TCONS_00010421 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010421
Unique NameTCONS_00010421
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010421 ID=TCONS_00010421|Name=TCONS_00010421|organism=Clytia hemisphaerica|type=transcript|length=1558bp
TTTCGACATACTTTATTAAGAGTGATTAAGTTTTAGATTGTTTCCTATAA
AACGTCAGACGGAACAGATAGAGAAATCAATGATACAGTGACATTATATG
GTATGCGTTGTTCGCTACACACCTTCACAAGATGGAAATGCAAGGATTga
tttttctcttgatttactcGACACGTCTTGTTGGTGGTTATGATATTTTC
AGTCAGTTATATTACCCATCTAAAGAAAACACTTTCTTGGAGGAGGAAAT
CACCAACGACATCCCTCGTCTTGTCAGTCGATACAGCCGGTATGAAATGA
GGACCAGATTTACGGGAAATTATAATGGTTCTATGTACACATCACATGAA
ACGCTCGGTGGCTATGAACAGGAGACGGACAACGAGTTATCGTACGAGAC
AACTGTCGTCAGGTCGGGAAAACGAATCGTAACATTTGTCGGCGTCGAGA
AAAAGAAAGTTCAAAAGTCTTCAATGTTTAATCAATACCATAACTTTTAT
AAAACGAAACAAATTAAAATCCCACAGAAGAGAAAACAGAAAACGAAGAA
GCGTCGAGTGCGGAGAAACGTTTACGGGCGTGATGATCGAACATTCATTC
CAGTCAATAACAATTTCGGACTGAAGGAGCCCTATATATTCACCGTCCGT
ATCTCCACTGGATGTACCGGTATTTTGATCTCGCCACGTCACGTCTTAAC
GGCCGCGCATTGCGTACACGATCAAAAGGATTACGTGAAACAAACCAAAG
ACTTGAAAATTGGTTTACTAAAAGATAAGAGCACTTATGAATGGCTGGGC
gttaaaaacattaaactatCCAAAGGGTGGATTGAGGGCGGTCAACGTAA
CGGGCCATTTTACGATTACGCTTTACTGAAACTTTCACGTAAACACAGAC
GTCCGTACATACGTATCAGTATAAGTGAAGAGAAGCATCATGGATCGGGT
GAACGGATTTCGTTCTCGGGTTTTGATGACGACAAACCAACGGGCACCAT
GTGGTACCGATCTTGCACCGTGGTTGAAGACGATCGGACATTTCTGTACC
ACTATTGTGATGCTCAACCGGGGTCATCAGGATCAGGTGTTTACTCATGG
GTTTTCGACGAGGAAACAGGACGATGGGAACGAGAATTGGTCGGTGTCTT
CTCGGGAAACCGATGGCGAACTTACGACGAATTTTATATTCGAGTGAAAA
ACTTCAATGTCGCTGTCCGTCTGACCAGGTATAAATATGCACAAATCTGT
AAATGGCTTGGCTCAAAAATGGCTGCCAAAATATGTAAAGATAAAATTGA
TAGAAATTAAATGAGAGCTTAATAGTATTAACGTTCCTCGTTATTTATAA
TAGTTAGGTTTAGATTACCGTGTTGTTATTAAAGATTATTACCCATAATA
ATTAATATATGTAAGTAGAGCTTTTTTGGTATATCTTGATGCTGATTGCA
ATCAGACCAATCTCGCATCGCAATTATTATCTCATCTCACAGATTCTcgt
caaaatcttttttcatctcTATAAAGTTCTTTATCGGTTTGAGGCTCTTG
AACAGTCG
Run BLAST on NCBI

transcript from alignment at sc0000106:46088..50883-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010421 ID=TCONS_00010421|Name=TCONS_00010421|organism=Clytia hemisphaerica|type=transcript|length=4796bp|location=Sequence derived from alignment at sc0000106:46088..50883- (Clytia hemisphaerica)
TTTCGACATACTTTATTAAGAGTGATTAAGTTTTAGGTTAGTTATGGTCA
ATTAGATCTTATTGAGGTTTGATGTTGATTTGATTGATTTAGATATCCAT
CTATCTTTCACCGCGACCTTTGACTCTCTACATTTGGATTTACTTCAAGG
ATGTTCGCCGTAGTTACGCTCGTCTCTAAAGAATCCGTAAAACTTGCCAA
TCGCTCATCTGAGGGTTGTTTTTATGATTTAGCAAAATTGTTTTCAATTT
TCTTTTGAAATAATCACTTTTTTTGCTCTGAGTATTTGGTTCTTCTCAGA
GTGTTGCAGCAAAGGGAAATATGCATTGCTATTTTTTCATGTCTTCACGT
CACACAAACCTTGGCTTCGGTTTCGTTGATGGATTTTTAGTCGTCAAAAA
GTTGTTTTTGACCATCTATGGTTGGAGTAACCAAATCATGTGTTACACTG
CCTCCTCTATGTTTTTGATACACTGTTCAAGTAACCACACTTCAAAAATG
TTGCTTATCTTGTATCTGTATATTTCGTCATCATTTGTCTTTAAGTAGTT
GGTTTATGAGTCAGTCCAATTTCTTAATTTTTAAATCTGCCTTGGAACCT
TATCGAATTGACTCACAATACCTTACTTTGTCACTTTATATAGTATCTTT
TTGTTTATTATTAGATGGTTTTGTGCAAAAAAGTACTGATGGTTTTTATA
ATGTCTCATGAATAGATTTAATATGACCTCCAATTTGTCACATCTGACAA
CATTCTTTAAATATGTGAACGACACAAACTTGATGACAGTATTTTTGCTC
TCGCTGCCACAAATAACTTGACAGCAAATCTATTTCTTCTTGGTAAAACC
GAGTGATATTTTTTGATCCACTGATCTTGTCAAGTTTGAATTTCTCAGCT
TGACAACTAGTAATTTTGAGCTTATAACATATTTTTATGTAAATAAGTAT
CTACATCAGTTGGCAGTTGTATTTCAGCTTAGATATGTGGATTGATGTGT
TTGAATAATGTAAATGCAAACATTTGATTTGCTTGGTTGTATTCGAATTT
TCTTGGTGAAAAACCTGGATTCCCAGTGAAAAAATACAGTGAACAATTGT
TGGTGCGTTTATAATACAGGTTTATATAAAAAAATTTGCCATCCTACGTA
CTGAGTCATTTTGGTTTTCCGGATTGAAATAAGTATCTACATCAGTTGGC
AGTTGTTTTTCATACAATATTCATGCAGAATAAAAATTCTCTCTTTAAAA
GCTGTTTCTTATCAATATGTTATTCATTGAGCTGGCTCGCTCGTCCTCAG
TCCCCTCACTCTCTTGTCTTGCAGGTTTTGATATCTTTTTCTCCTCTTTT
TAAAACCAATGTAAGTAATTAAGGAAGATCATCTCTGATAGACACATTTT
TTGATACTAAACACAGTGTAGCTGTTCTATTACTCTCATTTTAAACACTG
CTCGACTATTGATATGACATTCAAGAAAATATGTTGTCTATTTGTGGAAT
ATGCTAAAACTTAAAAACAACTTTCTATTTTAATGTGGTTGGTTTTAGTT
ATAAGGATAATATTGCTTACCAAGAAGTCATTAGACGAAGGTCCAAAAAT
TAAAATAAAAGTATAAAGTTTTGTATTAGCAACGAGAACGCCAAAGATAG
ACGTCCTAAACTGGCTCTTTTTAATCAAATGTTAGACCGGGATATGCATG
GCCCTTCAATGTCTTGTTCCTTAGGATATAACGGTTGTAATGATATTGTG
TAATTGGTTCAAAGGAGTCTTTTTTTGTTCAAATTTCAATCAAAGGAGGT
TACACACTTTGTCGAAAATTCTCATCCTTTAATAATTCGAGCATATTTTT
GTAAGGATTCCGTCTCTCAAGTTGTGGTTAGCGACCAAGATGACGTCACA
TAATCTACCTTAAGAATTTGTAATCTCAGATGTGTGCGTCTGATTCGTGT
CTTTTGTTTCTGAATCAGTTTATTGGATTTGTCTTCTATGAAATACNTCT
CAGATGTGTGCGTCTTTTGTTTCTGAATCAGTTTATTGGATTTGTCTTCT
ATGAAATACTCGTGAAGATGCAGTGTCGAGTTCTACATAGCTCTGAAGAT
ATACACAAAAATCTGTTGCAGGCGTTCAGTAACTATGCCAATCATTAATA
AGGCTAGGTTTTCAACCTCAAATAGTTGGTAGTAGGTGAATTGCTTTCAT
ATTCAGTGACCTTTATGGAGTTTTTGAAAAAGTTTTGAATTGCAAGCATT
TATTAGAGGTGAGGTTTTGTACTGGAAGCTCTTGTCAACAGTAGACAGAA
TGAGATCACATCGTGTAGCATGAATATTGTAAGAGTACTGTTGGTGTTCT
TTGAACAGCATCCGATATTTGTTTGTCTATTTTTTGTACGGTTATCAATT
AATTAGTTTTATTTCCATCGCTTAGTTACACAGATGGATTTAAACTATCG
CCTTCGAATAATTTCCTGCCTTTTCAATTCTGTAAAAAAAAATCTGTTTC
TTGCAGACTTTTCTCGTGTTTTATGCGTTAGAATGCTTTGGGAGGGAGAT
CTGTAACAATTTCTTTGCGAGNTTTGCAGACTTTTCTCGTGTTTTATACG
TTAGAATGCTTTGGGAGGGAGATCTGTAACAATTTCTTTGCGAGTGACAT
TCTCTTTTTGTGTGTCATCCTGACTTGTTTAGCACGGCATGTCAACGCAC
TGTTATTGTATTCAACTTTTATTAGCGATGTGAATTGTGGTTTAGAGCAC
AACAAGCAACACTCATCATTTCTCATTATTCTTTTAACGTATCAGTTACG
GAAAGGTTTTTTTATTTTCTCTCATAGATTGTTTCCTATAAAACGTCAGA
CGGAACAGATAGAGAAATCAATGATACAGTGACATTATATGGTATGCGTT
GTTCGCTACACACCTTCACAAGATGGAAATGCAAGGATTGATTTTTCTCT
TGATTTACTCGACACGTCTTGTTGGTGGTTATGATATTTTCAGTCAGTTA
TATTACCCATCTAAAGAAAACACTTTCTTGGAGGAGGAAATCACCAACGA
CATCCCTCGTCTTGTCAGTCGATACAGCCGGTATGAAATGAGGACCAGAT
TTACGGGAAATTATAATGGTTCTATGTACACATCACATGAAACGCTCGGT
GGCTATGAACAGGAGACGGACAACGAGTTATCGTACGAGACAACTGTCGT
CAGGTCGGGAAAACGAATCGTAACATTTGTCGGCGTCGAGAAAAAGAAAG
TTCAAAAGTCTTCAATGTTTAATCAATACCATAACTTTTATAAAACGAAA
CAAATTAAAATCCCACAGAAGAGAAAACAGAAAACGAAGAAGCGTCGAGT
GCGGAGAAACGTTTACGGGCGTGATGATCGAACATTCATTCCAGTCAATA
ACAATTTCGGACTGAAGGAGCCCTATATATTCACCGTCCGTATCTCCACT
GGATGTACCGGTATTTTGATCTCGCCACGTCACGTCTTAACGGCCGCGCA
TTGCGTACACGATCAAAAGGATTACGTGAAACAAACCAAAGACTTGAAAA
TTGGTTTACTAAAAGATAAGAGCACTTATGAATGGCTGGGCGTTAAAAAC
ATTAAACTATCCAAAGGGTGGATTGAGGGCGGTCAACGTAACGGGCCATT
TTACGATTACGCTTTACTGAAACTTTCACGTAAACACAGACGTCCGTACA
TACGTATCAGTATAAGTGAAGAGAAGCATCATGGATCGGGTGAACGGATT
TCGTTCTCGGGTTTTGATGACGACAAACCAACGGGCACCATGTGGTACCG
GTGAGTGACTTTATTTATTTTTCATTCTCTTCTTATGGAATATCCTTTTT
TTTTATCAGATACTTTTGATAAAGCCTCACACTGTGTTTTTCGATTTGTA
TATTGCTCTTATTTTCCTAAGGTAAAGGCCGGTCCCCACTTGCGCGCGCT
GCGATCGCCTTTTTTCAAGCATAGCAATTGGTCAAAAGAAAATTGAAACA
ATTCCATAGGCACAATCTGACGTAACGGTTGAAAACAGTTGAAATGTATT
CTTTTTTTTTCGAGCGCGCGCTACAATTTTTTTGACGTAATCTTTTTTCC
AAGCAAAGAGGATTGAAACCAAAAGGTGCGATCGCAGTGCGCGTAAGTGG
AGACCGGCCTTAAAGTTGGATTGCCAATTATTTTGACAAAACAGCTAGAC
GATGATATAACGATAATAATGAAGTCATTTTTTCTTTATTTCTTCAGATC
TTGCACCGTGGTTGAAGACGATCGGACATTTCTGTACCACTATTGTGATG
CTCAACCGGGGTCATCAGGATCAGGTGTTTACTCATGGGTTTTCGACGAG
GAAACAGGACGATGGGAACGAGAATTGGTCGGTGTCTTCTCGGGAAACCG
ATGGCGAACTTACGACGAATTTTATATTCGAGTGAAAAACTTCAATGTCG
CTGTCCGTCTGACCAGGTATAAATATGCACAAATCTGTAAATGGCTTGGC
TCAAAAATGGCTGCCAAAATATGTAAAGATAAAATTGATAGAAATTAAAT
GAGAGCTTAATAGTATTAACGTTCCTCGTTATTTATAATAGTTAGGTTTA
GATTACCGTGTTGTTATTAAAGATTATTACCCATAATAATTAATATATGT
AAGTAGAGCTTTTTTGGTATATCTTGATGCTGATTGCAATCAGACCAATC
TCGCATCGCAATTATTATCTCATCTCACAGATTCTCGTCAAAATCTTTTT
TCATCTCTATAAAGTTCTTTATCGGTTTGAGGCTCTTGAACAGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005860XLOC_005860Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010421-exon-sc0000106-1575043694:50848..50883TCONS_00010421-exon-sc0000106-1575043694:50848..50883Clytia hemisphaericaexon
TCONS_00010421-exon-sc0000106-1575043694:47084..48056TCONS_00010421-exon-sc0000106-1575043694:47084..48056Clytia hemisphaericaexon
TCONS_00010421-exon-sc0000106-1575043694:46088..46636TCONS_00010421-exon-sc0000106-1575043694:46088..46636Clytia hemisphaericaexon
TCONS_00010421-exon-sc0000106-1510915933:50848..50883TCONS_00010421-exon-sc0000106-1510915933:50848..50883Clytia hemisphaericaexon
TCONS_00010421-exon-sc0000106-1510915933:47084..48056TCONS_00010421-exon-sc0000106-1510915933:47084..48056Clytia hemisphaericaexon
TCONS_00010421-exon-sc0000106-1510915933:46088..46636TCONS_00010421-exon-sc0000106-1510915933:46088..46636Clytia hemisphaericaexon
TCONS_00010421-exon-sc0000106-1491911889:50848..50883TCONS_00010421-exon-sc0000106-1491911889:50848..50883Clytia hemisphaericaexon
TCONS_00010421-exon-sc0000106-1491911889:47084..48056TCONS_00010421-exon-sc0000106-1491911889:47084..48056Clytia hemisphaericaexon
TCONS_00010421-exon-sc0000106-1491911889:46088..46636TCONS_00010421-exon-sc0000106-1491911889:46088..46636Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106supercontigsc0000106:46088..50883 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0477853	0	3.02171	1.19961	1.97461	4.11223	3.13756	2.53938	0.611099	0.394747	17.0837	12.0102	2.25138	2.09305	17.3934	21.5397	21.4532	21.3501	26.4774	22.3181	18.6203	29.8644	77.6952	45.3505	7.5245	17.0229	1.24374	0.710487
Blast
[Close]
BLAST of TCONS_00010421 vs. Swiss-Prot (Human)
Match: PRS23 (Serine protease 23 OS=Homo sapiens GN=PRSS23 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 2.594e-60
Identity = 106/250 (42.40%), Postives = 154/250 (61.60%), Query Frame = 3 
Query:  567 NVYGRDDRTFIPVNNNFGLKEPYIFTVRISTGCTGILISPRHVLTAAHCVHDQKDYVKQTKDLKIGLLKDK------------------STYEWLGVKNIKLSKGWIEGGQRN-GPFYDYALLKLSRKHRRPYIRISISEEKHHGSGERISFSGFDDDKPTGTMWYRSCTVVEDDRTFLYHYCDAQPGSSGSGVYSWVFDEETGRWERELVGVFSGNRWRTYDEFYIRVKNFNVAVRLTRYKYAQICKWL 1259
             +YG D R F     +F L  P+  +V++STGCTG L++ +HVLTAAHC+HD K YVK T+ L++G LK K                    ++W+ VK   + KGWI+G   + G  YDYALL+L + H+R +++I +S       G RI FSG+D+D+P G + YR C V ++    LY  CDAQPG+SGSGVY  ++  +  +WER+++G+FSG++W   +      ++FNVAVR+T  KYAQIC W+
Sbjct:  129 QIYGYDSR-FSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKTYVKGTQKLRVGFLKPKFKDGGRGANDSTSAMPEQMKFQWIRVKRTHVPKGWIKGNANDIGMDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRP-GNLVYRFCDVKDETYDLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNG---SPQDFNVAVRITPLKYAQICYWI 373
The following BLAST results are available for this feature:
BLAST of TCONS_00010421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRS232.594e-6042.40Serine protease 23 OS=Homo sapiens GN=PRSS23 PE=1 ... [more]
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