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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010557 ID=TCONS_00010557|Name=TCONS_00010557|organism=Clytia hemisphaerica|type=transcript|length=1116bp
ATATAATGGAGTGgtatttttggaactttttaaCTTAATGTCCCGTCAAA
TTGTTATAATTTGTATTAATCAAGCTGTCCAAACCTGGCAAAAGACTTCG
AGTATAAATTGCGTGCGAATCTTTCTGAAAATTTACAATCACTTTTGgat
tcattttttcattatgaTGTTGAAATTGGTTCTAGCAGTTCTTGTTGTAG
CACCTTATGTAGAAGGAAGAGGTGGTATCTCTAAAGTTCAAGAAAAACGA
ATCGTTAATGGAGTTGAAGTAAACCCAGAAGGTAAATGGCCGTGGATCGT
GTCAATATCGATACAAAATCAAGTTGCAAAAAGAAACTGTGGTGGTAGTA
TTTTGACAAGTACCTGGATTTTGACAGCCGCTCATTGCTTCGATGCTCGT
CCTCCAAATTTTCCTCATCCACCTGTAGCTACGGATATCACAGTAGTAGC
CGGTGCACATAATATTCAACGTCAAGAAAGATCACAACAAAGTAGAGGGG
CTACAAGATATATCCTGCACCCAAACTACAATCCTCATACTCTAACAGCT
GACATTGCTTTGATCCAGTTATCGAGTCCATTAATTTTCAATCAGCGAGT
TAAAAGAGCTCGTATTCAAGCCAAAGACGTCTATCCGAAAATGAATAAGA
ATTGTTATGCTGCTGGCTGGGGACTGACCAATGTGCATCCAAAGATCTCA
CCCGCAACATTGCAAGAGGCACGGCTCCCTATCATCCAGAAGAACGTCCA
TAATGAGCATATCTATGCAGGACATGAACAGCCGGCAAACACGTGGCCAA
GCACATGCATGGGCGATTCTGGTGGTCCATTGATGTGTGAGAGGTCTACT
GACAAGGCATGGGTAGTAAAAGGAGTATTATCTCATGGTGCAACAGATTG
TACCGTTTACAGTGCATTTACACCGGTAGCCACGTACTTGAACTGGATTA
AAACATTCAACGTTGGGGATATTAAAACTTAGAATTTCTTACAtatgttt
gatttgaaataaaatgagTCTACAGTAACAATGATAATTTtgttgtatta
aaaaaaaaactttactcCACGCCTTAttctatacacgttttttgtaagaa
caaactatataagaaa Run BLAST on NCBI transcript from alignment at sc0000107:335778..338379- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010557 ID=TCONS_00010557|Name=TCONS_00010557|organism=Clytia hemisphaerica|type=transcript|length=2602bp|location=Sequence derived from alignment at sc0000107:335778..338379- (Clytia hemisphaerica)
ATATAATGGAGTGGTATTTTTGGAACTTTTTAACTTAATGTCCCGTCAAA
TTGTTATAATTTGTATTAATCAAGCTGTCCAAACCTGGCAAAAGACTTCG
AGTATAAATTGCGTGCGAATCTTTCTGAAAATTTACAATCACTTTTGGAT
TCATTTTTTCATTATGATGTTGAAATTGGTTCTAGCAGTTCTTGTTGTAG
CACCTTGTAAGTATTTTGATACCTAGCTTCGAATTTCAAAATAACTACCT
TGGCTTTTTGCTTTTACTTTTTACCCTTTAACTGTCATGCGCTCGACCTA
TTTGCCAAATGTATATGCCGACATGAGCGAACACAAAGTTTACCATCACA
TTTACTCTTATTTTCTGAAAAATATCAGAAATATGAGTGATATGTGTTTG
CTTTGAGTTGAAAAAGATATAATGATTTTCAATTTTCATATATTATGAAA
AACATTTTTTAAATACAATTTAATTACTAAACTTTCTCAAAATCGAACTT
TTAATAAATTTCAAAAAAAAACACTACAAAGAATGGAAAGTGCTCATGTC
GGCAAATGCCGTCATCGGCAAAGAAATCAAAAGCGCCCTCCATGTCAACA
TTCTTTTCTTTTCTTTTCTTTTTTTTAAAAATGATATAATATTCACTAAA
ACAATGAGGTAGACTTTCATTTCTTATCGATGGTCTCAAATTATTTGAGA
CAGACAGAGCTCGAGTTTAACATAAGTTTTTCAAATGTTACACGCATTAT
ATTATTGACGGCATTAAATATCACACATATAGAATAAGCAATGATCCTTC
TTTACGCATACAGATACATACTATTGGACCTAATTTAGACGTTTTAATTT
TTAGATGTAGAAGGAAGAGGTGGTATCTCTAAAGTTCAAGAAAAACGAAT
CGTTAATGGAGTTGAAGTAAACCCAGAAGGTAAATGGCCGTGGATCGTGT
CAATATCGATACAAAATCAAGTTGCAAAAAGAAACTGTGGTGGTAGTATT
TTGACAAGTACCTGGGTACGTTTAGGAATAGTAATTCTGGGATTTAGCTC
AGTAACTTGATAATATAAAACCGATTTTTGAATAATACAACGTATGTTTT
CAATTGAAAAACATAAAACTAGCGAAAGGACTCAAATTCAAAAAAAACTT
ACTCGAGAATATTCAGGGTGGTGTAGCTTGGAAATGACTGGAAAAAAATT
ATTGCAAATTGACGAAAGTCAGGACCGTTAGCAATAGGTGGTCCACCTAA
ACATATTCTAAAATCTTGATGATCACGTGATCAACTTTCAACTGACCCAT
ATTAAAAATCCTTTTCATAGATTTTGACAGCCGCTCATTGCTTCGATGCT
CGTCCTCCAAATTTTCCTCATCCACCTGTAGCTACGGATATCACAGTAGT
AGCCGGTGCACATAATATTCAACGTCAAGAAAGATCACAACAAAGTAGAG
GGGCTACAAGATATATCCTGCACCCAAACTACAATCCTCATACTCTAACA
GCTGACATTGCTTTGATCCAGTTATCGAGTCCATTAATTTTCAATCAGCG
AGTTAAAAGAGCTCGTATTCAAGCCAAAGACGTCTATCCGAAAATGAATA
AGAATTGTTATGCTGCTGGTGAGTAAGACTTGTCTCCAAAGTTCAAATGA
AAACTGGAGAATAAATAAATATTTCACTATCGACCTCCCCCTGTAGGCCG
AGAAAAGTTTATTTTAACTTCCTAGAAAAAAGTCTTCTATGGTTACCTTT
AAAAAAATCAATTACTGTGCTTTTCACAGAATTTCATCGAGTGTAATCAA
TTGGAAGACCAGTGTGTGATTCAGGGAAGTGAATGTACCTTCGCCCGGGT
CAATCCATATCATGTGAGTGCAGTTGGGTACAACTACTCTCTGAAACAAG
GGTAGATAATCGTGCCACGACACTTGTCGCTATATGTTCGGTCACGCTAT
TAATACCTTTCTTACTATGGTATACGTCATGACAGAGCAATGATTCTGCA
GAGCAATGATTCTGCAGAGCAATGATTCTGCAGCGCAATGATTCTTATTC
TCGCGTGATTAAGACCCATTTCGAGATATCACGGGGCGTATAACCATCCA
TCTTTCGAATTAACCAGAAGTAAAAATAAGTTTGATCATATTTTGTGACA
GGCTGGGGACTGACCAATGTGCATCCAAAGATCTCACCCGCAACATTGCA
AGAGGCACGGCTCCCTATCATCCAGAAGAACGTCCATAATGAGCATATCT
ATGCAGGACATGAACAGCCGGCAAACACGTGGCCAAGCACATGCATGGGC
GATTCTGGTGGTCCATTGATGTGTGAGAGGTCTACTGACAAGGCATGGGT
AGTAAAAGGAGTATTATCTCATGGTGCAACAGATTGTACCGTTTACAGTG
CATTTACACCGGTAGCCACGTACTTGAACTGGATTAAAACATTCAACGTT
GGGGATATTAAAACTTAGAATTTCTTACATATGTTTGATTTGAAATAAAA
TGAGTCTACAGTAACAATGATAATTTTGTTGTATTAAAAAAAAAACTTTA
CTCCACGCCTTATTCTATACACGTTTTTTGTAAGAACAAACTATATAAGA
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010557-exon-sc0000107-1575043694:338174..338379 | TCONS_00010557-exon-sc0000107-1575043694:338174..338379 | Clytia hemisphaerica | exon |
| TCONS_00010557-exon-sc0000107-1575043694:337365..337525 | TCONS_00010557-exon-sc0000107-1575043694:337365..337525 | Clytia hemisphaerica | exon |
| TCONS_00010557-exon-sc0000107-1575043694:336762..337059 | TCONS_00010557-exon-sc0000107-1575043694:336762..337059 | Clytia hemisphaerica | exon |
| TCONS_00010557-exon-sc0000107-1575043694:335778..336228 | TCONS_00010557-exon-sc0000107-1575043694:335778..336228 | Clytia hemisphaerica | exon |
| TCONS_00010557-exon-sc0000107-1510915933:338174..338379 | TCONS_00010557-exon-sc0000107-1510915933:338174..338379 | Clytia hemisphaerica | exon |
| TCONS_00010557-exon-sc0000107-1510915933:337365..337525 | TCONS_00010557-exon-sc0000107-1510915933:337365..337525 | Clytia hemisphaerica | exon |
| TCONS_00010557-exon-sc0000107-1510915933:336762..337059 | TCONS_00010557-exon-sc0000107-1510915933:336762..337059 | Clytia hemisphaerica | exon |
| TCONS_00010557-exon-sc0000107-1510915933:335778..336228 | TCONS_00010557-exon-sc0000107-1510915933:335778..336228 | Clytia hemisphaerica | exon |
| TCONS_00010557-exon-sc0000107-1491911889:338174..338379 | TCONS_00010557-exon-sc0000107-1491911889:338174..338379 | Clytia hemisphaerica | exon |
| TCONS_00010557-exon-sc0000107-1491911889:337365..337525 | TCONS_00010557-exon-sc0000107-1491911889:337365..337525 | Clytia hemisphaerica | exon |
| TCONS_00010557-exon-sc0000107-1491911889:336762..337059 | TCONS_00010557-exon-sc0000107-1491911889:336762..337059 | Clytia hemisphaerica | exon |
| TCONS_00010557-exon-sc0000107-1491911889:335778..336228 | TCONS_00010557-exon-sc0000107-1491911889:335778..336228 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000107 | supercontig | sc0000107:335778..338379 - |
Blast
BLAST of TCONS_00010557 vs. Swiss-Prot (Human)
Match: CTRB2 (Chymotrypsinogen B2 OS=Homo sapiens GN=CTRB2 PE=2 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 2.916e-31 Identity = 77/246 (31.30%), Postives = 122/246 (49.59%), Query Frame = 2
Query: 248 RIVNGVEVNPEGKWPWIVSISIQNQVAKRNCGGSILTSTWILTAAHCFDARPPNFPHPPVATDITVVAGAHNIQRQERSQQSRGATRYILHPNYNPHTLTADIALIQLSSPLIFNQRVKRARIQAKDVYPKMNKNCYAAGWGLTNVHPKISPATLQEARLPIIQ---------KNVHNEHIYAGHEQPANTWPSTCMGDSGGPLMCERSTDKAWVVKGVLSHGATDC--TVYSAFTPVATYLNWIK 952
RIVNG + P G WPW +S+Q++ CGGS+++ W++TAAHC V T VVAG + E + Q + +P ++ T+ DI L++L++P F+Q V + + D C GWG T + +P LQ+A LP++ + + + I AG S+CMGDSGGPL+C++ D AW + G++S G+ C T + + VA + W++
Sbjct: 33 RIVNGEDAVP-GSWPW--QVSLQDKTGFHFCGGSLISEDWVVTAAHC-----------GVRTSDVVVAGEFDQGSDEENIQVLKIAKVFKNPKFSILTVNNDITLLKLATPARFSQTVSAVCLPSADDDFPAGTLCATTGWGKTKYNANKTPDKLQQAALPLLSNAECKKSWGRRITDVMICAGASG-----VSSCMGDSGGPLVCQK--DGAWTLVGIVSWGSRTCSTTTPAVYARVAKLIPWVQ 257
The following BLAST results are available for this feature:
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