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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010585 ID=TCONS_00010585|Name=TCONS_00010585|organism=Clytia hemisphaerica|type=transcript|length=3828bpRun BLAST on NCBI protein sequence of TCONS_00010585-protein >TCONS_00010585-protein ID=TCONS_00010585-protein|Name=TCONS_00010585-protein|organism=Clytia hemisphaerica|type=polypeptide|length=858bp LSLIKKCNNMEEEERENSQRVEDEKPSTNHKELVDKLNQNWTKIEEILSLRun BLAST on NCBI transcript from alignment at sc0000107:587283..597920- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010585 ID=TCONS_00010585|Name=TCONS_00010585|organism=Clytia hemisphaerica|type=transcript|length=10638bp|location=Sequence derived from alignment at sc0000107:587283..597920- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000107:587283..597920- >TCONS_00010585 ID=TCONS_00010585|Name=TCONS_00010585|organism=Clytia hemisphaerica|type=CDS|length=2577bp|location=Sequence derived from alignment at sc0000107:587283..597920- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00010585 vs. Swiss-Prot (Human)
Match: F16A1 (Protein FAM160A1 OS=Homo sapiens GN=FAM160A1 PE=2 SV=2) HSP 1 Score: 217.238 bits (552), Expect = 1.677e-57 Identity = 158/525 (30.10%), Postives = 258/525 (49.14%), Query Frame = 2
Query: 119 NWTKIEEILS----LK--EGDFKQIATDLSNIVHETVDILLEL---SNDKDYELVSC-EFCQRNHLFNKIYNWTGQHRECLRVMAKQQLGIYDKVIQKSSIALLSCKEVXXXXXXXXXXXKPTDKRKVPPDIEQLYVTILYHISQRIXXXXXXXXXXXXXXXXEGFKIPKFTFFELLTLYTHHGGENGNLARKAILDSIRTSASHELFQKYITGESAVSVIIAGGLSARYSSLPTTLDIHTEEWHYITEEDLVEMKEVQSFLQALDFCCQVTEASNPQVRSHLGKLIYDGFLMSVLAPALNQSQYDSQIAVMAYLDLFLRCISSPKVMEVFLKVLMTDAYDNKALITLLIYHINSESVQLSMVAIHLFKTLLELNCEDIIFHLVFRYLLPCDHILPNQKRTIKSVDYYCKSATMFLYLTPSCCIETNKSNRNNEKDESLDQLPDSHANTASTNASPRSIRSIGESPRVARKASVNSITSRVSNLSIVPDLRPQETVDFLEYLAEARSAITYCKRSCVCWSAVYDG 1663
+W ++ +IL LK + + I D ++ V V+ +L L KD + EF ++ K++ W+ + RE +QL +Y+ ++ +S LL K +L PL++LL S T P +E+ V +L + + + L +G F F LL + H G G AR A+L + SA + + +I + ++A GLS YSSLPT L+ EEWH + ++D + + + F+ +L+FC V + ++P +R+ L IY+GFL+ VLAPAL++ + + AYLDLFLR IS P ++E+FL+ ++ ++N ++ L IN+ +L +V++ LF+TL+ L+CED++ LV RYL+PC+H++ +Q+ +K D Y SA L LTP CC N++ + + H + E P + I L I +L+YL EA + I C R C WSA+YDG
Sbjct: 32 HWAQVVKILEKHDPLKNTQAKYGSIPPDEASAVQNYVEHMLFLLIEEQAKDAAMGPILEFVVSENIMEKLFLWSLR-REFTDETKIEQLKMYEMLVTQSHQPLLHHKPILKPLMMLLSSCSGTTT----PTVEEKLVVLLNQLCSILAKDPSILELFFHTSEDQGAA--NFLIFSLLIPFIHREGSVGQQARDALLFIMSLSAENTMVAHHIVENTYFCPVLATGLSGLYSSLPTKLEEKGEEWHCLLKDDWLLLPSLVQFMNSLEFCNAVIQVAHPLIRNQLVNYIYNGFLVPVLAPALHKVTVEEVMTTTAYLDLFLRSISEPALLEIFLRFILLHQHENVHILDTLTSRINT-PFRLCVVSLALFRTLIGLHCEDVMLQLVLRYLIPCNHMMLSQRWAVKERDCYSVSAAKLLALTPVCCSSGITLTLGNQERDYILWSKCMHDTSGPV-----------ERPFPEAFSESACIVEYGKALDI----------SYLQYLWEAHTNILRCMRDCRVWSALYDG 527 HSP 2 Score: 98.2117 bits (243), Expect = 1.908e-20 Identity = 55/143 (38.46%), Postives = 85/143 (59.44%), Query Frame = 2
Query: 1790 DDSSKSKVDPIYT--TEILGPFLNAIFDKLEVMFESNIYVNLLLTSLVSRLACYPQPLLRSFLLNANLVIRPGVRSLAQVLKRVSDGADLFVGRMDDYQVLITKARENLLNRKEKDHTTGGKIKEENETQLIISLDTTTGSTK 2212
D+++ + P+ T T GPF++ + KLE M E++++VNLLL ++++LA YPQPLLRSFLLN N+V +P VRSL QVL V + + F D+ L+ +A++ LL R + T + ++ I + TGS K
Sbjct: 832 DEAAFASRHPVRTQSTPFTGPFISVVLSKLENMLENSLHVNLLLIGIITQLASYPQPLLRSFLLNTNMVFQPSVRSLYQVLASVKNKIEQFASVERDFPGLLIQAQQYLLFRVDMSDMTPAALTKDP-----IQEASRTGSGK 969 The following BLAST results are available for this feature:
BLAST of TCONS_00010585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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