TCONS_00010523 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010523
Unique NameTCONS_00010523
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010523 ID=TCONS_00010523|Name=TCONS_00010523|organism=Clytia hemisphaerica|type=transcript|length=2304bp
ATAAATTGGGCACGAATCTTTCTGCAGAATCACAatcatatttttgattt
tttcatcatGATGTTGAAATTGGTATTGTGTGTAGCAGTTCTAGTTGCAG
CAACATaTGCTTGCAAGGATGGTCACAGCTCGTGCCCTCGTTGGACAAAG
TACTGTAGCTCCAACTCATACGTCAAAAAATACTGTCTGAAATCTTGCGG
TAAATGCAGCCAAACTGCTGCGCCACCAACCCAAGCTCCACCAACCAGCG
GTGGTAGCTCAAGCTATGGAGAGTNTGCGGTAAATGCAGCCAAACTGCTG
CGCCACCAACCCAAGCTCCACCAACCAGCGGTGGCAGCTCAAGCTATGGA
GAGTGTGGTGTCACCCCAGTCCCACAAAGTCGAATTGTCAACGGTGATGA
AGCTAAAGAAGGAGCTTGGCCATGGATTGTCTCTCTTCAAACTTCGGGTG
GATTTCATTTCTGTGGTGGCTCAATCTTGACACCAACTTGGattttGACT
GCAAGCCATTGCGTTGACAGCCGCAAGAACTCACCAACAAGCATGAGAGT
CATTGCTGGTGCACATAACATCAAATCTAGAGAAGGaactcaacaaaaaa
tgacaCCAAAACGAATTATCATGCATCAAAGCTATGGCGTTGGTGGTTTT
TTAAATGCTGACATTGCACTTATTGAGTTGTCATCACCTTTACGATTGAA
TGATCGTGTTGTCAGAGCTTGTGTTCCTCAACAAGGAGTCTACCCTAAAG
TTGGAACAAAATGTTATATCGCCGGCTGGGGAAGAATTTCATACAATCCA
AGAAGGTCACCTGAAAAACTTCAACAAGCAAAACTCCCAATTATGAACAA
CAAAGGTAAAGAACAAGTTATCGCTGGTCATGGTGTCCGAGGAAAAGCCA
ATGCTTGCCAAGGAGATTCTGGTGGTCCATTGATGTGTTTGAAATCTGAT
GGAAAATCATGGCAAGTCGAAGGTGCTGCAAGTTATGTCTACCGTGGATG
TTATGGTATTAGCGCTTACTCCCCACTCAATAAATATTTGAGCTGGGTTA
AACGATATGTTCCAAACTTGTaatttatataatatatacatTGAAGGTCA
TTAAAAGATTAATTtatgaatgaaaaatatatattttttgaatttgaatg
ttatTTGCTTATTATTTTCCAAGTTCCACCAGTAGCGTCTGGCTTAGCAA
CACCCTAAACTGCCATTTAACGCTGCctaagaaacaaaaattatagATAA
AATTATGGTTTGGTagaattcaattcaaaaaattcatttttatttaatac
AAATAGGTAATTTTCCACCCTAAATGATCATAAAATTTGATCAGGTTGTT
GTTAATATTGATACTTTTATTAAATACGATTGAAATTTGTAGTGAAAAAT
TAGGCTTTTAACAAGAATATTTGAATAATATTTTGCGTAGCTGTACAAAG
ttgtattcaatttcaattgCACTATAAAAGCGGAAACGCTATTAGGATTT
TATGAAtcattttttttcgtttaaaaTCACCACGAGGATGTTACGATTGG
TATTGGCATTTACGTTTCTTACCAGCGTAGCATGTCAATGTGGTGTATCC
AAGGTCTCACAAAGTCGAGTTGTGAATGGAGTTGACGCAAAAGAAGGAGC
TTGGCCATGGATTGTCTCATTGCAAACTTCCAGTGGATTTCATTTCTGCG
GTGGCTCAATCTTGACACCAAACTGGATTCTAACAGCCAGTCATTGTGTG
GCAAGTCGTAAGAACACACCGAGACAATTGAATGTAGTTGCTGGTGCACA
TAATATCAAGATCAAGGAAGCAAGCCAACAAAAAATTGCAGCCAAACGAA
TTATCATGCATCCTCATTATGATAATGACGGACACTTGCATGCTGACATT
GCGCTTATTGAGTTGTCATCACCTTTACGATTGAATAGTCGTGTTGTCAG
AGCTTGCGTTCCTCAACAAGGAATTCACCCTAAAGTTGATGCTGAATGTT
TTGTTGCAGGTTGGGGAAGAATTCAGTTCGATCCAAAAAAATCACCAGAA
AAGCTTCAACAAGCAAAATTACCCATCATGCACCGTCCTGACCGCGAACA
AGTTATGGCTGGTTATGGCATCAGCTCCAAAGGAAAAGCCAATGCTTGCC
AAGGAGATTCTGGTGGTCCATTGATGTGTTTGAAATCTGATGGAAAATCA
TGGCAAGTTGAAGGTGCTGCAAGCTGGGTATACAGAGGATGTCATTCTGT
TAGTGCGTTTTCGCCACTCAATAAATATTTGAGCTGGGTCAAACAGTATG
TTAG
Run BLAST on NCBI

transcript from alignment at sc0000107:356897..361563+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010523 ID=TCONS_00010523|Name=TCONS_00010523|organism=Clytia hemisphaerica|type=transcript|length=4667bp|location=Sequence derived from alignment at sc0000107:356897..361563+ (Clytia hemisphaerica)
ATAAATTGGGCACGAATCTTTCTGCAGAATCACAatcatatttttgattt
tttcatcatGATGTTGAAATTGGTATTGTGTGTAGCAGTTCTAGTTGCAG
CAACATGTAAGTATCTTAATACCTTCGAAATTCTAAAAGCTTTTTGCtat
taaattttaaactttaCTGAAAAGATTTCTAATAAATTTCTGTAACCACA
AATTctattgaataatttttttctaatttagaTGCTTGCAAGGATGGTCA
CAGCTCGTGCCCTCGTTGGACAAAGTACTGTAGCTCCAACTCATACGTCA
AAAAATACTGTCTGAAATCTTGCGGTAAATGCAGCCAAACTGCTGCGCCA
CCAACCCAAGCTCCACCAACCAGCGGTGGTAGCTCAAGCTATGGAGAGTN
TGCGGTAAATGCAGCCAAACTGCTGCGCCACCAACCCAAGCTCCACCAAC
CAGCGGTGGCAGCTCAAGCTATGGAGAGTGTGGTGTCACCCCAGTCCCAC
AAAGTCGAATTGTCAACGGTGATGAAGCTAAAGAAGGAGCTTGGCCATGG
ATTGTCTCTCTTCAAACTTCGGGTGGATTTCATTTCTGTGGTGGCTCAAT
CTTGACACCAACTTGGGTAAGATGATATATCTTTATTAAGTGTCGCATCC
TTAAATATCTTTAGAACTAAAGAAGTTTCCCAGTCCTTACGCCTTCTTTG
TctcaaagaaaattaatttaGCCTTTCAATGATGGTGTCATTTTATCCAA
AAACGCTAAaactaaaatataaatattttcaacttttgaagGGGGTTCTC
TTTTTGCTTTCAATCTTATCCTTTAGTATCCAAAGGGCTTTCGATGCGCA
AGCCAAAACATAGCCGGCGTCTGCGACGACAGGGACCGTCTAGTTAAGTG
CTATTTCAGTAATCTACCGAGATATAGCCAGAGAAAATTCTCTTAAACGA
AGATAAAGCAATCTTACATCGGTACGGACATGATTCTAAAGCCCATTCGT
TTTAAGTGTGCATTCTGTTTCACTATCCTGATTTTACTGGTTTTTATGCG
TGCAATAATCGTTCAGAATCGTTATGTAtaaacattattttttctttaac
agattttGACTGCAAGCCATTGCGTTGACAGCCGCAAGAACTCACCAACA
AGCATGAGAGTCATTGCTGGTGCACATAACATCAAATCTAGAGAAGGaac
tcaacaaaaaatgacaCCAAAACGAATTATCATGCATCAAAGCTATGGCG
TTGGTGGTTTTTTAAATGCTGACATTGCACTTATTGAGTTGTCATCACCT
TTACGATTGAATGATCGTGTTGTCAGAGCTTGTGTTCCTCAACAAGGAGT
CTACCCTAAAGTTGGAACAAAATGTTATATCGCCGGTAAGATTGGTTTTC
TTGGTTTTACGATTTGAGGTTTCGGAGAAGAAAGAAAACTTTCTGAATTT
AAGCCTTTAAATAGGTTTCAGTTTTCTCTGAACTGTCTaaagttcttgaa
aaatttcaaggttAGGAAGAATATGAAGCTATAACTATCCAAAAATTGTC
CCTGAGTAAATGAACTTCCTCATTTGAATCTGATCTCAATCAATCAGTTA
GCTGGCTGTTTCCGTAACTGAGAAGCAACATTAGCTTAACCTTTATGTCC
AGGGGGTACCCCTTGTACCACCCTCACTTGCGGTGAAGCCAACACTACGC
AACCTGTTTGCCAAAGACCCGTGGTTGAGCCAATAGTTGCAGAAGTTGCA
GAGTAATGAGTGGTACTCAGTGGGAATCTGTTGTTAATATAAAATAACCA
TCTGAATCTTGGATatgttattttatttcattcagGCTGGGGAAGAATTT
CATACAATCCAAGAAGGTCACCTGAAAAACTTCAACAAGCAAAACTCCCA
ATTATGAACAACAAAGGTAAAGAACAAGTTATCGCTGGTCATGGTGTCCG
AGGAAAAGCCAATGCTTGCCAAGGAGATTCTGGTGGTCCATTGATGTGTT
TGAAATCTGATGGAAAATCATGGCAAGTCGAAGGTGCTGCAAGTTATGTC
TACCGTGGATGTTATGGTATTAGCGCTTACTCCCCACTCAATAAATATTT
GAGCTGGGTTAAACGATATGTTCCAAACTTGTaatttatataatatatac
atTGAAGGTCATTAAAAGATTAATTtatgaatgaaaaatatatatttttt
gaatttgaatgttatTTGCTTATTATTTTCCAAGTTCCACCAGTAGCGTC
TGGCTTAGCAACACCCTAAACTGCCATTTAACGCTGCctaagaaacaaaa
attatagATAAAATTATGGTTTGGTagaattcaattcaaaaaattcattt
ttatttaatacAAATAGGTAATTTTCCACCCTAAATGATCATAAAATTTG
ATCAGGTTGTTGTTAATATTGATACTTTTATTAAATACGATTGAAATTTG
TAGTGAAAAATTAGGCTTTTAACAAGAATATTTGAATAATATTTTGCGTA
GCTGTACAAAGttgtattcaatttcaattgCACTATAAAAGCGGAAACGC
TATTAGGATTTTATGAAtcattttttttcgtttaaaaTCACCACGAGGAT
GTTACGATTGGTATTGGCATTTACGTTTCTTACCAGCGTAGCATGTAAGT
ATCACTCATTTAAAATTTTCCTCGACATTTGCCAATCTTTATGCCGTACT
TTACACCAGCTTCTTTGTAATAGCTGCAAtcatggtcataatatttgaga
aaaaagggaaatttctaACACAAACGATTTAGAAGCGCTTTAAATTatgt
tggaagggtagagttttaactctgagttttaatgctagacttaagaaaag
ttcaagaatggtccaatagggctcagaatttATCAATTAGATCATGTTTG
CAagtgacggttccgtttcgctccgaaacagaatgaagccattctattgg
ttagaagtgacgtaacacttgaatttaaccaatagaatggcttcatttcg
ttgcggagcgaaacggaaccgtcacgtgcgagTCTTAGCCCAGAAGCGAC
TTTCTCGctcgaactccaaatttcgaaaagcgAGGAAATAAGTTacattc
tcaatagattttgaccatgattgtggTGTTTGTTTTTCTTAACCAAGTGT
AAACCCATTGGTCACTCTACATATGGTCTAGATTCTATGGTACTAGCAAT
TAGATAGATTCActtgttttagtttttttaatttttgtttttcaaacaat
ttcttAGTTTTATGTACAATTTACCCATCAACTGACAATAGGTCAATGTG
GTGTATCCAAGGTCTCACAAAGTCGAGTTGTGAATGGAGTTGACGCAAAA
GAAGGAGCTTGGCCATGGATTGTCTCATTGCAAACTTCCAGTGGATTTCA
TTTCTGCGGTGGCTCAATCTTGACACCAAACTGGGTGAGCTAAGTTTTCC
TTCCTATTTTGATCTTTTGAATAACAATAGGTACATTTATAGGTAAAGGG
CCTGATATATTCTAGAGAAAGTTATAAAAAAGTCGATGTTAGACCAAAGT
AAAATCTAACTTcgaaaaacctaaaaacaattcaattttcTGCAATAAAT
ATCAATGAaacaaaaagctaagaacactCCCATATAAGCAACCTTTAAAA
TTAAAGCCACAGATGTATCTATTCTTTAGATTCTAACAGCCAGTCATTGT
GTGGCAAGTCGTAAGAACACACCGAGACAATTGAATGTAGTTGCTGGTGC
ACATAATATCAAGATCAAGGAAGCAAGCCAACAAAAAATTGCAGCCAAAC
GAATTATCATGCATCCTCATTATGATAATGACGGACACTTGCATGCTGAC
ATTGCGCTTATTGAGTTGTCATCACCTTTACGATTGAATAGTCGTGTTGT
CAGAGCTTGCGTTCCTCAACAAGGAATTCACCCTAAAGTTGATGCTGAAT
GTTTTGTTGCAGGTATCGCTATATAATTAAAGTTATTTATAAGTATATTT
TGCTTTTACTTCATTGACAGCGTTGCATGCTTAAATATACATGTTCCAGT
GGCCGTTGCATGAAGGTAGATCATCCAGCTACGGAGCGCTAGGGTCATAC
TAAAGactcccaaaatggtacttgatgcctctctgcttgatgatCAGTAA
CTACAATGACGGATCAAGAGTACGGAAGAAATCCCGGGAGGgaagtggcg
ccctccccttcCTTTGGATTGAAAAGGAAGCCTTCCGTTCGGCCTTCTAC
TACGTTTGAAAATTTAACTTGCACTACATAAAGAGTACAGTAGATTGAAG
TCGTAGAAATGGCTGAAATCGcatttttctattcattttctctatttttc
tcttcttttttttcgactTGAGGTTGGGGAAGAATTCAGTTCGATCCAAA
AAAATCACCAGAAAAGCTTCAACAAGCAAAATTACCCATCATGCACCGTC
CTGACCGCGAACAAGTTATGGCTGGTTATGGCATCAGCTCCAAAGGAAAA
GCCAATGCTTGCCAAGGAGATTCTGGTGGTCCATTGATGTGTTTGAAATC
TGATGGAAAATCATGGCAAGTTGAAGGTGCTGCAAGCTGGGTATACAGAG
GATGTCATTCTGTTAGTGCGTTTTCGCCACTCAATAAATATTTGAGCTGG
GTCAAACAGTATGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005904XLOC_005904Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010523-exon-sc0000107-1491911889:356897..357002TCONS_00010523-exon-sc0000107-1491911889:356897..357002Clytia hemisphaericaexon
TCONS_00010523-exon-sc0000107-1510915933:356897..357002TCONS_00010523-exon-sc0000107-1510915933:356897..357002Clytia hemisphaericaexon
TCONS_00010523-exon-sc0000107-1575043694:356897..357002TCONS_00010523-exon-sc0000107-1575043694:356897..357002Clytia hemisphaericaexon
TCONS_00010523-exon-sc0000107-1491911889:357128..357512TCONS_00010523-exon-sc0000107-1491911889:357128..357512Clytia hemisphaericaexon
TCONS_00010523-exon-sc0000107-1510915933:357128..357512TCONS_00010523-exon-sc0000107-1510915933:357128..357512Clytia hemisphaericaexon
TCONS_00010523-exon-sc0000107-1575043694:357128..357512TCONS_00010523-exon-sc0000107-1575043694:357128..357512Clytia hemisphaericaexon
TCONS_00010523-exon-sc0000107-1491911889:357999..358281TCONS_00010523-exon-sc0000107-1491911889:357999..358281Clytia hemisphaericaexon
TCONS_00010523-exon-sc0000107-1510915933:357999..358281TCONS_00010523-exon-sc0000107-1510915933:357999..358281Clytia hemisphaericaexon
TCONS_00010523-exon-sc0000107-1575043694:357999..358281TCONS_00010523-exon-sc0000107-1575043694:357999..358281Clytia hemisphaericaexon
TCONS_00010523-exon-sc0000107-1491911889:358732..359540TCONS_00010523-exon-sc0000107-1491911889:358732..359540Clytia hemisphaericaexon
TCONS_00010523-exon-sc0000107-1510915933:358732..359540TCONS_00010523-exon-sc0000107-1510915933:358732..359540Clytia hemisphaericaexon
TCONS_00010523-exon-sc0000107-1575043694:358732..359540TCONS_00010523-exon-sc0000107-1575043694:358732..359540Clytia hemisphaericaexon
TCONS_00010523-exon-sc0000107-1491911889:360188..360330TCONS_00010523-exon-sc0000107-1491911889:360188..360330Clytia hemisphaericaexon
TCONS_00010523-exon-sc0000107-1510915933:360188..360330TCONS_00010523-exon-sc0000107-1510915933:360188..360330Clytia hemisphaericaexon
TCONS_00010523-exon-sc0000107-1575043694:360188..360330TCONS_00010523-exon-sc0000107-1575043694:360188..360330Clytia hemisphaericaexon
TCONS_00010523-exon-sc0000107-1491911889:360576..360858TCONS_00010523-exon-sc0000107-1491911889:360576..360858Clytia hemisphaericaexon
TCONS_00010523-exon-sc0000107-1510915933:360576..360858TCONS_00010523-exon-sc0000107-1510915933:360576..360858Clytia hemisphaericaexon
TCONS_00010523-exon-sc0000107-1575043694:360576..360858TCONS_00010523-exon-sc0000107-1575043694:360576..360858Clytia hemisphaericaexon
TCONS_00010523-exon-sc0000107-1491911889:361269..361563TCONS_00010523-exon-sc0000107-1491911889:361269..361563Clytia hemisphaericaexon
TCONS_00010523-exon-sc0000107-1510915933:361269..361563TCONS_00010523-exon-sc0000107-1510915933:361269..361563Clytia hemisphaericaexon
TCONS_00010523-exon-sc0000107-1575043694:361269..361563TCONS_00010523-exon-sc0000107-1575043694:361269..361563Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000107supercontigsc0000107:356897..361563 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.532188	0	0.153393	0.0589522	0.525253	2.26853e-07	0.391895	0.448381	0.194335	0.314781	0.291667	0.118145	142.129	137.789	6.21591	30.1159	92.5698	84.7947	375.591	356.03	294.452	336.287	343.733	427.687	421.193	487.637	0.0232205	0.0991263	0.216585	0.260787
Blast
[Close]
BLAST of TCONS_00010523 vs. Swiss-Prot (Human)
Match: CTRB2 (Chymotrypsinogen B2 OS=Homo sapiens GN=CTRB2 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 2.462e-41
Identity = 87/238 (36.55%), Postives = 133/238 (55.88%), Query Frame = 3 
Query:  378 SRIVNGDEAKEGAWPWIVSLQTSGGFHFCGGSILTPTWILTASHCVDSRKNSPTSMRVIAGAHNIKSREGTQQKMTPKRIIMHQSYGVGGFLNADIALIELSSPLRLNDRVVRACVPQQGVYPKVGTKCYIAGWGRISYNPRRSPEKLQQAKLPIMNN--------KGKEQVIAGHGVRGKANACQGDSGGPLMCLKSDGKSWQVEGAASYVYRGCYGIS--AYSPLNKYLSWVKRYV 1061
            SRIVNG++A  G+WPW VSLQ   GFHFCGGS+++  W++TA+HC        TS  V+AG  +  S E   Q +   ++  +  + +   +N DI L++L++P R +  V   C+P        GT C   GWG+  YN  ++P+KLQQA LP+++N        +    V+   G  G  ++C GDSGGPL+C K DG +W + G  S+  R C   +   Y+ + K + WV++ +
Sbjct:   32 SRIVNGEDAVPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHC-----GVRTSDVVVAGEFDQGSDEENIQVLKIAKVFKNPKFSILT-VNNDITLLKLATPARFSQTVSAVCLPSADDDFPAGTLCATTGWGKTKYNANKTPDKLQQAALPLLSNAECKKSWGRRITDVMICAGASG-VSSCMGDSGGPLVCQK-DG-AWTLVGIVSWGSRTCSTTTPAVYARVAKLIPWVQKIL 260

HSP 2 Score: 147.902 bits (372), Expect = 2.413e-39
Identity = 85/253 (33.60%), Postives = 138/253 (54.55%), Query Frame = 2 
Query: 1589 CGVSKV-----SQSRVVNGVDAKEGAWPWIVSLQTSSGFHFCGGSILTPNWILTASHCVASRKNTPRQLNVVAGAHNIKIKEASQQKIAAKRIIMHPHYDNDGHLHADIALIELSSPLRLNSRVVRACVPQQGIHPKVDAECFVAGWGRIQFDPKKSPEKLQQAKLPIMHRPDREQ--------VMAGYGISSKGKANACQGDSGGPLMCLKSDGKSWQVEGAASWVYRGCHSVS--AFSPLNKYLSWVKQYV 2302
            CGV  +       SR+VNG DA  G+WPW VSLQ  +GFHFCGGS+++ +W++TA+HC     +      VVAG  +    E + Q +   ++  +P + +   ++ DI L++L++P R +  V   C+P           C   GWG+ +++  K+P+KLQQA LP++   + ++        VM   G S     ++C GDSGGPL+C K DG +W + G  SW  R C + +   ++ + K + WV++ +
Sbjct:   19 CGVPAIHPVLSGLSRIVNGEDAVPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHCGVRTSDV-----VVAGEFDQGSDEENIQVLKIAKVFKNPKF-SILTVNNDITLLKLATPARFSQTVSAVCLPSADDDFPAGTLCATTGWGKTKYNANKTPDKLQQAALPLLSNAECKKSWGRRITDVMICAGASG---VSSCMGDSGGPLVCQK-DG-AWTLVGIVSWGSRTCSTTTPAVYARVAKLIPWVQKIL 260
The following BLAST results are available for this feature:
BLAST of TCONS_00010523 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRB22.462e-4136.55Chymotrypsinogen B2 OS=Homo sapiens GN=CTRB2 PE=2 ... [more]
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