TCONS_00010364 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010364
Unique NameTCONS_00010364
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010364 ID=TCONS_00010364|Name=TCONS_00010364|organism=Clytia hemisphaerica|type=transcript|length=1378bp
ATCTCCCTTTAGATAACCTTGGCTTTCAGTTtgtattttcagtttcagtt
tctgAAAATGCGTAACAGGGTACACCACGTGAAGGATAAGCCATAGGATT
TTGTACTCCACCCTAAAAGGTTACCTTCTGATCTCTAATAAAAATAAGTT
GATTCGTATTAATTTACAGGTTTTATCTGCTTACTTTCAATGattatcaa
agaaaaattaaaacaggCATTGATGGTTTACACTTTCAAGGAGAATTGTA
TTAGAGGCTAATCATAAAAAGTCGTAACTAAGGATTGATGTTTAACATTC
TACTTTCAAAAATGTCTTCAAAAACGTAACATTTGACTAGACACCCCATA
AAGACAGGTAGAGACCAAAAGGTACTTTTAAGGTACAAGGCTGTTTCACT
GCGTCAGGCTACATTAGAAACATGGTTTACCCTTATTGCAACAAACAACT
GTCAGCATGTTACAAGGGTCACTGTGAAAACAACTATCAACATTCACAGT
GTCATGCTCTGTATGTGACAAACAACTATCAACATGTCACCAGAGGGTGG
AAACAACTATCAACATCCACCTTTGATGGAAACAACTATCAACATCCATC
AAATACCTGTCTCTAACCATGTGCAGGAAAGAAAATCAGCCTTGATTTAA
AATATTGCCAGTGAAACGAAATTAGaagtaataaaagtaaaaaGGTATTT
AACACGGCAAAAACTTTATAACAACAATAATAACATAAAATAGTTGCTTA
TCAAGAGTCTTGAAAACAAGTTAAACCATCATTGACAAAGCCATCAAATT
CACATAATAGTTCTCTGTAAGTATTCAAATCGCTGTAGTGGCCAAATGTT
TGAAGAGTCTCGTGACTCAAAAGTTTTAacctttcttcttcttccctTCT
TTGTGGCATCCATGGATGATTATTGATATAATTTAGCCTATCATATGGCA
CTTTTTCGACCAAAGCAACATTTTCTAGTTTAGATGCCCTACTGAGGGCA
GTATCAAGTTATGCCAAGGTTAAGTTTCTCCATAAAAATCTCTTTATTTA
ACTTTATCCGAATATGAGTACTTGGCTCATTAGGACCTATTGTCATACCT
TGGCTTTTTGATATAGGTATACAATAACCAGGCATCAAGGGCAACCCCCT
TCTAGAGCAACAGTTATTATCACACCGTGCTTCATTGACAGGTATAGGAA
CCCATGTTGGGTGTTCTGGAAGCCAGCTTGGGCCTTTGTATCTTGGGAAA
TCTACAACAATTGCTTCTGGAAATGATGGAGGTGCTTTTCCCTCAGCATA
TAATATTGCAATCACTTTCCCAATTGCTCCATTATACAATCCAAGAGGTG
TTAAGCTGAGCTGATTTTTAGTCAAAAG
Run BLAST on NCBI

transcript from alignment at sc0000104:435234..436611

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010364 ID=TCONS_00010364|Name=TCONS_00010364|organism=Clytia hemisphaerica|type=transcript|length=1378bp|location=Sequence derived from alignment at sc0000104:435234..436611 (Clytia hemisphaerica)
CTTTTGACTAAAAATCAGCTCAGCTTAACACCTCTTGGATTGTATAATGG
AGCAATTGGGAAAGTGATTGCAATATTATATGCTGAGGGAAAAGCACCTC
CATCATTTCCAGAAGCAATTGTTGTAGATTTCCCAAGATACAAAGGCCCA
AGCTGGCTTCCAGAACACCCAACATGGGTTCCTATACCTGTCAATGAAGC
ACGGTGTGATAATAACTGTTGCTCTAGAAGGGGGTTGCCCTTGATGCCTG
GTTATTGTATACCTATATCAAAAAGCCAAGGTATGACAATAGGTCCTAAT
GAGCCAAGTACTCATATTCGGATAAAGTTAAATAAAGAGATTTTTATGGA
GAAACTTAACCTTGGCATAACTTGATACTGCCCTCAGTAGGGCATCTAAA
CTAGAAAATGTTGCTTTGGTCGAAAAAGTGCCATATGATAGGCTAAATTA
TATCAATAATCATCCATGGATGCCACAAAGAagggaagaagaagaaaggt
TAAAACTTTTGAGTCACGAGACTCTTCAAACATTTGGCCACTACAGCGAT
TTGAATACTTACAGAGAACTATTATGTGAATTTGATGGCTTTGTCAATGA
TGGTTTAACTTGTTTTCAAGACTCTTGATAAGCAACTATTTTATGTTATT
ATTGTTGTTATAAAGTTTTTGCCGTGTTAAATACCtttttacttttatta
cttCTAATTTCGTTTCACTGGCAATATTTTAAATCAAGGCTGATTTTCTT
TCCTGCACATGGTTAGAGACAGGTATTTGATGGATGTTGATAGTTGTTTC
CATCAAAGGTGGATGTTGATAGTTGTTTCCACCCTCTGGTGACATGTTGA
TAGTTGTTTGTCACATACAGAGCATGACACTGTGAATGTTGATAGTTGTT
TTCACAGTGACCCTTGTAACATGCTGACAGTTGTTTGTTGCAATAAGGGT
AAACCATGTTTCTAATGTAGCCTGACGCAGTGAAACAGCCTTGTACCTTA
AAAGTACCTTTTGGTCTCTACCTGTCTTTATGGGGTGTCTAGTCAAATGT
TACGTTTTTGAAGACATTTTTGAAAGTAGAATGTTAAACATCAATCCTTA
GTTACGACTTTTTATGATTAGCCTCTAATACAATTCTCCTTGAAAGTGTA
AACCATCAATGcctgttttaatttttctttgataatCATTGAAAGTAAGC
AGATAAAACCTGTAAATTAATACGAATCAACTTATTTTTATTAGAGATCA
GAAGGTAACCTTTTAGGGTGGAGTACAAAATCCTATGGCTTATCCTTCAC
GTGGTGTACCCTGTTACGCATTTTcagaaactgaaactgaaaatacaAAC
TGAAAGCCAAGGTTATCTAAAGGGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005823XLOC_005823Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010364-exon-sc0000104-1491911889:435234..436611TCONS_00010364-exon-sc0000104-1491911889:435234..436611Clytia hemisphaericaexon
TCONS_00010364-exon-sc0000104-1510915933:435234..436611TCONS_00010364-exon-sc0000104-1510915933:435234..436611Clytia hemisphaericaexon
TCONS_00010364-exon-sc0000104-1575043694:435234..436611TCONS_00010364-exon-sc0000104-1575043694:435234..436611Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:435234..436611 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.303488	0.207164	0.171812	0.302565	0.327416	0.194047	0.624291	0.511397	0.485913	0.221746	0.603531	0.485091	0.20184	0.188652	0.120631	0.184937	0.0705066	0.280219	0.45166	0.236315	0.330918	0.171749	0.139189	0.158179	0.684267	0.639773	0.166457	0.0888236	0.0673696	0.102958
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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