TCONS_00010524 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010524
Unique NameTCONS_00010524
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010524 ID=TCONS_00010524|Name=TCONS_00010524|organism=Clytia hemisphaerica|type=transcript|length=2373bp
ATAAATTGGGCACGAATCTTTCTGCAGAATCACAatcatatttttgattt
tttcatcatGATGTTGAAATTGGTATTGTGTGTAGCAGTTCTAGTTGCAG
CAACATaTGCTTGCAAGGATGGTCACAGCTCGTGCCCTCGTTGGACAAAG
TACTGTAGCTCCAACTCATACGTCAAAAAATACTGTCTGAAATCTTGCGG
TAAATGCAGCCAAACTGCTGCGCCACCAACCCAAGCTCCACCAACCAGCG
GTGGTAGCTCAAGCTATGGAGAGTNTGCGGTAAATGCAGCCAAACTGCTG
CGCCACCAACCCAAGCTCCACCAACCAGCGGTGGCAGCTCAAGCTATGGA
GAGTGTGGTGTCACCCCAGTCCCACAAAGTCGAATTGTCAACGGTGATGA
AGCTAAAGAAGGAGCTTGGCCATGGATTGTCTCTCTTCAAACTTCGGGTG
GATTTCATTTCTGTGGTGGCTCAATCTTGACACCAACTTGGattttGACT
GCAAGCCATTGCGTTGACAGCCGCAAGAACTCACCAACAAGCATGAGAGT
CATTGCTGGTGCACATAACATCAAATCTAGAGAAGGaactcaacaaaaaa
tgacaCCAAAACGAATTATCATGCATCAAAGCTATGGCGTTGGTGGTTTT
TTAAATGCTGACATTGCACTTATTGAGTTGTCATCACCTTTACGATTGAA
TGATCGTGTTGTCAGAGCTTGTGTTCCTCAACAAGGAGTCTACCCTAAAG
TTGGAACAAAATGTTATATCGCCGGCTGGGGAAGAATTTCATACAATCCA
AGAAGGTCACCTGAAAAACTTCAACAAGCAAAACTCCCAATTATGAACAA
CAAAGGTAAAGAACAAGTTATCGCTGGTCATGGTGTCCGAGGAAAAGCCA
ATGCTTGCCAAGGAGATTCTGGTGGTCCATTGATGTGTTTGAAATCTGAT
GGAAAATCATGGCAAGTCGAAGGTGCTGCAAGTTATGTCTACCGTGGATG
TTATGGTATTAGCGCTTACTCCCCACTCAATAAATATTTGAGCTGGGTTA
AACGATATGTTCCAAACTTGTaatttatataatatatacatTGAAGGTCA
TTAAAAGATTAATTtatgaatgaaaaatatatattttttgaatttgaatg
ttatTTGCTTATTATTTTCCAAGTTCCACCAGTAGCGTCTGGCTTAGCAA
CACCCTAAACTGCCATTTAACGCTGCctaagaaacaaaaattatagATAA
AATTATGGTTTGGTagaattcaattcaaaaaattcatttttatttaatac
AAATAGGTAATTTTCCACCCTAAATGATCATAAAATTTGATCAGGTTGTT
GTTAATATTGATACTTTTATTAAATACGATTGAAATTTGTAGTGAAAAAT
TAGGCTTTTAACAAGAATATTTGAATAATATTTTGCGTAGCTGTACAAAG
ttgtattcaatttcaattgCACTATAAAAGCGGAAACGCTATTAGGATTT
TATGAAtcattttttttcgtttaaaaTCACCACGAGGATGTTACGATTGG
TATTGGCATTTACGTTTCTTACCAGCGTAGCATGTCAATGTGGTGTATCC
AAGGTCTCACAAAGTCGAGTTGTGAATGGAGTTGACGCAAAAGAAGGAGC
TTGGCCATGGATTGTCTCATTGCAAACTTCCAGTGGATTTCATTTCTGCG
GTGGCTCAATCTTGACACCAAACTGGATTCTAACAGCCAGTCATTGTGTG
GCAAGTCGTAAGAACACACCGAGACAATTGAATGTAGTTGCTGGTGCACA
TAATATCAAGATCAAGGAAGCAAGCCAACAAAAAATTGCAGCCAAACGAA
TTATCATGCATCCTCATTATGATAATGACGGACACTTGCATGCTGACATT
GCGCTTATTGAGTTGTCATCACCTTTACGATTGAATAGTCGTGTTGTCAG
AGCTTGCGTTCCTCAACAAGGAATTCACCCTAAAGTTGATGCTGAATGTT
TTGTTGCAGGTTGGGGAAGAATTCAGTTCGATCCAAAAAAATCACCAGAA
AAGCTTCAACAAGCAAAATTACCCATCATGCACCGTCCTGACCGCGAACA
AGTTATGGCTGGTTATGGCATCAGCTCCAAAGGAAAAGCCAATGCTTGCC
AAGGAGATTCTGGTGGTCCATTGATGTGTTTGAAATCTGATGGAAAATCA
TGGCAAGTTGAAGGTGCTGCAAGCTGGGTATACAGAGGATGTCATTCTGT
TAGTGCGTTTTCGCCACTCAATAAATATTTGAGCTGGGTCAAACAGTATG
TTAGTGATTTGTAAATTctgtttatttatttggatttaaACAAAATACAA
ATCAACTTCatgatgttcatgac
Run BLAST on NCBI

protein sequence of TCONS_00010524-protein

>TCONS_00010524-protein ID=TCONS_00010524-protein|Name=TCONS_00010524-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MNHFFSFKITTRMLRLVLAFTFLTSVACQCGVSKVSQSRVVNGVDAKEGA
WPWIVSLQTSSGFHFCGGSILTPNWILTASHCVASRKNTPRQLNVVAGAH
NIKIKEASQQKIAAKRIIMHPHYDNDGHLHADIALIELSSPLRLNSRVVR
ACVPQQGIHPKVDAECFVAGWGRIQFDPKKSPEKLQQAKLPIMHRPDREQ
VMAGYGISSKGKANACQGDSGGPLMCLKSDGKSWQVEGAASWVYRGCHSV
SAFSPLNKYLSWVKQYVSDL
Run BLAST on NCBI

transcript from alignment at sc0000107:356897..362306+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010524 ID=TCONS_00010524|Name=TCONS_00010524|organism=Clytia hemisphaerica|type=transcript|length=5410bp|location=Sequence derived from alignment at sc0000107:356897..362306+ (Clytia hemisphaerica)
ATAAATTGGGCACGAATCTTTCTGCAGAATCACAatcatatttttgattt
tttcatcatGATGTTGAAATTGGTATTGTGTGTAGCAGTTCTAGTTGCAG
CAACATGTAAGTATCTTAATACCTTCGAAATTCTAAAAGCTTTTTGCtat
taaattttaaactttaCTGAAAAGATTTCTAATAAATTTCTGTAACCACA
AATTctattgaataatttttttctaatttagaTGCTTGCAAGGATGGTCA
CAGCTCGTGCCCTCGTTGGACAAAGTACTGTAGCTCCAACTCATACGTCA
AAAAATACTGTCTGAAATCTTGCGGTAAATGCAGCCAAACTGCTGCGCCA
CCAACCCAAGCTCCACCAACCAGCGGTGGTAGCTCAAGCTATGGAGAGTN
TGCGGTAAATGCAGCCAAACTGCTGCGCCACCAACCCAAGCTCCACCAAC
CAGCGGTGGCAGCTCAAGCTATGGAGAGTGTGGTGTCACCCCAGTCCCAC
AAAGTCGAATTGTCAACGGTGATGAAGCTAAAGAAGGAGCTTGGCCATGG
ATTGTCTCTCTTCAAACTTCGGGTGGATTTCATTTCTGTGGTGGCTCAAT
CTTGACACCAACTTGGGTAAGATGATATATCTTTATTAAGTGTCGCATCC
TTAAATATCTTTAGAACTAAAGAAGTTTCCCAGTCCTTACGCCTTCTTTG
TctcaaagaaaattaatttaGCCTTTCAATGATGGTGTCATTTTATCCAA
AAACGCTAAaactaaaatataaatattttcaacttttgaagGGGGTTCTC
TTTTTGCTTTCAATCTTATCCTTTAGTATCCAAAGGGCTTTCGATGCGCA
AGCCAAAACATAGCCGGCGTCTGCGACGACAGGGACCGTCTAGTTAAGTG
CTATTTCAGTAATCTACCGAGATATAGCCAGAGAAAATTCTCTTAAACGA
AGATAAAGCAATCTTACATCGGTACGGACATGATTCTAAAGCCCATTCGT
TTTAAGTGTGCATTCTGTTTCACTATCCTGATTTTACTGGTTTTTATGCG
TGCAATAATCGTTCAGAATCGTTATGTAtaaacattattttttctttaac
agattttGACTGCAAGCCATTGCGTTGACAGCCGCAAGAACTCACCAACA
AGCATGAGAGTCATTGCTGGTGCACATAACATCAAATCTAGAGAAGGaac
tcaacaaaaaatgacaCCAAAACGAATTATCATGCATCAAAGCTATGGCG
TTGGTGGTTTTTTAAATGCTGACATTGCACTTATTGAGTTGTCATCACCT
TTACGATTGAATGATCGTGTTGTCAGAGCTTGTGTTCCTCAACAAGGAGT
CTACCCTAAAGTTGGAACAAAATGTTATATCGCCGGTAAGATTGGTTTTC
TTGGTTTTACGATTTGAGGTTTCGGAGAAGAAAGAAAACTTTCTGAATTT
AAGCCTTTAAATAGGTTTCAGTTTTCTCTGAACTGTCTaaagttcttgaa
aaatttcaaggttAGGAAGAATATGAAGCTATAACTATCCAAAAATTGTC
CCTGAGTAAATGAACTTCCTCATTTGAATCTGATCTCAATCAATCAGTTA
GCTGGCTGTTTCCGTAACTGAGAAGCAACATTAGCTTAACCTTTATGTCC
AGGGGGTACCCCTTGTACCACCCTCACTTGCGGTGAAGCCAACACTACGC
AACCTGTTTGCCAAAGACCCGTGGTTGAGCCAATAGTTGCAGAAGTTGCA
GAGTAATGAGTGGTACTCAGTGGGAATCTGTTGTTAATATAAAATAACCA
TCTGAATCTTGGATatgttattttatttcattcagGCTGGGGAAGAATTT
CATACAATCCAAGAAGGTCACCTGAAAAACTTCAACAAGCAAAACTCCCA
ATTATGAACAACAAAGGTAAAGAACAAGTTATCGCTGGTCATGGTGTCCG
AGGAAAAGCCAATGCTTGCCAAGGAGATTCTGGTGGTCCATTGATGTGTT
TGAAATCTGATGGAAAATCATGGCAAGTCGAAGGTGCTGCAAGTTATGTC
TACCGTGGATGTTATGGTATTAGCGCTTACTCCCCACTCAATAAATATTT
GAGCTGGGTTAAACGATATGTTCCAAACTTGTaatttatataatatatac
atTGAAGGTCATTAAAAGATTAATTtatgaatgaaaaatatatatttttt
gaatttgaatgttatTTGCTTATTATTTTCCAAGTTCCACCAGTAGCGTC
TGGCTTAGCAACACCCTAAACTGCCATTTAACGCTGCctaagaaacaaaa
attatagATAAAATTATGGTTTGGTagaattcaattcaaaaaattcattt
ttatttaatacAAATAGGTAATTTTCCACCCTAAATGATCATAAAATTTG
ATCAGGTTGTTGTTAATATTGATACTTTTATTAAATACGATTGAAATTTG
TAGTGAAAAATTAGGCTTTTAACAAGAATATTTGAATAATATTTTGCGTA
GCTGTACAAAGttgtattcaatttcaattgCACTATAAAAGCGGAAACGC
TATTAGGATTTTATGAAtcattttttttcgtttaaaaTCACCACGAGGAT
GTTACGATTGGTATTGGCATTTACGTTTCTTACCAGCGTAGCATGTAAGT
ATCACTCATTTAAAATTTTCCTCGACATTTGCCAATCTTTATGCCGTACT
TTACACCAGCTTCTTTGTAATAGCTGCAAtcatggtcataatatttgaga
aaaaagggaaatttctaACACAAACGATTTAGAAGCGCTTTAAATTatgt
tggaagggtagagttttaactctgagttttaatgctagacttaagaaaag
ttcaagaatggtccaatagggctcagaatttATCAATTAGATCATGTTTG
CAagtgacggttccgtttcgctccgaaacagaatgaagccattctattgg
ttagaagtgacgtaacacttgaatttaaccaatagaatggcttcatttcg
ttgcggagcgaaacggaaccgtcacgtgcgagTCTTAGCCCAGAAGCGAC
TTTCTCGctcgaactccaaatttcgaaaagcgAGGAAATAAGTTacattc
tcaatagattttgaccatgattgtggTGTTTGTTTTTCTTAACCAAGTGT
AAACCCATTGGTCACTCTACATATGGTCTAGATTCTATGGTACTAGCAAT
TAGATAGATTCActtgttttagtttttttaatttttgtttttcaaacaat
ttcttAGTTTTATGTACAATTTACCCATCAACTGACAATAGGTCAATGTG
GTGTATCCAAGGTCTCACAAAGTCGAGTTGTGAATGGAGTTGACGCAAAA
GAAGGAGCTTGGCCATGGATTGTCTCATTGCAAACTTCCAGTGGATTTCA
TTTCTGCGGTGGCTCAATCTTGACACCAAACTGGGTGAGCTAAGTTTTCC
TTCCTATTTTGATCTTTTGAATAACAATAGGTACATTTATAGGTAAAGGG
CCTGATATATTCTAGAGAAAGTTATAAAAAAGTCGATGTTAGACCAAAGT
AAAATCTAACTTcgaaaaacctaaaaacaattcaattttcTGCAATAAAT
ATCAATGAaacaaaaagctaagaacactCCCATATAAGCAACCTTTAAAA
TTAAAGCCACAGATGTATCTATTCTTTAGATTCTAACAGCCAGTCATTGT
GTGGCAAGTCGTAAGAACACACCGAGACAATTGAATGTAGTTGCTGGTGC
ACATAATATCAAGATCAAGGAAGCAAGCCAACAAAAAATTGCAGCCAAAC
GAATTATCATGCATCCTCATTATGATAATGACGGACACTTGCATGCTGAC
ATTGCGCTTATTGAGTTGTCATCACCTTTACGATTGAATAGTCGTGTTGT
CAGAGCTTGCGTTCCTCAACAAGGAATTCACCCTAAAGTTGATGCTGAAT
GTTTTGTTGCAGGTATCGCTATATAATTAAAGTTATTTATAAGTATATTT
TGCTTTTACTTCATTGACAGCGTTGCATGCTTAAATATACATGTTCCAGT
GGCCGTTGCATGAAGGTAGATCATCCAGCTACGGAGCGCTAGGGTCATAC
TAAAGactcccaaaatggtacttgatgcctctctgcttgatgatCAGTAA
CTACAATGACGGATCAAGAGTACGGAAGAAATCCCGGGAGGgaagtggcg
ccctccccttcCTTTGGATTGAAAAGGAAGCCTTCCGTTCGGCCTTCTAC
TACGTTTGAAAATTTAACTTGCACTACATAAAGAGTACAGTAGATTGAAG
TCGTAGAAATGGCTGAAATCGcatttttctattcattttctctatttttc
tcttcttttttttcgactTGAGGTTGGGGAAGAATTCAGTTCGATCCAAA
AAAATCACCAGAAAAGCTTCAACAAGCAAAATTACCCATCATGCACCGTC
CTGACCGCGAACAAGTTATGGCTGGTTATGGCATCAGCTCCAAAGGAAAA
GCCAATGCTTGCCAAGGAGATTCTGGTGGTCCATTGATGTGTTTGAAATC
TGATGGAAAATCATGGCAAGTTGAAGGTGCTGCAAGCTGGGTATACAGAG
GATGTCATTCTGTTAGTGCGTTTTCGCCACTCAATAAATATTTGAGCTGG
GTCAAACAGTATGTTAGTGATTTGTAAATTctgtttatttatttggattt
aaACAAAATACAAATCAACTTCatgatgttcatgacgtaatgttttttac
GAAAGCACCCAAAATAGTCCGGGCGCTAACCACTATTGgcaaaattagtg
gcaaacacTCGGTTTTCAATTGTTTATCNGACGGATCAAGAGTACGGAAG
AAATCCCGGGAGGgaagtggcgccctccccttcCTTTGGATTGAAAAGGA
AGCCTTCCGTTCGGCCTTCTATACTACGTTTGAAAATTTAACTTGCACTA
CATAAAGAGTACAGTAGATTGAAGTCGTAGAAATGGCTGAAATCGCATTT
TTCTATTCATCTTCtctatttttctcttcttttttttcgactTGAGGTTG
GGGAAGAATTCAGTTCGATCCAAAAAAATCACCAGAAAAGCTTCAACAAG
CAAAATTACCCATCATGCACCGTCCTGACCGCGAACAAGTTATGGCTGGT
TATGGCATCAGCTCCAAAGGAAAAGCCAATGCTTGCCAAGGAGATTCTGG
TGGTCCATTGATGTGTTTGAAATCTGATGGAAAATCATGGCAAGTTGAAG
GTGCTGCAAGCTGGGTATACAGAGGATGTCATTCTGTTAGTGCGTTTTCG
CCACTCAATAAATATTTGAGCTGGGTCAAACAGTATGTTAGTGATTTGTA
AATTctgtttatttatttggatttaaACAAAATACAAATCAACTTCatga
tgttcatgac

Coding sequence (CDS) from alignment at sc0000107:356897..362306+

>TCONS_00010524 ID=TCONS_00010524|Name=TCONS_00010524|organism=Clytia hemisphaerica|type=CDS|length=813bp|location=Sequence derived from alignment at sc0000107:356897..362306+ (Clytia hemisphaerica)
ATGAAtcattttttttcgtttaaaaTCACCACGAGGATGTTACGATTGGT
ATTGGCATTTACGTTTCTTACCAGCGTAGCATGTCAATGTGGTGTATCCA
AGGTCTCACAAAGTCGAGTTGTGAATGGAGTTGACGCAAAAGAAGGAGCT
TGGCCATGGATTGTCTCATTGCAAACTTCCAGTGGATTTCATTTCTGCGG
TGGCTCAATCTTGACACCAAACTGGATTCTAACAGCCAGTCATTGTGTGG
CAAGTCGTAAGAACACACCGAGACAATTGAATGTAGTTGCTGGTGCACAT
AATATCAAGATCAAGGAAGCAAGCCAACAAAAAATTGCAGCCAAACGAAT
TATCATGCATCCTCATTATGATAATGACGGACACTTGCATGCTGACATTG
CGCTTATTGAGTTGTCATCACCTTTACGATTGAATAGTCGTGTTGTCAGA
GCTTGCGTTCCTCAACAAGGAATTCACCCTAAAGTTGATGCTGAATGTTT
TGTTGCAGGTTGGGGAAGAATTCAGTTCGATCCAAAAAAATCACCAGAAA
AGCTTCAACAAGCAAAATTACCCATCATGCACCGTCCTGACCGCGAACAA
GTTATGGCTGGTTATGGCATCAGCTCCAAAGGAAAAGCCAATGCTTGCCA
AGGAGATTCTGGTGGTCCATTGATGTGTTTGAAATCTGATGGAAAATCAT
GGCAAGTTGAAGGTGCTGCAAGCTGGGTATACAGAGGATGTCATTCTGTT
AGTGCGTTTTCGCCACTCAATAAATATTTGAGCTGGGTCAAACAGTATGT
TAGTGATTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005904XLOC_005904Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010524-exon-sc0000107-1491911889:356897..357002TCONS_00010524-exon-sc0000107-1491911889:356897..357002Clytia hemisphaericaexon
TCONS_00010524-exon-sc0000107-1510915933:356897..357002TCONS_00010524-exon-sc0000107-1510915933:356897..357002Clytia hemisphaericaexon
TCONS_00010524-exon-sc0000107-1575043694:356897..357002TCONS_00010524-exon-sc0000107-1575043694:356897..357002Clytia hemisphaericaexon
TCONS_00010524-exon-sc0000107-1491911889:357128..357512TCONS_00010524-exon-sc0000107-1491911889:357128..357512Clytia hemisphaericaexon
TCONS_00010524-exon-sc0000107-1510915933:357128..357512TCONS_00010524-exon-sc0000107-1510915933:357128..357512Clytia hemisphaericaexon
TCONS_00010524-exon-sc0000107-1575043694:357128..357512TCONS_00010524-exon-sc0000107-1575043694:357128..357512Clytia hemisphaericaexon
TCONS_00010524-exon-sc0000107-1491911889:357999..358281TCONS_00010524-exon-sc0000107-1491911889:357999..358281Clytia hemisphaericaexon
TCONS_00010524-exon-sc0000107-1510915933:357999..358281TCONS_00010524-exon-sc0000107-1510915933:357999..358281Clytia hemisphaericaexon
TCONS_00010524-exon-sc0000107-1575043694:357999..358281TCONS_00010524-exon-sc0000107-1575043694:357999..358281Clytia hemisphaericaexon
TCONS_00010524-exon-sc0000107-1491911889:358732..359540TCONS_00010524-exon-sc0000107-1491911889:358732..359540Clytia hemisphaericaexon
TCONS_00010524-exon-sc0000107-1510915933:358732..359540TCONS_00010524-exon-sc0000107-1510915933:358732..359540Clytia hemisphaericaexon
TCONS_00010524-exon-sc0000107-1575043694:358732..359540TCONS_00010524-exon-sc0000107-1575043694:358732..359540Clytia hemisphaericaexon
TCONS_00010524-exon-sc0000107-1491911889:360188..360330TCONS_00010524-exon-sc0000107-1491911889:360188..360330Clytia hemisphaericaexon
TCONS_00010524-exon-sc0000107-1510915933:360188..360330TCONS_00010524-exon-sc0000107-1510915933:360188..360330Clytia hemisphaericaexon
TCONS_00010524-exon-sc0000107-1575043694:360188..360330TCONS_00010524-exon-sc0000107-1575043694:360188..360330Clytia hemisphaericaexon
TCONS_00010524-exon-sc0000107-1491911889:360576..360858TCONS_00010524-exon-sc0000107-1491911889:360576..360858Clytia hemisphaericaexon
TCONS_00010524-exon-sc0000107-1510915933:360576..360858TCONS_00010524-exon-sc0000107-1510915933:360576..360858Clytia hemisphaericaexon
TCONS_00010524-exon-sc0000107-1575043694:360576..360858TCONS_00010524-exon-sc0000107-1575043694:360576..360858Clytia hemisphaericaexon
TCONS_00010524-exon-sc0000107-1491911889:361943..362306TCONS_00010524-exon-sc0000107-1491911889:361943..362306Clytia hemisphaericaexon
TCONS_00010524-exon-sc0000107-1510915933:361943..362306TCONS_00010524-exon-sc0000107-1510915933:361943..362306Clytia hemisphaericaexon
TCONS_00010524-exon-sc0000107-1575043694:361943..362306TCONS_00010524-exon-sc0000107-1575043694:361943..362306Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010524-proteinTCONS_00010524-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000107supercontigsc0000107:356897..362306 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.431655	0	0	0	0.419298	0	0	0	0	0	0	18.1238	20.5974	48.3987	71.125	5.4038	6.72559	41.5396	45.756	56.6727	55.2859	17.6861	16.0793	6.6245	6.40489	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR033116TRYPSIN_SER
IPR018114TRYPSIN_HIS
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
[Close]
BLAST of TCONS_00010524 vs. Swiss-Prot (Human)
Match: CTRB2 (Chymotrypsinogen B2 OS=Homo sapiens GN=CTRB2 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 2.988e-41
Identity = 87/238 (36.55%), Postives = 133/238 (55.88%), Query Frame = 3 
Query:  378 SRIVNGDEAKEGAWPWIVSLQTSGGFHFCGGSILTPTWILTASHCVDSRKNSPTSMRVIAGAHNIKSREGTQQKMTPKRIIMHQSYGVGGFLNADIALIELSSPLRLNDRVVRACVPQQGVYPKVGTKCYIAGWGRISYNPRRSPEKLQQAKLPIMNN--------KGKEQVIAGHGVRGKANACQGDSGGPLMCLKSDGKSWQVEGAASYVYRGCYGIS--AYSPLNKYLSWVKRYV 1061
            SRIVNG++A  G+WPW VSLQ   GFHFCGGS+++  W++TA+HC        TS  V+AG  +  S E   Q +   ++  +  + +   +N DI L++L++P R +  V   C+P        GT C   GWG+  YN  ++P+KLQQA LP+++N        +    V+   G  G  ++C GDSGGPL+C K DG +W + G  S+  R C   +   Y+ + K + WV++ +
Sbjct:   32 SRIVNGEDAVPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHC-----GVRTSDVVVAGEFDQGSDEENIQVLKIAKVFKNPKFSILT-VNNDITLLKLATPARFSQTVSAVCLPSADDDFPAGTLCATTGWGKTKYNANKTPDKLQQAALPLLSNAECKKSWGRRITDVMICAGASG-VSSCMGDSGGPLVCQK-DG-AWTLVGIVSWGSRTCSTTTPAVYARVAKLIPWVQKIL 260

HSP 2 Score: 148.288 bits (373), Expect = 2.319e-39
Identity = 85/254 (33.46%), Postives = 139/254 (54.72%), Query Frame = 2 
Query: 1589 CGVSKV-----SQSRVVNGVDAKEGAWPWIVSLQTSSGFHFCGGSILTPNWILTASHCVASRKNTPRQLNVVAGAHNIKIKEASQQKIAAKRIIMHPHYDNDGHLHADIALIELSSPLRLNSRVVRACVPQQGIHPKVDAECFVAGWGRIQFDPKKSPEKLQQAKLPIMHRPDREQ--------VMAGYGISSKGKANACQGDSGGPLMCLKSDGKSWQVEGAASWVYRGCHSVS--AFSPLNKYLSWVKQYVS 2305
            CGV  +       SR+VNG DA  G+WPW VSLQ  +GFHFCGGS+++ +W++TA+HC     +      VVAG  +    E + Q +   ++  +P + +   ++ DI L++L++P R +  V   C+P           C   GWG+ +++  K+P+KLQQA LP++   + ++        VM   G S     ++C GDSGGPL+C K DG +W + G  SW  R C + +   ++ + K + WV++ ++
Sbjct:   19 CGVPAIHPVLSGLSRIVNGEDAVPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHCGVRTSDV-----VVAGEFDQGSDEENIQVLKIAKVFKNPKF-SILTVNNDITLLKLATPARFSQTVSAVCLPSADDDFPAGTLCATTGWGKTKYNANKTPDKLQQAALPLLSNAECKKSWGRRITDVMICAGASG---VSSCMGDSGGPLVCQK-DG-AWTLVGIVSWGSRTCSTTTPAVYARVAKLIPWVQKILA 261
The following BLAST results are available for this feature:
BLAST of TCONS_00010524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRB22.988e-4136.55Chymotrypsinogen B2 OS=Homo sapiens GN=CTRB2 PE=2 ... [more]
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