGGAAAATTATATTGTTGAATTCGTATGCTGGCATGCA
AGGGATTTCACACTCGTCAGCTTTTTGTGCAACACGATTCGCATTGAATG
GTTTGGTACAGTCTGCTGCTGCTGAAACTCTTTCAAGTAAAATTAGgttt
tgcgTATTACAGACTGTATTACAAAAAATGCCTTGTGCTCTTCTATCGAC
CGAGGCAAATGAAACCGAACCACTATCGAATGAAGATCGAGAGCTTATCC
AATCGATTGATGACGATTTAGAAAAACGAAAATTACTCGCAGAATACAGC
ATATCGGATACATCAAAGtctttaaaaacattatttacgaCGGATTTCCC
AGATTTACGACAATTTACGAACAAAGCTATAAAAAGCGAGGCTTACGATA
AATTTATTGACCCTAAAGGCATGAAGACATTATCGGAGACAGTGCAATTT
TATTTGAACCTTGACTTGGACGAGTTTCGCGAAGAAAGAAAgacaaaaat
gaaattcaatttattgaagaaaacttcgtcacattttagatGCACCAGTT
CAAATATcgtgatttgattttgattctgCAAACAGaatctttcagaattt
gaaaTACTGAGTAAGCAGAGAACAGAAAAAGGATCCCTTTCATGATTTGA
AATATCCCACTCAAGGCGGGTgtcgttgtttcaacattcacaTAACGTTC
ATATCGTCATAAATAACAtgagatgaacgttgaaacattGTGTGGCAGCT
GGGGTAGAATGGAACTTTTATAAGATGTCAAACCTTATTTTGAAAGAGAC
TCTTAAATGAAATACGAAATGCAAAGTTGCAACGTTAAGAAGATATCCAT
TAAACGTCCACATCCTTctataaacgttgaaacaacataaCTAATATTCT
TTGTCACAGTTACTTACGAGAAATAAATCATATACGTTATAAATACAGTG
AAGTCTCATTCGAatatctctttaactcgaacaaatcttATTGTCTCTTC
CTTAtctaaaccttactccataactcgaaatttctttaGCTCGAACAAAT
TTATGTTCCCCGTTCAGTGTTCGAGAAATGGAGGCTCTATTAATACCATT
TACCTACACAACCTTGGAAATAGATGCTGTTTATTCTCTTCGTCGATCGA
TGACTTTAAATTACCTTTCCAACGAG
Run BLAST on NCBI

transcript from alignment at sc0000104:119094..122994-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010294 ID=TCONS_00010294|Name=TCONS_00010294|organism=Clytia hemisphaerica|type=transcript|length=3901bp|location=Sequence derived from alignment at sc0000104:119094..122994- (Clytia hemisphaerica)
CCTTACAGACTTTACTCTATATCTCGAAACTTCCTTAACTCGGACAAGTC
GGTGTCCCCCTTGGTATGTGTCCGAATTTAGACTCCACTGAAAAATCTTA
CTTTATTCCTCAGCGCTAATATTGACATCAGCAAAAAAATATTTAGTATC
GAGTTATGAAAATACTAATGTGATAAACGATACACGCTTTTTTTATTTAT
AAGAATACACTTTATAAGAATGTCCATGATGAAAATGGCCAAAAAATTAA
GAATATGGTAAGAATATCACCATCATGGAATTTAACAACTGAACCTAAGA
ATGCCGTTTTTAATGCATTTCAACCTGTACATTGCCAATTTCGATCTAAC
CCTAAGAATGTTGTAAGAATATTTTTGGATGATTTTCGCCAAAAAGTTAA
GAATATCCATGATGAAATGAAAAAACACCATTCTTATAAAAAAAAAAAAG
CGTGTAACCGATAATAATTGACAGACCGAAGAAGAAGCACAATGTCGGAA
AGAACCACCAACACTAAGGTGGTTCTGATAGCCATCGATTCCAGCAATAC
TTTATTGTTAAAATGTTGTATTGAAATGCTGAAGATGAGTAAATTAGGTG
ATTATCATTTCCATTTGACTACTGTAAGTCAGGATGAAGAAACGCTGTCA
AACCTGGTTGTTTTGAAGGTATGTTCAATTCCCTTAATCACACAACTATG
GATTTTATTTCCTTTCTCCATACTCTTGGTGTCTAATAAATTACAAGCCT
CCCTGTTTGTTAATTTTTCGTTTGCTTCCCAACTCCCCCGGACCTTGTTA
GGACCCCATTCAAACTCTTTTAAATACTAATATTTCTACCATTTTCTTAG
GAATTGAACCATCGGTTATTTTTCCATCAAACAGATGTCCGAAGTGACGA
TTCTGTCCGACAAACCATTCACAATGTCCTACAAATCGAATCCCGTATAG
ACGTCCTTGGTACTAAGAAATGAAATATTACCTATCCATACCCATCATCT
TATATCAATAACTAGGTAGTTCTCTCCCCGAGCACTTACCTATTTAAAGC
CTTCCCTTCTTAACTTTTTAAGTTTTAAGCCTAAAAATGTGTTTAACGTG
TTGTTATATTCACCATTTTTTGAGTAATTTTGAGCAATTTTCTAAGAAAG
CAGTTGTTTTAAGTCCACAAAGCATTGAAATGTACTTACTTGCTCTTATT
ATTTATGCCTTCGAGCCTTCTGGTTTTAAAGTATGTTCTTCTAAAAAACG
TGTGTCATTTTACAATAATGCCCTTTTTGGTTGAGGTCCCTAATTTTTTT
AAACTATATATGCTATATTCTTTTCGATAAAATATTGACATAATATTTCA
CTTCAGGCCCAGTCCCCAGTTCTGACATAGCGTCAGCCCCCCTGCTAGTT
GGGGAGGAGTTACACCCTCCAAAAAGCCAAAAAAGGCTAAAGATGTTTCA
AATATTTGGGGGGACCTAGTGTACTTGGGGGAGCTGATATCTCATCATTC
AACGTGGGGGCTGAATACTTCATCTTAATGGTTGGTTTCAATTACTCAAC
TTAAAGCTNAATGTCATAAACTTTTGGGGGACTTAAAACTCAGGGGGGAC
CTTATTTTTGCTTGGGACCTAAACCCAGGCTGACGCTATGCCCGATAACC
AAAAGATGAATTTGTATACGTATGGTATTATTCACCTAGTGTTTGATTAT
TCAATATTTTTTTTCATTGCAGTCTGCCACATTGAGAATCGAACGATAGT
CGACGCATGCAGTACAAACTCAAATACTGTCAATCACGTATTGGAAGAAA
ACTTTTATCCAAATTTTCGTTTTATTACAAACATTATCGAACACATGAAA
TCATCGTCTAAGGGTGGTTTAGAAAATGATGAAAAGGGCGGTAATGATGG
CGGGAAAATTATATTGTTGAATTCGTATGCTGGCATGCAAGGGATTTCAC
ACTCGTCAGCTTTTTGTGCAACACGATTCGCATTGAATGGTTTGGTACAG
TCTGCTGCTGCTGAAACTCTTTCAAGTAAAATTAGGTAAGAATACAAATA
TTTTTTATAAGAGCGTTTATATCTATCCGCAGACACGTGTTTCGTCCTTC
CCAGGACTCATCAGTGCGGCTTGGGTAAGCGAGAATAGACTGCTGTTGTC
ACCAGAGTGCTCAAACAGTCGGGAACACTATATGGAAAAGGCAACTATTG
CCTTATGGTTAACGGAAATTATTTCCCGAACGGGAAGGTGGAAAACTTCC
CGAAATGGCTAGAATTTCCAAATTGGGAAGTTCATCAGTTTCCCGATCGG
GAAAGTGGCCTCTGAGAACTCCGGAAATGCCTGTGGAAAGTTAAAAACTT
AAAATAAATAATATTCACCAGGTATTTAAAAAATCTACTGGGTAATCGCT
TCTTGATTCTACTTTCCCCATTCCCAATTAAAAACTTTCCCTATTTGGAA
ACTTTTGCTCGATCGGGAAACAAAAATTTGCTTTGTTTACAAAAATTCTA
TTTCTCGTTCGGGAACGATGAAAAGTGATGAAATTTTCAATCTGGAAACA
GTTTCATTTTCGGGTCATTTCATTTTCACCTTCCCGTTAAGGCAATAGTT
GCTTTTTTCATGTAGTGGTACCGACTGTCAAAACACTAAGTGTTGAGCTT
TGCATAAGAACGTTTTTGCTTTGCTTATCAGTCGTTATTCTGCTTTGTGT
ACTTTGGGAAAGTTAGAAAAAGAGAAAATAAAAAATGTAACAGGCTTGTT
TCGTAGATTCATCAGCCTGATCTAGATACTTCAAAGTATCTTTGTACCAA
AAATAGTTTCCTAGCACTTAAGTGTTTTTCTTTCTTTTCCATCTTTATTT
TTGCCTTGTTTTTTTTTTCAGGTTTTGCGTATTACAGACTGTATTACAAA
AAATGCCTTGTGCTCTTCTATCGACCGAGGCAAATGAAACCGAACCACTA
TCGAATGAAGATCGAGAGCTTATCCAATCGATTGATGACGATTTAGAAAA
ACGAAAATTACTCGCAGAATACAGCATATCGGATACATCAAAGTCTTTAA
AAACATTATTTACGACGGATTTCCCAGATTTACGACAATTTACGAACAAA
GCTATAAAAAGCGAGGCTTACGATAAATTTATTGACCCTAAAGGCATGAA
GACATTATCGGAGACAGTGCAATTTTATTTGAACCTTGACTTGGACGAGT
TTCGCGAAGAAAGAAAGACAAAAATGAAATTCAATTTATTGAAGAAAACT
TCGTCACATTTTAGATGCACCAGTTCAAATATCGTGATTTGATTTTGATT
CTGCAAACAGAATCTTTCAGAATTTGAAATACTGAGTAAGCAGAGAACAG
AAAAAGGATCCCTTTCATGATTTGAAATATCCCACTCAAGGCGGGTGTCG
TTGTTTCAACATTCACATAACGTTCATATCGTCATAAATAACATGAGATG
AACGTTGAAACATTGTGTGGCAGCTGGGGTAGAATGGAACTTTTATAAGA
TGTCAAACCTTATTTTGAAAGAGACTCTTAAATGAAATACGAAATGCAAA
GTTGCAACGTTAAGAAGATATCCATTAAACGTCCACATCCTTCTATAAAC
GTTGAAACAACATAACTAATATTCTTTGTCACAGTTACTTACGAGAAATA
AATCATATACGTTATAAATACAGTGAAGTCTCATTCGAATATCTCTTTAA
CTCGAACAAATCTTATTGTCTCTTCCTTATCTAAACCTTACTCCATAACT
CGAAATTTCTTTAGCTCGAACAAATTTATGTTCCCCGTTCAGTGTTCGAG
AAATGGAGGCTCTATTAATACCATTTACCTACACAACCTTGGAAATAGAT
GCTGTTTATTCTCTTCGTCGATCGATGACTTTAAATTACCTTTCCAACGA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005781XLOC_005781Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010294-exon-sc0000104-1575043694:122327..122994TCONS_00010294-exon-sc0000104-1575043694:122327..122994Clytia hemisphaericaexon
TCONS_00010294-exon-sc0000104-1575043694:121980..122144TCONS_00010294-exon-sc0000104-1575043694:121980..122144Clytia hemisphaericaexon
TCONS_00010294-exon-sc0000104-1575043694:120960..121272TCONS_00010294-exon-sc0000104-1575043694:120960..121272Clytia hemisphaericaexon
TCONS_00010294-exon-sc0000104-1575043694:119094..120123TCONS_00010294-exon-sc0000104-1575043694:119094..120123Clytia hemisphaericaexon
TCONS_00010294-exon-sc0000104-1510915933:122327..122994TCONS_00010294-exon-sc0000104-1510915933:122327..122994Clytia hemisphaericaexon
TCONS_00010294-exon-sc0000104-1510915933:121980..122144TCONS_00010294-exon-sc0000104-1510915933:121980..122144Clytia hemisphaericaexon
TCONS_00010294-exon-sc0000104-1510915933:120960..121272TCONS_00010294-exon-sc0000104-1510915933:120960..121272Clytia hemisphaericaexon
TCONS_00010294-exon-sc0000104-1510915933:119094..120123TCONS_00010294-exon-sc0000104-1510915933:119094..120123Clytia hemisphaericaexon
TCONS_00010294-exon-sc0000104-1491911889:122327..122994TCONS_00010294-exon-sc0000104-1491911889:122327..122994Clytia hemisphaericaexon
TCONS_00010294-exon-sc0000104-1491911889:121980..122144TCONS_00010294-exon-sc0000104-1491911889:121980..122144Clytia hemisphaericaexon
TCONS_00010294-exon-sc0000104-1491911889:120960..121272TCONS_00010294-exon-sc0000104-1491911889:120960..121272Clytia hemisphaericaexon
TCONS_00010294-exon-sc0000104-1491911889:119094..120123TCONS_00010294-exon-sc0000104-1491911889:119094..120123Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:119094..122994 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.114603	0.100968	0.180787	0.163121	1.29577	0.981073	5.91527	4.62852	2.67093	4.50628	2.43181	1.98056	4.22987	3.07321	1.84379	1.91211	2.00481	1.97379	3.38332	4.95162	4.81528	4.01756	1.58481	2.7463	1.58533	1.40566	1.83764	0.0766714	1.40328	1.13449
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010294 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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